© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|8150 |
| Gene name | |
| Location | scaffold_87:36401..37791 |
| Strand | + |
| Gene length (bp) | 1390 |
| Transcript length (bp) | 1302 |
| Coding sequence length (bp) | 1299 |
| Protein length (aa) | 433 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00134 | Cyclin_N | Cyclin, N-terminal domain | 2.6E-10 | 99 | 217 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74627|CG1C_SCHPO | Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pch1 PE=1 SV=1 | 58 | 395 | 5.0E-52 |
| sp|Q2RAC5|CCT13_ORYSJ | Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 | 73 | 315 | 1.0E-26 |
| sp|Q2QQS5|CCT14_ORYSJ | Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 | 73 | 323 | 2.0E-26 |
| sp|Q9AS36|CCL11_ORYSJ | Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1 | 76 | 393 | 4.0E-26 |
| sp|O88874|CCNK_MOUSE | Cyclin-K OS=Mus musculus GN=Ccnk PE=1 SV=3 | 76 | 358 | 5.0E-26 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74627|CG1C_SCHPO | Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pch1 PE=1 SV=1 | 58 | 395 | 5.0E-52 |
| sp|Q2RAC5|CCT13_ORYSJ | Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 | 73 | 315 | 1.0E-26 |
| sp|Q2QQS5|CCT14_ORYSJ | Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 | 73 | 323 | 2.0E-26 |
| sp|Q9AS36|CCL11_ORYSJ | Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1 | 76 | 393 | 4.0E-26 |
| sp|O88874|CCNK_MOUSE | Cyclin-K OS=Mus musculus GN=Ccnk PE=1 SV=3 | 76 | 358 | 5.0E-26 |
| sp|Q9FKE6|CCT15_ARATH | Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2 | 75 | 315 | 8.0E-25 |
| sp|O75909|CCNK_HUMAN | Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2 | 76 | 310 | 1.0E-24 |
| sp|Q8GYM6|CCT14_ARATH | Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1 | 75 | 315 | 7.0E-24 |
| sp|Q6GN15|CCNL1_XENLA | Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2 | 46 | 299 | 1.0E-22 |
| sp|Q5BKF8|CCNL2_XENTR | Cyclin-L2 OS=Xenopus tropicalis GN=ccnl2 PE=2 SV=1 | 81 | 373 | 6.0E-22 |
| sp|Q5I0H5|CCNL2_RAT | Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=1 SV=2 | 81 | 423 | 1.0E-21 |
| sp|Q9JJA7|CCNL2_MOUSE | Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1 | 81 | 423 | 2.0E-21 |
| sp|Q7ZVX0|CCNL1_DANRE | Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1 | 52 | 320 | 3.0E-21 |
| sp|Q8RWV3|CCL11_ARATH | Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=1 SV=2 | 75 | 313 | 2.0E-20 |
| sp|Q5ZJP9|CCNL1_CHICK | Cyclin-L1 OS=Gallus gallus GN=CCNL1 PE=2 SV=1 | 86 | 368 | 4.0E-20 |
| sp|Q9UK58|CCNL1_HUMAN | Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1 | 68 | 275 | 4.0E-20 |
| sp|Q52KE7|CCNL1_MOUSE | Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=1 SV=1 | 77 | 275 | 4.0E-20 |
| sp|Q9R1Q2|CCNL1_RAT | Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1 | 77 | 275 | 5.0E-20 |
| sp|Q9QWV9|CCNT1_MOUSE | Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=3 | 76 | 296 | 8.0E-20 |
| sp|Q9XT26|CCNT1_HORSE | Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1 | 76 | 314 | 1.0E-19 |
| sp|O60563|CCNT1_HUMAN | Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1 | 76 | 296 | 2.0E-19 |
| sp|Q6T8E9|CCNT1_BOVIN | Cyclin-T1 OS=Bos taurus GN=CCNT1 PE=1 SV=1 | 76 | 296 | 2.0E-19 |
| sp|Q8HXN7|CCNT1_PANTR | Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1 | 71 | 296 | 2.0E-19 |
| sp|Q6Z7H3|CCT12_ORYSJ | Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2 | 64 | 291 | 2.0E-18 |
| sp|Q0E474|CCT11_ORYSJ | Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2 | 76 | 328 | 3.0E-18 |
| sp|O60583|CCNT2_HUMAN | Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2 | 76 | 295 | 6.0E-18 |
| sp|Q56YF8|CCT12_ARATH | Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2 | 62 | 259 | 1.0E-17 |
| sp|Q96S94|CCNL2_HUMAN | Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1 | 81 | 406 | 1.0E-15 |
| sp|Q8N1B3|FA58A_HUMAN | Cyclin-related protein FAM58A OS=Homo sapiens GN=FAM58A PE=1 SV=2 | 95 | 297 | 4.0E-15 |
| sp|O96433|CCNT_DROME | Cyclin-T OS=Drosophila melanogaster GN=CycT PE=1 SV=2 | 76 | 314 | 6.0E-15 |
| sp|Q8QZR8|FA58B_MOUSE | Cyclin-related protein FAM58B OS=Mus musculus GN=Fam58b PE=2 SV=2 | 95 | 297 | 2.0E-13 |
| sp|Q8LBC0|CCT13_ARATH | Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2 | 75 | 291 | 4.0E-13 |
| sp|Q9C8P7|CCT11_ARATH | Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1 | 76 | 315 | 3.0E-12 |
| sp|Q4QQW5|FA58A_RAT | Cyclin-related protein FAM58A OS=Rattus norvegicus GN=Fam58a PE=2 SV=1 | 108 | 297 | 4.0E-12 |
| sp|Q6NRK9|FA58A_XENLA | Cyclin-related protein FAM58A OS=Xenopus laevis GN=fam58a PE=2 SV=2 | 104 | 274 | 2.0E-11 |
| sp|Q5RD50|CCNL1_PONAB | Cyclin-L1 OS=Pongo abelii GN=CCNL1 PE=3 SV=1 | 68 | 173 | 2.0E-10 |
| sp|Q9FJK6|CCC11_ARATH | Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2 | 74 | 286 | 4.0E-10 |
| sp|Q503D6|FA58A_DANRE | Cyclin-related protein FAM58A OS=Danio rerio GN=fam58a PE=2 SV=1 | 108 | 247 | 2.0E-09 |
| sp|P93411|CCC11_ORYSJ | Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2 SV=1 | 92 | 282 | 3.0E-09 |
| sp|Q9FJK7|CCC12_ARATH | Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1 | 80 | 297 | 2.0E-08 |
| sp|P34425|CCNT1_CAEEL | Cyclin-T1.1 OS=Caenorhabditis elegans GN=cit-1.1 PE=3 SV=1 | 56 | 291 | 9.0E-08 |
| sp|Q16JA2|CCNC_AEDAE | Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1 | 107 | 300 | 2.0E-07 |
| sp|Q7QB13|CCNC_ANOGA | Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2 | 107 | 300 | 6.0E-07 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.3152 | 0.9174 | 0.2243 | 0.0457 | 0.0631 | 0.0039 | 0.0126 | 0.0124 | 0.0216 | 0.0008 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 108 | 130 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5803 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|8150 MASIDRYRPPREGYQPPSLPGAVRNEQMSRSPPHRREVPPAAPTPPQHSARTSPPRSSAQPGQQSPTSSVRRGYQ WSFTPEEVSSSPTIVHGVAPAEERLRRAKGVNFIYQAGVVLDLPQITLWVAGVFFHRFFMRKSMVEEKGGIHHYN IAATALFLANKVEENCRKTKDIIIAVVKVAQKNAKLVIDEQSKEYWRWRDSILMYEESMLEHLTFDLMIDNPYRH LFEILGQLDIVHNKNLRQAAWAFCNDACLTALPLLIEARDVAISAIFFASVHTSQQVDDIHGEPWWKYLNGDEER CTRAIEVMRQFYTENPLRKQNPSLPSPPYDLENTRRRADALMSQPDALSSAGGTPMVDRASRSPAPKTNGTERGA EAKERDAKTAPPPRGVEGADTVTRSTPKRREADVDMSSSQERAEKRTRLSEDEGEVEE |
| Coding | >Ophio5|8150 ATGGCGAGCATCGACCGCTACCGGCCTCCTCGCGAAGGCTACCAGCCGCCGAGTCTTCCGGGAGCTGTTCGAAAC GAGCAGATGTCGCGATCCCCTCCTCACCGGCGCGAGGTTCCGCCTGCTGCGCCGACTCCGCCCCAGCACAGCGCG CGGACATCTCCGCCGCGATCCAGCGCCCAACCCGGCCAGCAGTCGCCCACGTCATCCGTTAGGCGAGGCTATCAG TGGTCTTTTACGCCGGAGGAGGTCTCCAGTTCCCCGACCATCGTCCACGGCGTGGCCCCGGCCGAGGAGAGGCTG CGCAGGGCCAAGGGCGTTAACTTCATCTACCAGGCCGGCGTCGTGCTCGACCTGCCGCAGATCACCCTATGGGTA GCCGGCGTTTTCTTCCACAGGTTCTTCATGCGTAAGAGCATGGTTGAGGAAAAGGGCGGCATTCATCACTACAAC ATCGCCGCCACCGCGCTTTTCCTTGCAAATAAGGTCGAGGAGAACTGCCGAAAAACCAAAGACATCATCATCGCG GTGGTCAAGGTCGCACAGAAAAACGCCAAGCTCGTCATCGATGAGCAGAGCAAGGAGTATTGGCGATGGAGGGAC AGCATCCTCATGTACGAAGAGAGCATGCTGGAGCACCTCACCTTTGACCTCATGATAGATAACCCCTATCGACAT CTCTTTGAGATCCTCGGACAGCTCGACATTGTTCACAATAAGAACTTGAGACAGGCTGCATGGGCATTCTGCAAC GACGCGTGCCTCACGGCGTTGCCACTGCTCATCGAGGCAAGGGACGTCGCCATCAGTGCCATCTTCTTCGCCAGC GTTCATACGAGCCAACAGGTCGACGACATCCACGGCGAACCGTGGTGGAAGTACCTCAACGGGGACGAGGAGCGC TGCACGAGGGCCATCGAGGTTATGCGCCAATTCTACACTGAGAATCCACTCAGAAAGCAGAATCCATCGCTGCCA TCACCTCCCTACGACCTGGAGAACACGAGACGGAGGGCGGACGCGCTCATGAGCCAGCCGGACGCGCTGTCGTCG GCGGGAGGGACACCCATGGTCGATCGAGCCAGCCGCAGCCCGGCGCCCAAGACTAACGGCACCGAAAGGGGCGCC GAAGCCAAGGAGCGGGATGCGAAAACGGCACCACCGCCCCGTGGGGTGGAAGGTGCCGATACCGTTACGAGATCA ACGCCGAAGAGGAGAGAGGCAGATGTGGACATGAGCTCCAGCCAGGAGCGAGCTGAGAAACGAACCAGGCTGTCG GAGGACGAAGGCGAGGTAGAGGAG |
| Transcript | >Ophio5|8150 ATGGCGAGCATCGACCGCTACCGGCCTCCTCGCGAAGGCTACCAGCCGCCGAGTCTTCCGGGAGCTGTTCGAAAC GAGCAGATGTCGCGATCCCCTCCTCACCGGCGCGAGGTTCCGCCTGCTGCGCCGACTCCGCCCCAGCACAGCGCG CGGACATCTCCGCCGCGATCCAGCGCCCAACCCGGCCAGCAGTCGCCCACGTCATCCGTTAGGCGAGGCTATCAG TGGTCTTTTACGCCGGAGGAGGTCTCCAGTTCCCCGACCATCGTCCACGGCGTGGCCCCGGCCGAGGAGAGGCTG CGCAGGGCCAAGGGCGTTAACTTCATCTACCAGGCCGGCGTCGTGCTCGACCTGCCGCAGATCACCCTATGGGTA GCCGGCGTTTTCTTCCACAGGTTCTTCATGCGTAAGAGCATGGTTGAGGAAAAGGGCGGCATTCATCACTACAAC ATCGCCGCCACCGCGCTTTTCCTTGCAAATAAGGTCGAGGAGAACTGCCGAAAAACCAAAGACATCATCATCGCG GTGGTCAAGGTCGCACAGAAAAACGCCAAGCTCGTCATCGATGAGCAGAGCAAGGAGTATTGGCGATGGAGGGAC AGCATCCTCATGTACGAAGAGAGCATGCTGGAGCACCTCACCTTTGACCTCATGATAGATAACCCCTATCGACAT CTCTTTGAGATCCTCGGACAGCTCGACATTGTTCACAATAAGAACTTGAGACAGGCTGCATGGGCATTCTGCAAC GACGCGTGCCTCACGGCGTTGCCACTGCTCATCGAGGCAAGGGACGTCGCCATCAGTGCCATCTTCTTCGCCAGC GTTCATACGAGCCAACAGGTCGACGACATCCACGGCGAACCGTGGTGGAAGTACCTCAACGGGGACGAGGAGCGC TGCACGAGGGCCATCGAGGTTATGCGCCAATTCTACACTGAGAATCCACTCAGAAAGCAGAATCCATCGCTGCCA TCACCTCCCTACGACCTGGAGAACACGAGACGGAGGGCGGACGCGCTCATGAGCCAGCCGGACGCGCTGTCGTCG GCGGGAGGGACACCCATGGTCGATCGAGCCAGCCGCAGCCCGGCGCCCAAGACTAACGGCACCGAAAGGGGCGCC GAAGCCAAGGAGCGGGATGCGAAAACGGCACCACCGCCCCGTGGGGTGGAAGGTGCCGATACCGTTACGAGATCA ACGCCGAAGAGGAGAGAGGCAGATGTGGACATGAGCTCCAGCCAGGAGCGAGCTGAGAAACGAACCAGGCTGTCG GAGGACGAAGGCGAGGTAGAGGAGTGA |
| Gene | >Ophio5|8150 ATGGCGAGCATCGACCGCTACCGGCCTCCTCGCGAAGGCTACCAGCCGCCGAGTCTTCCGGGAGCTGTTCGAAAC GAGCAGATGTCGCGATCCCCTCCTCACCGGCGCGAGGTTCCGCCTGCTGCGCCGACTCCGCCCCAGCACAGCGCG CGGACATCTCCGCCGCGATCCAGCGCCCAACCCGGCCAGCAGTCGCCCACGTCATCCGTTAGGCGAGGCTATCAG TGGTCTTTTACGCCGGAGGAGGTCTCCAGTTCCCCGACCATCGTCCACGGCGTGGCCCCGGCCGAGGAGAGGCTG CGCAGGGCCAAGGGCGTTAACTTCATCTACCAGGCCGGCGTCGTGCTCGACCTGCCGCAGATCACCCTATGGGTA GCCGGCGTTTTCTTCCACAGGTTCTTCATGCGTAAGAGCATGGTTGAGGAAAAGGGCGGCATTCATCACTACGTG AGCATTCCTTTTCGTCGGCGCGGAGATGTCACCGTCTCTCCCGGCCTCCTTCCCTTCCGCCGAAGAATGGCTGAC GACGTTGTAGAACATCGCCGCCACCGCGCTTTTCCTTGCAAATAAGGTCGAGGAGAACTGCCGAAAAACCAAAGA CATCATCATCGCGGTGGTCAAGGTCGCACAGAAAAACGCCAAGCTCGTCATCGATGAGCAGAGCAAGGAGTATTG GCGATGGAGGGACAGCATCCTCATGTACGAAGAGAGCATGCTGGAGCACCTCACCTTTGACCTCATGATAGATAA CCCCTATCGACATCTCTTTGAGATCCTCGGACAGCTCGACATTGTTCACAATAAGAACTTGAGACAGGCTGCATG GGCATTCTGCAACGACGCGTGCCTCACGGCGTTGCCACTGCTCATCGAGGCAAGGGACGTCGCCATCAGTGCCAT CTTCTTCGCCAGCGTTCATACGAGCCAACAGGTCGACGACATCCACGGCGAACCGTGGTGGAAGTACCTCAACGG GGACGAGGAGCGCTGCACGAGGGCCATCGAGGTTATGCGCCAATTCTACACTGAGAATCCACTCAGAAAGCAGAA TCCATCGCTGCCATCACCTCCCTACGACCTGGAGAACACGAGACGGAGGGCGGACGCGCTCATGAGCCAGCCGGA CGCGCTGTCGTCGGCGGGAGGGACACCCATGGTCGATCGAGCCAGCCGCAGCCCGGCGCCCAAGACTAACGGCAC CGAAAGGGGCGCCGAAGCCAAGGAGCGGGATGCGAAAACGGCACCACCGCCCCGTGGGGTGGAAGGTGCCGATAC CGTTACGAGATCAACGCCGAAGAGGAGAGAGGCAGATGTGGACATGAGCTCCAGCCAGGAGCGAGCTGAGAAACG AACCAGGCTGTCGGAGGACGAAGGCGAGGTAGAGGAGTGA |