Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8232
Gene name
Locationscaffold_89:39160..39664
Strand-
Gene length (bp)504
Transcript length (bp)216
Coding sequence length (bp)213
Protein length (aa) 71

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.52 0.4497 0.2572 0.0768 0.2405 0.2533 0.3193 0.3069 0.2187 0.0548

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup16413
Change Orthofinder run
Species Protein ID
Ophiocordyceps kimflemingae Ophio5|8232 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8232
MLYFSLPLALRSFFLALSLSLSFSLSPSPSLPDSNKHRSVYGLTRSSTPLLPPHPLLPQPQPRSPDISSDG
Coding >Ophio5|8232
ATGTTATATTTCTCTCTCCCCTTGGCCCTCCGAAGTTTTTTCCTCGCTCTCTCTCTTTCTCTCTCTTTCTCTCTC
TCCCCCTCTCCTTCACTGCCAGACTCCAACAAGCACCGCTCTGTCTACGGACTCACCCGCTCTTCTACGCCTCTT
CTTCCACCTCATCCGTTACTGCCGCAGCCGCAGCCGCGCTCCCCCGACATCAGTTCCGACGGC
Transcript >Ophio5|8232
ATGTTATATTTCTCTCTCCCCTTGGCCCTCCGAAGTTTTTTCCTCGCTCTCTCTCTTTCTCTCTCTTTCTCTCTC
TCCCCCTCTCCTTCACTGCCAGACTCCAACAAGCACCGCTCTGTCTACGGACTCACCCGCTCTTCTACGCCTCTT
CTTCCACCTCATCCGTTACTGCCGCAGCCGCAGCCGCGCTCCCCCGACATCAGTTCCGACGGCTGA
Gene >Ophio5|8232
ATGTTATATTTCTCTCTCCCCTTGGCCCTCCGAAGTTTTTTCCTCGCTCTCTCTCTTTCTCTCTCTTTCTCTCTC
TCCCCCTCTCCTTCACTGCCAGACTCCAACAAGCACCGCTCTGTCTACGGACTCACCCGCTCTTCTGTTTGTGCT
CTGTACTCACCTGCTCCGTCTCTTCCTTGCTGACGACGGTCGCGTGAATCGCAGACGCCTCTTCTTCCACCTCAT
CCGTTACTGCCGCAGCCGCAGCCGCGCTCGTGTTTCCGCCCCTTCTGTCGACTCGAAGCCTCTTCCCTTCATCGG
CACTCAGGCCACCGTCCGCTTCGTCTACCTCGACTGTTTTTCCTCGGGAGGGAAAGAAAAACGTCTGCACTTAGG
GTCTCTTGGCGCACATTTCTGTTTATGTATCAGCACGATCAGCTCACCGTGTGCACACACTTCTTCAACCTGCAT
TTCTTTCGCATATCGCGAAGGCCGTGTAGCCCCGACATCAGTTCCGACGGCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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