© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|8244 |
| Gene name | |
| Location | scaffold_897:808..2984 |
| Strand | - |
| Gene length (bp) | 2176 |
| Transcript length (bp) | 1899 |
| Coding sequence length (bp) | 1896 |
| Protein length (aa) | 632 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00172 | Zn_clus | Fungal Zn(2)-Cys(6) binuclear cluster domain | 1.6E-09 | 65 | 98 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Yes |
| GO:0008150 | biological_process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0046872 | metal ion binding | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0005488 | binding | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0003700 | DNA-binding transcription factor activity | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 52 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Fungal Specific TF |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 14.53 | 6.62 | 22.44 |
| CcL | In ants, during behavior modification | 15.31 | 6.90 | 23.72 |
| CcD | In ants, recently dead | 17.28 | 8.19 | 26.38 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.880154 | no |
| SC16a | CcD | 0.559508 | no |
| CcL | CcD | 0.691648 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|8244 MKSPLNARVKRDGSSAKGTTTLLCQSPPDDGSSSGPSQASADVNPLKRRMLDAGVDYPRRRATIACEVCRSRKSR CDGTKPKCKLCAELGADCVYREPGVKLDAGDKLILEQLARIESLITINMPLPAPNGNGHHQAAAAAAAAAAAASS AALVSVPSGPFASWSGTCPAPTNISVMPKSHTNATMHLLRWPRIRQLVSRPYDPQLLLQLEMAREPLHSLTKTPC VDLSNTQAYIEAYFARVNVWYACVNPYTWRSQYRTALSNGFREGPESCIVLLVLALGEASLRGSISRIVPHDDPP GLQYFTAAWSLLPAMMTANNVLAAQCHLLAAAYLFYLVRPLEAWNLLCTTSTKLQLLLMAPSRIPPQLRELVERI YWNALLFESDLLAELDLPHSGVVQLEEHVSLPGGFEGDDQEQVARDELWYFLAEIALRRLLNRVSQLIYAKDSIL NMSSLEPVVAELDYQLAQWYESLPMPLQFPFTRTALRDPVQAVLRLRFYACRTIIYRPYILAVLENEQAVLDPSV REACQKCLEACVRQMEHVAEHQAGHMPYMWQGVLSMLSQSLLVMGASMSPSLLGILLTLVPHREALERIIGEVVV EIERCAPLAPSLGLAAEIVKGAEARRRTMLNG |
| Coding | >Ophio5|8244 ATGAAGTCACCGCTCAACGCCAGAGTCAAGCGAGATGGCAGCAGCGCCAAGGGGACGACGACGCTGCTGTGCCAG TCGCCTCCGGATGATGGATCGTCGAGCGGTCCTTCGCAGGCGTCGGCTGACGTCAACCCGCTGAAGAGGCGGATG CTGGACGCTGGCGTCGATTATCCGCGACGACGGGCGACGATAGCGTGCGAAGTCTGCCGCTCCAGAAAGTCACGC TGCGACGGCACCAAGCCAAAATGCAAGCTCTGCGCGGAGCTCGGCGCCGATTGCGTCTATCGAGAACCAGGCGTC AAGCTCGATGCTGGCGATAAGCTCATCCTCGAACAACTCGCTCGCATCGAGAGCCTCATCACCATCAACATGCCT CTTCCTGCCCCCAATGGCAACGGTCATCACCAAGCAGCGGCGGCGGCAGCAGCGGCGGCAGCAGCAGCATCGTCA GCTGCACTCGTCTCCGTCCCCAGCGGTCCTTTTGCTTCCTGGTCCGGCACTTGTCCCGCGCCGACAAACATCTCC GTCATGCCCAAGAGCCATACAAACGCTACCATGCATCTTCTTCGCTGGCCCAGGATCCGCCAGCTCGTCTCCCGT CCTTACGATCCTCAACTGCTGCTTCAGCTAGAGATGGCTCGCGAGCCGCTTCATTCGCTCACCAAGACGCCCTGT GTCGACCTCTCGAATACGCAGGCCTACATCGAGGCCTACTTCGCCCGTGTCAACGTCTGGTACGCCTGCGTCAAC CCTTACACCTGGCGCAGTCAGTATCGAACCGCCCTCTCCAACGGCTTCCGCGAGGGTCCGGAGAGCTGCATCGTC CTGCTCGTCTTGGCCCTGGGAGAGGCCAGTCTGCGGGGCAGCATCTCACGCATCGTCCCTCACGATGATCCCCCC GGTCTGCAGTACTTTACCGCCGCCTGGTCCCTGCTCCCGGCCATGATGACGGCCAACAACGTGCTGGCCGCCCAG TGCCACCTCCTGGCCGCCGCCTATCTCTTCTATCTCGTCCGCCCGCTCGAGGCTTGGAACTTGCTCTGCACCACC AGCACCAAGCTGCAGCTTCTGCTCATGGCCCCGAGCCGGATCCCCCCGCAGCTTCGTGAGCTCGTCGAGCGCATT TACTGGAACGCGCTGCTGTTTGAGAGCGACCTCCTCGCCGAGCTCGACCTCCCCCACTCGGGCGTCGTCCAGCTC GAGGAACACGTCAGTCTCCCCGGAGGCTTCGAGGGCGACGACCAGGAGCAGGTGGCCCGAGACGAGCTGTGGTAT TTCCTAGCCGAGATTGCCCTCCGTCGGCTGCTCAACCGCGTCAGCCAGCTCATCTACGCAAAGGATTCCATCCTC AACATGAGCAGCCTCGAGCCCGTCGTCGCAGAGCTCGACTACCAGCTCGCCCAGTGGTACGAGAGCCTGCCTATG CCCCTGCAGTTCCCCTTTACCCGCACCGCCCTGCGTGACCCCGTCCAGGCCGTCCTACGCCTGCGCTTCTACGCC TGCCGCACCATCATCTATCGCCCCTACATTCTGGCCGTCTTGGAGAACGAACAGGCCGTCCTGGACCCTTCGGTC CGCGAGGCGTGCCAGAAGTGCCTCGAGGCATGCGTACGCCAGATGGAGCACGTGGCTGAGCACCAAGCCGGCCAC ATGCCCTACATGTGGCAGGGCGTCCTGTCGATGCTCTCGCAGTCGCTTCTCGTCATGGGCGCCTCCATGTCGCCC TCGCTGCTGGGCATCCTGCTCACCCTGGTGCCCCACCGCGAAGCCCTGGAGCGCATCATCGGCGAGGTCGTCGTC GAGATTGAGCGCTGCGCACCCTTGGCTCCGAGCCTCGGCCTCGCCGCCGAGATTGTCAAGGGCGCCGAGGCGAGG AGACGGACCATGCTGAACGGA |
| Transcript | >Ophio5|8244 ATGAAGTCACCGCTCAACGCCAGAGTCAAGCGAGATGGCAGCAGCGCCAAGGGGACGACGACGCTGCTGTGCCAG TCGCCTCCGGATGATGGATCGTCGAGCGGTCCTTCGCAGGCGTCGGCTGACGTCAACCCGCTGAAGAGGCGGATG CTGGACGCTGGCGTCGATTATCCGCGACGACGGGCGACGATAGCGTGCGAAGTCTGCCGCTCCAGAAAGTCACGC TGCGACGGCACCAAGCCAAAATGCAAGCTCTGCGCGGAGCTCGGCGCCGATTGCGTCTATCGAGAACCAGGCGTC AAGCTCGATGCTGGCGATAAGCTCATCCTCGAACAACTCGCTCGCATCGAGAGCCTCATCACCATCAACATGCCT CTTCCTGCCCCCAATGGCAACGGTCATCACCAAGCAGCGGCGGCGGCAGCAGCGGCGGCAGCAGCAGCATCGTCA GCTGCACTCGTCTCCGTCCCCAGCGGTCCTTTTGCTTCCTGGTCCGGCACTTGTCCCGCGCCGACAAACATCTCC GTCATGCCCAAGAGCCATACAAACGCTACCATGCATCTTCTTCGCTGGCCCAGGATCCGCCAGCTCGTCTCCCGT CCTTACGATCCTCAACTGCTGCTTCAGCTAGAGATGGCTCGCGAGCCGCTTCATTCGCTCACCAAGACGCCCTGT GTCGACCTCTCGAATACGCAGGCCTACATCGAGGCCTACTTCGCCCGTGTCAACGTCTGGTACGCCTGCGTCAAC CCTTACACCTGGCGCAGTCAGTATCGAACCGCCCTCTCCAACGGCTTCCGCGAGGGTCCGGAGAGCTGCATCGTC CTGCTCGTCTTGGCCCTGGGAGAGGCCAGTCTGCGGGGCAGCATCTCACGCATCGTCCCTCACGATGATCCCCCC GGTCTGCAGTACTTTACCGCCGCCTGGTCCCTGCTCCCGGCCATGATGACGGCCAACAACGTGCTGGCCGCCCAG TGCCACCTCCTGGCCGCCGCCTATCTCTTCTATCTCGTCCGCCCGCTCGAGGCTTGGAACTTGCTCTGCACCACC AGCACCAAGCTGCAGCTTCTGCTCATGGCCCCGAGCCGGATCCCCCCGCAGCTTCGTGAGCTCGTCGAGCGCATT TACTGGAACGCGCTGCTGTTTGAGAGCGACCTCCTCGCCGAGCTCGACCTCCCCCACTCGGGCGTCGTCCAGCTC GAGGAACACGTCAGTCTCCCCGGAGGCTTCGAGGGCGACGACCAGGAGCAGGTGGCCCGAGACGAGCTGTGGTAT TTCCTAGCCGAGATTGCCCTCCGTCGGCTGCTCAACCGCGTCAGCCAGCTCATCTACGCAAAGGATTCCATCCTC AACATGAGCAGCCTCGAGCCCGTCGTCGCAGAGCTCGACTACCAGCTCGCCCAGTGGTACGAGAGCCTGCCTATG CCCCTGCAGTTCCCCTTTACCCGCACCGCCCTGCGTGACCCCGTCCAGGCCGTCCTACGCCTGCGCTTCTACGCC TGCCGCACCATCATCTATCGCCCCTACATTCTGGCCGTCTTGGAGAACGAACAGGCCGTCCTGGACCCTTCGGTC CGCGAGGCGTGCCAGAAGTGCCTCGAGGCATGCGTACGCCAGATGGAGCACGTGGCTGAGCACCAAGCCGGCCAC ATGCCCTACATGTGGCAGGGCGTCCTGTCGATGCTCTCGCAGTCGCTTCTCGTCATGGGCGCCTCCATGTCGCCC TCGCTGCTGGGCATCCTGCTCACCCTGGTGCCCCACCGCGAAGCCCTGGAGCGCATCATCGGCGAGGTCGTCGTC GAGATTGAGCGCTGCGCACCCTTGGCTCCGAGCCTCGGCCTCGCCGCCGAGATTGTCAAGGGCGCCGAGGCGAGG AGACGGACCATGCTGAACGGATGA |
| Gene | >Ophio5|8244 ATGAAGTCACCGCTCAACGCCAGAGTCAAGCGAGATGGCAGCAGCGCCAAGGGGACGACGACGCTGCTGTGCCAG TCGCCTCCGGATGATGGATCGTCGAGCGGTCCTTCGCAGGCGTCGGCTGACGTCAACCCGCTGAAGAGGCGGATG CTGGACGCTGGCGTCGATTATCCGCGACGACGGGCGACGATAGCGGTTGGGAAGCCCCCTTCCTCTTTCTCTCTC TGTTTCTGTTTCTCTCTGTCTCTCTCTGTCTCTCTCTGCCTCGCTGTCCCTCCCTTCTCTCCTCTGTGATGATGA TGATGATGATGATGCTGCTGATGCTGATGCTGATAATCCTCCTGCTAACTAAAACCCCCCTTCCGCATATCATCT TCATATGTGGGAACATTTAGTGCGAAGTCTGCCGCTCCAGAAAGTCACGCTGCGACGGCACCAAGCCAAAATGCA AGCTCTGCGCGGAGCTCGGCGCCGATTGCGTCTATCGAGAACCAGGCGTCAAGCTCGATGCTGGCGATAAGCTCA TCCTCGAACAACTCGCTCGCATCGAGAGCCTCATCACCATCAACATGCCTCTTCCTGCCCCCAATGGCAACGGTC ATCACCAAGCAGCGGCGGCGGCAGCAGCGGCGGCAGCAGCAGCATCGTCAGCTGCACTCGTCTCCGTCCCCAGCG GTCCTTTTGCTTCCTGGTCCGGCACTTGTCCCGCGCCGACAAACATCTCCGTCATGCCCAAGAGCCATACAAACG CTACCATGCATCTTCTTCGCTGGCCCAGGATCCGCCAGCTCGTCTCCCGTCCTTACGATCCTCAACTGCTGCTTC AGCTAGAGATGGCTCGCGAGCCGCTTCATTCGCTCACCAAGACGCCCTGTGTCGACCTCTCGAATACGCAGGCCT ACATCGAGGCCTACTTCGCCCGTGTCAACGTCTGGTACGCCTGCGTCAACCCTTACACCTGGCGCAGTCAGTATC GAACCGCCCTCTCCAACGGCTTCCGCGAGGGTCCGGAGAGCTGCATCGTCCTGCTCGTCTTGGCCCTGGGAGAGG CCAGTCTGCGGGGCAGCATCTCACGCATCGTCCCTCACGATGATCCCCCCGGTCTGCAGTACTTTACCGCCGCCT GGTCCCTGCTCCCGGCCATGATGACGGCCAACAACGTGCTGGCCGCCCAGTGCCACCTCCTGGCCGCCGCCTATC TCTTCTATCTCGTCCGCCCGCTCGAGGCTTGGAACTTGCTCTGCACCACCAGCACCAAGCTGCAGCTTCTGCTCA TGGCCCCGAGCCGGATCCCCCCGCAGCTTCGTGAGCTCGTCGAGCGCATTTACTGGAACGCGCTGCTGTTTGAGA GCGACCTCCTCGCCGAGCTCGACCTCCCCCACTCGGGCGTCGTCCAGCTCGAGGAACACGTCAGTCTCCCCGGAG GCTTCGAGGGCGACGACCAGGAGCAGGTGGCCCGAGACGAGCTGTGGTATTTCCTAGCCGAGATTGCCCTCCGTC GGCTGCTCAACCGCGTCAGCCAGCTCATCTACGCAAAGGATTCCATCCTCAACATGAGCAGCCTCGAGCCCGTCG TCGCAGAGCTCGACTACCAGCTCGCCCAGTGGTACGAGAGCCTGCCTATGCCCCTGCAGTTCCCCTTTACCCGCA CCGCCCTGCGTGACCCCGTCCAGGCCGTCCTACGCCTGCGCTTCTACGCCTGCCGCACCATCATCTATCGCCCCT ACATTCTGGCCGTCTTGGAGAACGAACAGGCCGTCCTGGACCCTTCGGTCCGCGAGGCGTGCCAGAAGTGCCTCG AGGCATGCGTACGCCAGATGGAGCACGTGGCTGAGCAGTAATCTACCCACCCCCCCCCCCCCTCTCCTACTGGAC CCCCTCCCTTACTGACCTTACTCGGTGCCTCCTCTGCAGCCAAGCCGGCCACATGCCCTACATGTGGCAGGGCGT CCTGTCGATGCTCTCGCAGTCGCTTCTCGTCATGGGCGCCTCCATGTCGCCCTCGCTGCTGGGCATCCTGCTCAC CCTGGTGCCCCACCGCGAAGCCCTGGAGCGCATCATCGGCGAGGTCGTCGTCGAGATTGAGCGCTGCGCACCCTT GGCTCCGAGCCTCGGCCTCGCCGCCGAGATTGTCAAGGGCGCCGAGGCGAGGAGACGGACCATGCTGAACGGATG A |