Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8101
Gene name
Locationscaffold_86:27170..28055
Strand+
Gene length (bp)885
Transcript length (bp)885
Coding sequence length (bp)882
Protein length (aa) 294

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06148 COG2 COG (conserved oligomeric Golgi) complex component, COG2 2.3E-22 34 162

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 32.80 14.75 50.85
CcL In ants, during behavior modification 53.35 22.80 83.89
CcD In ants, recently dead 13.81 4.65 22.96

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.079104 no
SC16a CcD 0.003199 yes
CcL CcD 0.000286 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8101
MAPARAPSPPSSSSSSSFAAEDGASLPFPAALPRSDFLAADFHPAAYLSALPHRHQTLEDLRADLRDRSSAISAE
LLELVNANYTSFLSLGSELDGGDDRVEDLRVALLGFRRAVDEIKANVARRRCETHALNVKLRRMRLSVARARAML
DLSDRLSALEESLAVATDGQEGPDESVAVEGADDDDDVDESDDADADEHPHGLLGSPPAKLLQSAKECRRLHALA
ASLDLEHPFVTKMQRRLSRCRSTLLLDLSNALKEARAAGRRADGRLMRYLEIYRVLETPRDAVKALRNH
Coding >Ophio5|8101
ATGGCTCCCGCCCGCGCCCCGTCTCCCCCCTCCTCCTCCTCCTCCTCCTCCTTCGCGGCGGAAGACGGCGCTTCC
CTCCCCTTCCCCGCCGCGCTGCCACGTTCCGACTTCCTGGCCGCCGACTTCCACCCCGCCGCCTACCTCTCGGCG
CTGCCACATCGCCACCAGACACTCGAGGATCTTCGCGCCGACCTCCGAGACCGCAGCAGCGCCATCAGCGCAGAG
TTGCTAGAGCTCGTCAACGCAAACTATACTTCTTTCCTATCTCTCGGTAGCGAGCTTGATGGCGGCGACGACCGA
GTTGAAGACCTGCGTGTCGCCCTTCTGGGCTTCCGCCGCGCCGTCGACGAGATCAAGGCCAACGTTGCTCGGCGT
CGCTGCGAGACGCACGCTCTCAACGTCAAATTGCGGCGCATGCGTCTGTCTGTCGCCCGGGCGCGCGCTATGCTT
GACCTCTCCGATCGCCTTTCTGCCCTCGAGGAGAGCCTGGCTGTCGCGACTGATGGCCAAGAGGGGCCTGACGAG
TCCGTTGCTGTCGAAGGCGCCGACGACGACGACGACGTCGATGAGTCCGATGACGCCGACGCCGACGAGCATCCA
CACGGCCTGCTTGGTAGTCCGCCTGCTAAGCTCCTGCAGTCTGCTAAGGAATGTCGTCGTCTCCATGCGCTGGCG
GCCTCACTCGATCTCGAGCACCCTTTCGTCACCAAGATGCAGCGTCGTCTTTCGAGATGCCGCAGCACCTTGCTT
CTCGACTTGTCCAACGCGCTCAAGGAGGCAAGGGCCGCCGGCCGCAGAGCAGACGGCCGGCTCATGCGATATTTA
GAGATATACCGTGTCTTGGAAACACCGCGAGACGCTGTCAAGGCCCTCCGTAATCAT
Transcript >Ophio5|8101
ATGGCTCCCGCCCGCGCCCCGTCTCCCCCCTCCTCCTCCTCCTCCTCCTCCTTCGCGGCGGAAGACGGCGCTTCC
CTCCCCTTCCCCGCCGCGCTGCCACGTTCCGACTTCCTGGCCGCCGACTTCCACCCCGCCGCCTACCTCTCGGCG
CTGCCACATCGCCACCAGACACTCGAGGATCTTCGCGCCGACCTCCGAGACCGCAGCAGCGCCATCAGCGCAGAG
TTGCTAGAGCTCGTCAACGCAAACTATACTTCTTTCCTATCTCTCGGTAGCGAGCTTGATGGCGGCGACGACCGA
GTTGAAGACCTGCGTGTCGCCCTTCTGGGCTTCCGCCGCGCCGTCGACGAGATCAAGGCCAACGTTGCTCGGCGT
CGCTGCGAGACGCACGCTCTCAACGTCAAATTGCGGCGCATGCGTCTGTCTGTCGCCCGGGCGCGCGCTATGCTT
GACCTCTCCGATCGCCTTTCTGCCCTCGAGGAGAGCCTGGCTGTCGCGACTGATGGCCAAGAGGGGCCTGACGAG
TCCGTTGCTGTCGAAGGCGCCGACGACGACGACGACGTCGATGAGTCCGATGACGCCGACGCCGACGAGCATCCA
CACGGCCTGCTTGGTAGTCCGCCTGCTAAGCTCCTGCAGTCTGCTAAGGAATGTCGTCGTCTCCATGCGCTGGCG
GCCTCACTCGATCTCGAGCACCCTTTCGTCACCAAGATGCAGCGTCGTCTTTCGAGATGCCGCAGCACCTTGCTT
CTCGACTTGTCCAACGCGCTCAAGGAGGCAAGGGCCGCCGGCCGCAGAGCAGACGGCCGGCTCATGCGATATTTA
GAGATATACCGTGTCTTGGAAACACCGCGAGACGCTGTCAAGGCCCTCCGTAATCATTGA
Gene >Ophio5|8101
ATGGCTCCCGCCCGCGCCCCGTCTCCCCCCTCCTCCTCCTCCTCCTCCTCCTTCGCGGCGGAAGACGGCGCTTCC
CTCCCCTTCCCCGCCGCGCTGCCACGTTCCGACTTCCTGGCCGCCGACTTCCACCCCGCCGCCTACCTCTCGGCG
CTGCCACATCGCCACCAGACACTCGAGGATCTTCGCGCCGACCTCCGAGACCGCAGCAGCGCCATCAGCGCAGAG
TTGCTAGAGCTCGTCAACGCAAACTATACTTCTTTCCTATCTCTCGGTAGCGAGCTTGATGGCGGCGACGACCGA
GTTGAAGACCTGCGTGTCGCCCTTCTGGGCTTCCGCCGCGCCGTCGACGAGATCAAGGCCAACGTTGCTCGGCGT
CGCTGCGAGACGCACGCTCTCAACGTCAAATTGCGGCGCATGCGTCTGTCTGTCGCCCGGGCGCGCGCTATGCTT
GACCTCTCCGATCGCCTTTCTGCCCTCGAGGAGAGCCTGGCTGTCGCGACTGATGGCCAAGAGGGGCCTGACGAG
TCCGTTGCTGTCGAAGGCGCCGACGACGACGACGACGTCGATGAGTCCGATGACGCCGACGCCGACGAGCATCCA
CACGGCCTGCTTGGTAGTCCGCCTGCTAAGCTCCTGCAGTCTGCTAAGGAATGTCGTCGTCTCCATGCGCTGGCG
GCCTCACTCGATCTCGAGCACCCTTTCGTCACCAAGATGCAGCGTCGTCTTTCGAGATGCCGCAGCACCTTGCTT
CTCGACTTGTCCAACGCGCTCAAGGAGGCAAGGGCCGCCGGCCGCAGAGCAGACGGCCGGCTCATGCGATATTTA
GAGATATACCGTGTCTTGGAAACACCGCGAGACGCTGTCAAGGCCCTCCGTAATCATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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