© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|810 |
| Gene name | |
| Location | scaffold_123:5976..6727 |
| Strand | - |
| Gene length (bp) | 751 |
| Transcript length (bp) | 573 |
| Coding sequence length (bp) | 570 |
| Protein length (aa) | 190 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03248 | Rer1 | Rer1 family | 4.3E-78 | 17 | 186 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q498C8|RER1_RAT | Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=1 SV=1 | 19 | 186 | 3.0E-68 |
| sp|Q9CQU3|RER1_MOUSE | Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1 | 19 | 186 | 3.0E-68 |
| sp|Q5ZHM5|RER1_CHICK | Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1 | 19 | 186 | 8.0E-68 |
| sp|A5PJ65|RER1_BOVIN | Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2 | 19 | 186 | 1.0E-67 |
| sp|Q5R5U4|RER1_PONAB | Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1 | 19 | 186 | 2.0E-67 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q498C8|RER1_RAT | Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=1 SV=1 | 19 | 186 | 3.0E-68 |
| sp|Q9CQU3|RER1_MOUSE | Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1 | 19 | 186 | 3.0E-68 |
| sp|Q5ZHM5|RER1_CHICK | Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1 | 19 | 186 | 8.0E-68 |
| sp|A5PJ65|RER1_BOVIN | Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2 | 19 | 186 | 1.0E-67 |
| sp|Q5R5U4|RER1_PONAB | Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1 | 19 | 186 | 2.0E-67 |
| sp|O15258|RER1_HUMAN | Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1 | 19 | 186 | 2.0E-67 |
| sp|Q10358|RER1_SCHPO | Protein rer1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rer1 PE=3 SV=1 | 8 | 188 | 2.0E-63 |
| sp|O48670|RER1A_ARATH | Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=1 SV=1 | 1 | 189 | 6.0E-63 |
| sp|P25560|RER1_YEAST | Protein RER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RER1 PE=1 SV=2 | 1 | 189 | 5.0E-62 |
| sp|Q9ZWI7|RER1C_ARATH | Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1 | 10 | 188 | 7.0E-62 |
| sp|P79003|RER1_SACPS | Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1 | 1 | 189 | 2.0E-61 |
| sp|O48671|RER1B_ARATH | Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=1 SV=2 | 1 | 186 | 9.0E-61 |
| sp|Q54D10|RER1_DICDI | Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1 | 18 | 189 | 4.0E-56 |
| sp|P52879|RER1_CAEEL | Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=3 SV=1 | 20 | 182 | 2.0E-49 |
| sp|Q9ZPV7|RER1D_ARATH | Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2 | 2 | 182 | 4.0E-49 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 35 | 57 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 141 | 163 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|810 MDAPESEQTPFASVTAQTSKLQRHYQALLDRSTPFVLYRWFGTGFLLFLFFLRILFAQGWYIVAYALGIYLLNLF LAFLQPKFDPSNDALDNEMEDGAVGTLPTKQDEEFKPFIRRLPEFKFWYWATRAVVISFTCTFFEIFNVPVFWPV LVMYWIILFVLTMRKQIQHMVKYRYVPFTIGKKNYNKNSP |
| Coding | >Ophio5|810 ATGGACGCGCCCGAGTCAGAACAGACGCCGTTTGCGAGCGTGACGGCGCAGACGTCGAAGCTGCAGAGGCATTAT CAGGCGCTTCTGGACCGGTCGACGCCCTTTGTGCTGTATCGATGGTTCGGCACCGGCTTCCTACTGTTCCTCTTC TTCCTGCGCATTCTCTTCGCGCAGGGCTGGTACATCGTCGCCTATGCCCTCGGCATTTATCTTCTCAACCTGTTC CTCGCCTTCCTCCAGCCCAAGTTCGACCCTTCCAATGACGCGCTCGACAATGAGATGGAGGATGGCGCAGTCGGC ACACTGCCCACCAAGCAGGATGAAGAGTTCAAGCCCTTCATCCGGCGCCTGCCCGAGTTCAAGTTCTGGTACTGG GCGACTCGCGCCGTCGTCATCTCCTTTACCTGTACCTTTTTCGAGATCTTTAACGTGCCCGTCTTCTGGCCCGTT CTCGTCATGTACTGGATCATTCTCTTCGTCTTGACGATGCGCAAGCAGATCCAGCACATGGTCAAGTATCGCTAC GTGCCCTTTACCATTGGCAAGAAGAACTACAACAAGAACAGCCCT |
| Transcript | >Ophio5|810 ATGGACGCGCCCGAGTCAGAACAGACGCCGTTTGCGAGCGTGACGGCGCAGACGTCGAAGCTGCAGAGGCATTAT CAGGCGCTTCTGGACCGGTCGACGCCCTTTGTGCTGTATCGATGGTTCGGCACCGGCTTCCTACTGTTCCTCTTC TTCCTGCGCATTCTCTTCGCGCAGGGCTGGTACATCGTCGCCTATGCCCTCGGCATTTATCTTCTCAACCTGTTC CTCGCCTTCCTCCAGCCCAAGTTCGACCCTTCCAATGACGCGCTCGACAATGAGATGGAGGATGGCGCAGTCGGC ACACTGCCCACCAAGCAGGATGAAGAGTTCAAGCCCTTCATCCGGCGCCTGCCCGAGTTCAAGTTCTGGTACTGG GCGACTCGCGCCGTCGTCATCTCCTTTACCTGTACCTTTTTCGAGATCTTTAACGTGCCCGTCTTCTGGCCCGTT CTCGTCATGTACTGGATCATTCTCTTCGTCTTGACGATGCGCAAGCAGATCCAGCACATGGTCAAGTATCGCTAC GTGCCCTTTACCATTGGCAAGAAGAACTACAACAAGAACAGCCCTTGA |
| Gene | >Ophio5|810 ATGGACGCGCCCGAGTCAGAACAGACGCCGTTTGCGAGCGTGACGGCGCAGACGTCGAAGCTGCAGAGGGTACGA TTATCGTGACTTGGCACCGCCGGTGGGCGGCGCGCGCTGACGAACGAGCAGCATTATCAGGCGCTTCTGGACCGG TCGACGCCCTTTGTGCTGTATCGATGGTTCGGCACCGGCTTCCTACTGTTCCTCTTCTTCCTGCGCATTCTCTTC GCGCAGGGCTGGTACATCGGTGCGTCGCAAATTTTTAAATTAATTTTTTTCACGCATCGAGGCACTCGCTAACGC TGCAAACCCAGTCGCCTATGCCCTCGGCATTTATCTTCTCAACCTGTTCCTCGCCTTCCTCCAGCCCAAGTTCGA CCCTTCCAATGACGCGCTCGACAATGAGATGGAGGATGGCGCAGTCGGCACACTGCCCACCAAGCAGGATGAAGA GTTCAAGCCCTTCATCCGGCGCCTGCCCGAGTTCAAGTTCTGGTACTGGGCGACTCGCGCCGTCGTCATCTCCTT TACCTGTACCTTTTTCGAGATCTTTAACGTGCCCGTCTTCTGGCCCGTTCTCGTCATGTACTGGATCATTCTCTT CGTCTTGACGAGTAAGGGTCCTCTCTCCCCAACATGTGCCGCTCTCACTGACTGGGGCTTCGCAGTGCGCAAGCA GATCCAGCACATGGTCAAGTATCGCTACGTGCCCTTTACCATTGGCAAGAAGAACTACAACAAGAACAGCCCTTG A |