Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8137
Gene name
Locationscaffold_87:4196..5247
Strand+
Gene length (bp)1051
Transcript length (bp)939
Coding sequence length (bp)936
Protein length (aa) 312

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13668 Ferritin_2 Ferritin-like domain 2.4E-45 30 163

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P53693|RDS1_SCHPO Protein rds1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rds1 PE=2 SV=2 31 266 4.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8137
MFRTLTLLCLATFGAAVPVEEAKKESSQIGDVQILNYALTLEFLERAFYVDGLKNYTANDFAQAGFGRDVYDKLV
RVRDDEKAHVKFLSGALGSKAIAEPKFSFPYSNPHDFVGLASVLEGVGVAAYLGAAASITNKEYLSAAGSILTVE
ARHSSYLRSILGEEPTPTPYDTSLDFNQVFSLAAAFTTFPPGTKLPFKAFPTLTATSSNKNGKFCPGKGSITFKK
GKEPYNGKGKVYAVLYSGQQTYYVPAESSGSNTYTAKMPGEGYASKDEPAPAGQVYAILSTADGKETKASDENTI
AGVAILEVASRC
Coding >Ophio5|8137
ATGTTCCGAACTCTCACCCTTCTCTGCCTTGCCACCTTTGGCGCCGCGGTGCCGGTCGAGGAGGCCAAGAAAGAG
AGCTCTCAGATCGGAGACGTACAGATCCTCAACTATGCCTTGACTCTGGAGTTTCTGGAGCGCGCATTCTACGTC
GATGGCTTGAAGAACTACACGGCCAATGACTTTGCCCAGGCTGGCTTTGGTCGTGACGTGTACGACAAGCTCGTC
CGCGTGCGCGATGATGAAAAGGCGCACGTCAAGTTCCTGTCTGGGGCTCTTGGAAGCAAAGCCATTGCGGAACCT
AAATTCTCATTCCCCTACAGCAATCCTCATGATTTCGTCGGCCTCGCTAGCGTTCTCGAGGGCGTGGGCGTTGCC
GCCTACCTCGGCGCCGCCGCGTCCATCACCAACAAGGAATACTTGTCGGCTGCCGGCTCTATCCTCACCGTTGAG
GCGCGACACTCGTCGTACCTCCGGTCCATCTTGGGCGAGGAACCGACCCCAACACCCTACGACACTTCCCTCGAC
TTCAACCAGGTCTTTTCCCTCGCCGCCGCCTTCACCACTTTCCCTCCCGGCACCAAGCTCCCCTTCAAGGCCTTC
CCCACTCTCACGGCGACTTCTTCCAACAAGAACGGCAAATTCTGCCCCGGCAAGGGCTCCATCACCTTTAAGAAG
GGCAAGGAGCCGTACAATGGCAAGGGCAAGGTCTACGCTGTCCTCTACTCCGGCCAGCAGACGTACTACGTTCCG
GCAGAGTCTTCGGGATCAAACACGTATACGGCCAAGATGCCGGGTGAAGGCTACGCCTCCAAGGACGAGCCGGCA
CCCGCAGGCCAAGTCTATGCTATCCTGAGCACGGCCGATGGTAAGGAGACCAAGGCCAGCGATGAGAACACCATC
GCCGGAGTGGCCATCCTGGAGGTTGCGTCGCGGTGT
Transcript >Ophio5|8137
ATGTTCCGAACTCTCACCCTTCTCTGCCTTGCCACCTTTGGCGCCGCGGTGCCGGTCGAGGAGGCCAAGAAAGAG
AGCTCTCAGATCGGAGACGTACAGATCCTCAACTATGCCTTGACTCTGGAGTTTCTGGAGCGCGCATTCTACGTC
GATGGCTTGAAGAACTACACGGCCAATGACTTTGCCCAGGCTGGCTTTGGTCGTGACGTGTACGACAAGCTCGTC
CGCGTGCGCGATGATGAAAAGGCGCACGTCAAGTTCCTGTCTGGGGCTCTTGGAAGCAAAGCCATTGCGGAACCT
AAATTCTCATTCCCCTACAGCAATCCTCATGATTTCGTCGGCCTCGCTAGCGTTCTCGAGGGCGTGGGCGTTGCC
GCCTACCTCGGCGCCGCCGCGTCCATCACCAACAAGGAATACTTGTCGGCTGCCGGCTCTATCCTCACCGTTGAG
GCGCGACACTCGTCGTACCTCCGGTCCATCTTGGGCGAGGAACCGACCCCAACACCCTACGACACTTCCCTCGAC
TTCAACCAGGTCTTTTCCCTCGCCGCCGCCTTCACCACTTTCCCTCCCGGCACCAAGCTCCCCTTCAAGGCCTTC
CCCACTCTCACGGCGACTTCTTCCAACAAGAACGGCAAATTCTGCCCCGGCAAGGGCTCCATCACCTTTAAGAAG
GGCAAGGAGCCGTACAATGGCAAGGGCAAGGTCTACGCTGTCCTCTACTCCGGCCAGCAGACGTACTACGTTCCG
GCAGAGTCTTCGGGATCAAACACGTATACGGCCAAGATGCCGGGTGAAGGCTACGCCTCCAAGGACGAGCCGGCA
CCCGCAGGCCAAGTCTATGCTATCCTGAGCACGGCCGATGGTAAGGAGACCAAGGCCAGCGATGAGAACACCATC
GCCGGAGTGGCCATCCTGGAGGTTGCGTCGCGGTGTTAA
Gene >Ophio5|8137
ATGTTCCGAACTCTCACCCTTCTCTGCCTTGCCACCTTTGGCGCCGCGGTGCCGGTCGAGGAGGCCAAGAAAGAG
AGCTCTCAGATCGGAGACGTACAGATCCTCAACTATGCCTTGACTCTGGAGTTTCTGGAGCGCGCATTCTACGTC
GATGGCTTGAAGAACTACACGGCCAATGACTTTGCCCAGGCTGGCTTTGGTCGTGACGTGTACGACAAGCTCGTC
CGCGTGCGCGATGATGAAAAGGTAATCAAGAGCCCTCCTGGGGTGTGCCGACGACGGGAGAACTGACAATGAGTT
AGGCGCACGTCAAGTTCCTGTCTGGGGCTCTTGGAAGCAAAGCCATTGCGGAACCTAAATTCTCATTCCCCTACA
GCAATCCTCATGATTTCGTCGGCCTCGCTAGCGTTCTCGAGGGCGTGGGCGTTGCCGCCTACCTCGGCGCCGCCG
CGTCCATCACCAACAAGGAATACTTGTCGGCTGCCGGCTCTATCCTCACCGTTGAGGCGCGACACTCGTCGTACC
TCCGGTCCATCTTGGGCGAGGAACCGACCCCAACACCCTACGACACTTCCCTCGACTTCAACCAGGTCTTTTCCC
TCGCCGCCGCCTTCACCACTTTCCCTCCCGGCACCAAGCTCCCCTTCAAGGCCTTCCCCACTCTCACGGCGACTT
CTTCCAACAAGAACGGCAAATTCTGCCCCGGCAAGGGCTCCATCACCTTTAAGAAGGGCAAGGAGCCGTACAATG
GCAAGGGCAAGGTCTACGCTGTCCTCTACTCCGGCCAGCAGACGTACTACGTTCCGGCAGAGTCTTCGGGATCAA
ACACGGTAAGTTCTCCTTGCTACTCCCATCCGTCGACGCCCCCGCTGACGCCTCGACTCAGTATACGGCCAAGAT
GCCGGGTGAAGGCTACGCCTCCAAGGACGAGCCGGCACCCGCAGGCCAAGTCTATGCTATCCTGAGCACGGCCGA
TGGTAAGGAGACCAAGGCCAGCGATGAGAACACCATCGCCGGAGTGGCCATCCTGGAGGTTGCGTCGCGGTGTTA
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail