Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|8165
Gene name
Location	scaffold_875:164..2701
Strand	-
Gene length (bp)	2537
Transcript length (bp)	2463
Coding sequence length (bp)	2460
Protein length (aa)	820

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03215	Rad17	Rad17 P-loop domain	1.2E-22	184	343

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5R652\|RAD17_PONAB	Cell cycle checkpoint protein RAD17 OS=Pongo abelii GN=RAD17 PE=2 SV=1	190	602	5.0E-37
sp\|P50531\|RAD17_SCHPO	Checkpoint protein rad17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad17 PE=1 SV=1	183	652	7.0E-37
sp\|O75943\|RAD17_HUMAN	Cell cycle checkpoint protein RAD17 OS=Homo sapiens GN=RAD17 PE=1 SV=2	190	602	8.0E-37
sp\|Q6NXW6\|RAD17_MOUSE	Cell cycle checkpoint protein RAD17 OS=Mus musculus GN=Rad17 PE=1 SV=2	187	602	3.0E-36
sp\|Q9XT62\|RAD17_CHLAE	Cell cycle checkpoint protein RAD17 OS=Chlorocebus aethiops GN=RAD17 PE=1 SV=1	190	602	3.0E-36

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5R652\|RAD17_PONAB	Cell cycle checkpoint protein RAD17 OS=Pongo abelii GN=RAD17 PE=2 SV=1	190	602	5.0E-37
sp\|P50531\|RAD17_SCHPO	Checkpoint protein rad17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad17 PE=1 SV=1	183	652	7.0E-37
sp\|O75943\|RAD17_HUMAN	Cell cycle checkpoint protein RAD17 OS=Homo sapiens GN=RAD17 PE=1 SV=2	190	602	8.0E-37
sp\|Q6NXW6\|RAD17_MOUSE	Cell cycle checkpoint protein RAD17 OS=Mus musculus GN=Rad17 PE=1 SV=2	187	602	3.0E-36
sp\|Q9XT62\|RAD17_CHLAE	Cell cycle checkpoint protein RAD17 OS=Chlorocebus aethiops GN=RAD17 PE=1 SV=1	190	602	3.0E-36
sp\|P32641\|RAD24_YEAST	Checkpoint protein RAD24 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD24 PE=1 SV=1	163	515	3.0E-20
sp\|Q9MBA3\|RAD17_ARATH	Cell cycle checkpoint protein RAD17 OS=Arabidopsis thaliana GN=RAD17 PE=2 SV=1	191	519	3.0E-17
sp\|Q8Q084\|RFCL_METMA	Replication factor C large subunit OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rfcL PE=3 SV=1	191	307	2.0E-08
sp\|Q46AT6\|RFCL_METBF	Replication factor C large subunit OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rfcL PE=3 SV=1	191	307	1.0E-07
sp\|Q5JHP1\|RFCL_THEKO	Replication factor C large subunit OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rfcL PE=1 SV=1	190	257	3.0E-07
sp\|Q9V2G3\|RFCL_PYRAB	Replication factor C large subunit OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rfcL PE=1 SV=3	190	257	1.0E-06
sp\|O57853\|RFCL_PYRHO	Replication factor C large subunit OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rfcL PE=3 SV=1	190	257	2.0E-06
sp\|Q12TX1\|RFCL_METBU	Replication factor C large subunit OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=rfcL PE=3 SV=1	191	257	2.0E-06
sp\|Q9UWR2\|RFCL_PYRFU	Replication factor C large subunit OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rfcL PE=1 SV=1	190	257	4.0E-06
sp\|Q8TPU4\|RFCL_METAC	Replication factor C large subunit OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcL PE=3 SV=1	191	257	6.0E-06

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 44	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|8165 MAPPAKRRRRNPVEDSDDEAEQPRANNTLANYLVSSLSSPTRQEPPSPVKNSVTASTAQRRPRGAAPQTNGVGLS PKRVRGGGRFNEKPKTADLKTLFSKQAQRTTRSSTTNPKTSTPIDDIISDPISEDDEISELKASSSSLVGQHARK RLKNGSDAGPVDAPSASRKFLKPAKPPIVAAALDDDDLRPWSERFGPRNLDELAVHKKKVTDVRKWLEAVTTGRI RQRLLVLKGAAGSGKTTTVRLLAQDMGLELLEWKNPAGSHGMLSPSASVQFDEFLGRGGKFGMLDVEAPQASGTP TSSGVAAQDRARRIMLVEEFPNTFSRSSSTLASFRRSILQYLAAPALARSKLNGRPQQEPVNPMVVIISETLLTT TSATADSLTAHRLLGPEILRHPGVTVMDFNAIAPTFLAKAMELIVQKEARKSGRRKTPGPLVLNRLGEIGDIRSA ISSLEFLCLKGDQEADWGAKVAFTKQKRGVRDAIGLTQGETETLEAITQREASLGIFHAVGKVVYNKRDEAPPPD DTVERLPTFLAEFARPNRSQVPIDSLIDEIGTDTQTFISALHENYVLSCESTEPMDSSTSMDYVNECIEYLSLSD LLCPSRDVFFGGNGFGLSGRDGSGYHLRQDEMTFQLAVRGMLFSLPHPVKRKPTGVLKGSEAFKMFYPTSIKLWK AKEEIGGLPATTTPWTERARRQATAASSESSKAEARPPMWLGSTARREMLLDRLPYMAHMARGRRSGIHVGDLEK VVSMQGTTVATDDDDAVGGDGDGPVGEAWATDRPSEEASPRRRHAGVRAGEMSGLVAQKLVLSDDDIEDD
Coding	>Ophio5\|8165 ATGGCTCCGCCCGCGAAGCGCCGAAGACGTAACCCGGTCGAAGATTCCGACGACGAGGCCGAACAGCCACGGGCC AACAACACCCTGGCCAACTACCTGGTGTCGTCTCTGAGCTCTCCCACCAGACAAGAGCCGCCGAGCCCCGTAAAG AACAGCGTTACCGCGTCCACGGCGCAGAGAAGGCCCCGCGGAGCCGCGCCGCAAACAAACGGTGTCGGACTGAGC CCCAAAAGGGTCAGGGGTGGCGGCAGGTTCAACGAGAAGCCTAAGACGGCGGACCTCAAGACGCTCTTCTCAAAG CAGGCCCAGAGGACAACGAGGTCGTCCACTACCAACCCGAAGACGAGCACACCCATCGACGACATAATCAGTGAC CCCATCTCCGAGGATGACGAGATTTCGGAGCTCAAGGCCAGCTCCTCCAGCCTGGTCGGTCAGCATGCGAGGAAG CGCTTGAAGAATGGCTCTGACGCCGGCCCGGTCGATGCGCCGAGCGCGAGCCGGAAATTCCTGAAGCCGGCAAAA CCACCTATCGTCGCAGCAGCCCTCGACGACGACGACCTGCGGCCTTGGTCGGAACGGTTCGGCCCCAGAAACCTG GATGAGCTGGCGGTACACAAGAAGAAGGTTACCGACGTCCGCAAGTGGCTGGAAGCCGTCACTACTGGCCGAATA AGGCAGCGGTTACTCGTGCTCAAAGGCGCCGCGGGCTCCGGCAAAACGACGACGGTGCGGCTGCTCGCCCAAGAC ATGGGCTTGGAGCTCTTGGAATGGAAGAACCCTGCGGGGTCCCACGGCATGCTTTCGCCGTCGGCCTCGGTGCAA TTTGACGAGTTTCTGGGTCGAGGCGGCAAATTTGGGATGCTCGACGTCGAGGCTCCTCAGGCTTCCGGCACGCCG ACCAGTTCCGGAGTCGCGGCTCAAGATCGGGCCAGGAGGATCATGCTCGTCGAAGAATTCCCAAACACCTTCTCC CGATCATCTTCCACTTTGGCCTCGTTTCGGAGGTCCATTCTTCAGTATCTCGCCGCGCCTGCACTCGCTCGATCC AAGTTGAACGGGAGACCGCAGCAGGAACCGGTCAACCCCATGGTGGTGATCATATCAGAGACTCTGTTGACTACG ACGTCAGCCACGGCAGACAGTCTGACTGCTCACCGGCTTCTCGGCCCCGAGATCCTGCGCCACCCGGGCGTCACG GTAATGGACTTCAACGCCATCGCCCCGACATTCCTGGCCAAGGCTATGGAGCTCATCGTGCAGAAAGAGGCTCGC AAGTCGGGACGCAGGAAGACGCCGGGGCCCTTGGTGCTGAATCGACTAGGCGAGATCGGAGACATCCGCAGCGCC ATATCGTCGCTAGAGTTTTTGTGTCTCAAAGGCGACCAGGAGGCAGACTGGGGGGCCAAGGTGGCGTTTACGAAG CAGAAGCGTGGCGTCCGAGATGCCATCGGCCTCACGCAGGGAGAAACGGAGACTCTCGAGGCGATAACGCAGCGC GAGGCCAGCCTCGGCATCTTCCACGCCGTCGGCAAAGTGGTGTACAATAAGCGAGACGAGGCACCGCCGCCCGAT GACACGGTCGAGAGGCTGCCGACGTTTCTGGCGGAGTTTGCGCGGCCCAACAGGTCCCAGGTGCCCATCGACAGC CTCATCGATGAGATTGGGACGGACACGCAAACGTTCATCTCTGCCCTGCACGAGAATTATGTACTGTCGTGCGAA AGCACTGAGCCGATGGACTCGTCGACATCGATGGACTACGTCAATGAGTGCATCGAGTATCTCTCCCTCAGCGAC CTGCTGTGCCCGTCCCGAGACGTCTTCTTTGGTGGCAACGGGTTTGGCCTTTCCGGGAGGGACGGTAGCGGTTAC CATCTACGGCAAGACGAGATGACGTTCCAGTTGGCGGTGCGCGGCATGCTGTTCTCGTTGCCGCACCCGGTCAAG CGGAAACCGACGGGCGTTCTCAAGGGCAGCGAGGCCTTCAAGATGTTCTACCCGACGAGCATCAAGCTATGGAAG GCAAAGGAGGAGATAGGGGGACTCCCGGCGACGACGACACCATGGACGGAGCGGGCGCGACGGCAGGCGACGGCA GCAAGCAGCGAGTCATCAAAGGCCGAGGCACGACCGCCCATGTGGCTCGGTAGCACGGCGCGGCGGGAGATGCTC CTCGATCGGCTTCCTTACATGGCGCACATGGCGCGCGGGCGCAGAAGCGGCATCCACGTGGGCGACCTGGAAAAG GTAGTGTCGATGCAGGGGACGACGGTGGCGACGGACGACGACGATGCGGTCGGCGGCGACGGAGACGGGCCCGTG GGCGAGGCGTGGGCAACGGATAGGCCGTCGGAGGAGGCCAGTCCGCGGAGGCGGCACGCTGGCGTCCGGGCTGGA GAGATGTCGGGCTTGGTGGCGCAGAAGCTGGTGCTGAGCGACGATGACATTGAGGACGAT
Transcript	>Ophio5\|8165 ATGGCTCCGCCCGCGAAGCGCCGAAGACGTAACCCGGTCGAAGATTCCGACGACGAGGCCGAACAGCCACGGGCC AACAACACCCTGGCCAACTACCTGGTGTCGTCTCTGAGCTCTCCCACCAGACAAGAGCCGCCGAGCCCCGTAAAG AACAGCGTTACCGCGTCCACGGCGCAGAGAAGGCCCCGCGGAGCCGCGCCGCAAACAAACGGTGTCGGACTGAGC CCCAAAAGGGTCAGGGGTGGCGGCAGGTTCAACGAGAAGCCTAAGACGGCGGACCTCAAGACGCTCTTCTCAAAG CAGGCCCAGAGGACAACGAGGTCGTCCACTACCAACCCGAAGACGAGCACACCCATCGACGACATAATCAGTGAC CCCATCTCCGAGGATGACGAGATTTCGGAGCTCAAGGCCAGCTCCTCCAGCCTGGTCGGTCAGCATGCGAGGAAG CGCTTGAAGAATGGCTCTGACGCCGGCCCGGTCGATGCGCCGAGCGCGAGCCGGAAATTCCTGAAGCCGGCAAAA CCACCTATCGTCGCAGCAGCCCTCGACGACGACGACCTGCGGCCTTGGTCGGAACGGTTCGGCCCCAGAAACCTG GATGAGCTGGCGGTACACAAGAAGAAGGTTACCGACGTCCGCAAGTGGCTGGAAGCCGTCACTACTGGCCGAATA AGGCAGCGGTTACTCGTGCTCAAAGGCGCCGCGGGCTCCGGCAAAACGACGACGGTGCGGCTGCTCGCCCAAGAC ATGGGCTTGGAGCTCTTGGAATGGAAGAACCCTGCGGGGTCCCACGGCATGCTTTCGCCGTCGGCCTCGGTGCAA TTTGACGAGTTTCTGGGTCGAGGCGGCAAATTTGGGATGCTCGACGTCGAGGCTCCTCAGGCTTCCGGCACGCCG ACCAGTTCCGGAGTCGCGGCTCAAGATCGGGCCAGGAGGATCATGCTCGTCGAAGAATTCCCAAACACCTTCTCC CGATCATCTTCCACTTTGGCCTCGTTTCGGAGGTCCATTCTTCAGTATCTCGCCGCGCCTGCACTCGCTCGATCC AAGTTGAACGGGAGACCGCAGCAGGAACCGGTCAACCCCATGGTGGTGATCATATCAGAGACTCTGTTGACTACG ACGTCAGCCACGGCAGACAGTCTGACTGCTCACCGGCTTCTCGGCCCCGAGATCCTGCGCCACCCGGGCGTCACG GTAATGGACTTCAACGCCATCGCCCCGACATTCCTGGCCAAGGCTATGGAGCTCATCGTGCAGAAAGAGGCTCGC AAGTCGGGACGCAGGAAGACGCCGGGGCCCTTGGTGCTGAATCGACTAGGCGAGATCGGAGACATCCGCAGCGCC ATATCGTCGCTAGAGTTTTTGTGTCTCAAAGGCGACCAGGAGGCAGACTGGGGGGCCAAGGTGGCGTTTACGAAG CAGAAGCGTGGCGTCCGAGATGCCATCGGCCTCACGCAGGGAGAAACGGAGACTCTCGAGGCGATAACGCAGCGC GAGGCCAGCCTCGGCATCTTCCACGCCGTCGGCAAAGTGGTGTACAATAAGCGAGACGAGGCACCGCCGCCCGAT GACACGGTCGAGAGGCTGCCGACGTTTCTGGCGGAGTTTGCGCGGCCCAACAGGTCCCAGGTGCCCATCGACAGC CTCATCGATGAGATTGGGACGGACACGCAAACGTTCATCTCTGCCCTGCACGAGAATTATGTACTGTCGTGCGAA AGCACTGAGCCGATGGACTCGTCGACATCGATGGACTACGTCAATGAGTGCATCGAGTATCTCTCCCTCAGCGAC CTGCTGTGCCCGTCCCGAGACGTCTTCTTTGGTGGCAACGGGTTTGGCCTTTCCGGGAGGGACGGTAGCGGTTAC CATCTACGGCAAGACGAGATGACGTTCCAGTTGGCGGTGCGCGGCATGCTGTTCTCGTTGCCGCACCCGGTCAAG CGGAAACCGACGGGCGTTCTCAAGGGCAGCGAGGCCTTCAAGATGTTCTACCCGACGAGCATCAAGCTATGGAAG GCAAAGGAGGAGATAGGGGGACTCCCGGCGACGACGACACCATGGACGGAGCGGGCGCGACGGCAGGCGACGGCA GCAAGCAGCGAGTCATCAAAGGCCGAGGCACGACCGCCCATGTGGCTCGGTAGCACGGCGCGGCGGGAGATGCTC CTCGATCGGCTTCCTTACATGGCGCACATGGCGCGCGGGCGCAGAAGCGGCATCCACGTGGGCGACCTGGAAAAG GTAGTGTCGATGCAGGGGACGACGGTGGCGACGGACGACGACGATGCGGTCGGCGGCGACGGAGACGGGCCCGTG GGCGAGGCGTGGGCAACGGATAGGCCGTCGGAGGAGGCCAGTCCGCGGAGGCGGCACGCTGGCGTCCGGGCTGGA GAGATGTCGGGCTTGGTGGCGCAGAAGCTGGTGCTGAGCGACGATGACATTGAGGACGATTAG
Gene	>Ophio5\|8165 ATGGCTCCGCCCGCGAAGCGCCGAAGACGTAACCCGGTCGAAGATTCCGACGACGAGGCCGAACAGCCACGGGCC AACAACACCCTGGCCAACTACCTGGTGTCGTCTCTGAGCTCTCCCACCAGACAAGAGCCGCCGAGCCCCGTAAAG AACAGCGTTACCGCGTCCACGGCGCAGAGAAGGCCCCGCGGAGCCGCGCCGCAAACAAACGGTGTCGGACTGAGC CCCAAAAGGGTCAGGGGTGGCGGCAGGTTCAACGAGAAGCCTAAGACGGCGGACCTCAAGACGCTCTTCTCAAAG CAGGCCCAGAGGACAACGAGGTCGTCCACTACCAACCCGAAGACGAGCACACCCATCGACGACATAATCAGTGAC CCCATCTCCGAGGATGACGAGATTTCGGAGCTCAAGGCCAGCTCCTCCAGCCTGGTCGGTCAGCATGCGAGGAAG CGCTTGAAGAATGGCTCTGACGCCGGCCCGGTCGATGCGCCGAGCGCGAGCCGGAAATTCCTGAAGCCGGCAAAA CCACCTATCGTCGCAGCAGCCCTCGACGACGACGACCTGCGGCCTTGGTCGGAACGGTTCGGCCCCAGAAACCTG GATGAGCTGGCGGTACACAAGAAGAAGGTTACCGACGTCCGCAAGTGGCTGGAAGCCGTCACTACTGGCCGAATA AGGCAGCGGTTACTCGTGCTCAAAGGCGCCGCGGGCTCCGGCAAAACGACGACGGTGCGGCTGCTCGCCCAAGAC ATGGGCTTGGAGCTCTTGGAATGGAAGAACCCTGCGGGGTCCCACGGCATGCTTTCGCCGTCGGCCTCGGTGCAA TTTGACGAGTTTCTGGGTCGAGGCGGCAAATTTGGGATGCTCGACGTCGAGGCTCCTCAGGCTTCCGGCACGCCG ACCAGTTCCGGAGTCGCGGCTCAAGATCGGGCCAGGAGGATCATGCTCGTCGAAGAATTCCCAAACACCTTCTCC CGATCATCTTCCACTTTGGCCTCGTTTCGGAGGTCCATTCTTCAGTATCTCGCCGCGCCTGCACTCGCTCGATCC AAGTTGAACGGGAGACCGCAGCAGGAACCGGTCAACCCCATGGTGGTGATCATATCAGAGACTCTGTTGACTACG ACGTCAGCCACGGCAGACAGTCTGACTGCTCACCGGCTTCTCGGCCCCGAGATCCTGCGCCACCCGGGCGTCACG GTAATGGACTTCAACGCCATCGCCCCGACATTCCTGGCCAAGGCTATGGAGCTCATCGTGCAGAAAGAGGCTCGC AAGTCGGGACGCAGGAAGACGCCGGGGCCCTTGGTGCTGAATCGACTAGGCGAGATCGGAGACATCCGCAGCGCC ATATCGTCGCTAGAGTTTTTGTGTCTCAAAGGCGACCAGGAGGCAGACTGGGGGGCCAAGGTGGCGTTTACGAAG CAGAAGCGTGGCGTCCGAGATGCCATCGGCCTCACGCAGGGAGAAACGGAGACTCTCGAGGCGATAACGCAGCGC GAGGCCAGCCTCGGCATCTTCCACGCCGTCGGCAAAGTGGTGTACAATAAGCGAGACGAGGCACCGCCGCCCGAT GACACGGTCGAGAGGCTGCCGACGTTTCTGGCGGAGTTTGCGCGGCCCAACAGGTCCCAGGTGCCCATCGACAGC CTCATCGATGAGATTGGGACGGACACGCAAACGTTCATCTCTGCCCTGCACGAGAATTATGTACTGTCGTGCGAA AGCACTGAGCCGATGGACTCGTCGACATCGATGGACTACGTCAATGAGTGCATCGAGTATCTCTCCCTCAGCGAC CTGCTGTGCCCGTCCCGAGACGTCTTCTTTGGTGGCAACGGGTTTGGCCTTTCCGGGAGGGACGGTAGCGGTTAC CATCTACGGCAAGACGAGATGACGTTCCAGTTGGCGGTGCGCGGCATGCTGTTCTCGTTGCCGCACCCGGTCAAG CGGAAACCGACGGGCGTTCTCAAGGGCAGCGAGGCCTTCAAGATGTTCTACCCGACGAGCATCAAGCTATGGAAG GCAAAGGAGGAGATAGGGGGACTCGTCGACGTGTGGTCGTCGCGGTTGCTCAGGGGGGAGGAGCAGCNNNGAAGG ATGGCGCCAACGCATTCCTGAAGCCGGCGACGACGACACCATGGACGGAGCGGGCGCGACGGCAGGCGACGGCAG CAAGCAGCGAGTCATCAAAGGCCGAGGCACGACCGCCCATGTGGCTCGGTAGCACGGCGCGGCGGGAGATGCTCC TCGATCGGCTTCCTTACATGGCGCACATGGCGCGCGGGCGCAGAAGCGGCATCCACGTGGGCGACCTGGAAAAGG TAGTGTCGATGCAGGGGACGACGGTGGCGACGGACGACGACGATGCGGTCGGCGGCGACGGAGACGGGCCCGTGG GCGAGGCGTGGGCAACGGATAGGCCGTCGGAGGAGGCCAGTCCGCGGAGGCGGCACGCTGGCGTCCGGGCTGGAG AGATGTCGGGCTTGGTGGCGCAGAAGCTGGTGCTGAGCGACGATGACATTGAGGACGATTAG

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