© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|808 |
| Gene name | |
| Location | scaffold_123:798..2621 |
| Strand | + |
| Gene length (bp) | 1823 |
| Transcript length (bp) | 1614 |
| Coding sequence length (bp) | 1611 |
| Protein length (aa) | 537 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00999 | Na_H_Exchanger | Sodium/hydrogen exchanger family | 6.6E-51 | 22 | 452 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99271|NAH1_YEAST | Na(+)/H(+) antiporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NHA1 PE=1 SV=1 | 11 | 457 | 3.0E-86 |
| sp|O14123|NAH2_SCHPO | Probable Na(+)/H(+) antiporter C3A11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sod22 PE=1 SV=1 | 11 | 457 | 5.0E-85 |
| sp|O42701|NAH2_ZYGRO | Na(+)/H(+) antiporter 2 OS=Zygosaccharomyces rouxii GN=SOD22 PE=3 SV=1 | 11 | 460 | 9.0E-82 |
| sp|Q99173|NAH1_ZYGRO | Na(+)/H(+) antiporter 1 OS=Zygosaccharomyces rouxii GN=SOD2 PE=3 SV=1 | 11 | 457 | 2.0E-81 |
| sp|P36606|NAH_SCHPO | Na(+)/H(+) antiporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sod2 PE=1 SV=1 | 11 | 474 | 7.0E-61 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006812 | cation transport | Yes |
| GO:0015299 | solute:proton antiporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0008150 | biological_process | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0022804 | active transmembrane transporter activity | No |
| GO:0015297 | antiporter activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0015298 | solute:cation antiporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0015291 | secondary active transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 45 | 64 | 19 |
| 3 | 122 | 144 | 22 |
| 4 | 149 | 171 | 22 |
| 5 | 192 | 214 | 22 |
| 6 | 229 | 251 | 22 |
| 7 | 271 | 290 | 19 |
| 8 | 342 | 364 | 22 |
| 9 | 385 | 407 | 22 |
| 10 | 432 | 454 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 15.55 | 6.96 | 24.15 |
| CcL | In ants, during behavior modification | 213.88 | 100.53 | 327.23 |
| CcD | In ants, recently dead | 162.21 | 82.30 | 242.12 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.293496 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|808 MADNKVWVIPLELSNYNVIVALLGGFISLFGLVSFLLKENFYLSEALISLLAGLAFGPLGANFIRPRAYSECNQS GVSDIECEDNLNSITLNFSRLVLAVQLVLAGVQLPSKYLWKELKPVLLLIGPGMICMWLATSLLVWGLAGTPSFL QALAVGACVTPTDPVLSAVIVKGKFADENIPKDLQNLIIAESGVNDGLGYPFLFLALYLIKYIGSGSSSGGVREA IGLWFAITWAYTILLSIVFGAVVGWIAKELLHWAEERNYVDRESFLIFSIALALFVLGTCGLIGTDDLLACFIAG NTFTWDDWFRVQTQDDSLQPTIDMLLNVSIFLWYGASLPWGLFGHNAVISTGRLVALGFLVLLLRRLPWVFCMHR WIGQIEDVTQAIFVGFFGPIGVSAVFYLLICLNFIEDHLSDENGQARNDVTNFGETIRVIVWFLVVCSTVVHGLS IPLGKMGYLAPRKIGRVVSRSLSDEPRMVQARVKMPVIDVQSSRAIHLASDEQRQAESSADGSGTATPARQEREI QFSDEIDAGHND |
| Coding | >Ophio5|808 ATGGCGGATAACAAGGTTTGGGTAATTCCACTGGAGTTGTCCAACTACAACGTCATCGTGGCCCTGCTGGGCGGC TTCATCTCGCTCTTTGGCTTGGTTTCCTTTCTGTTGAAGGAGAACTTCTATCTCTCGGAAGCTCTCATCTCTCTC TTGGCGGGCCTCGCCTTTGGTCCGCTGGGCGCAAACTTCATTCGACCCAGGGCCTATTCCGAGTGCAACCAGAGC GGTGTGTCGGATATCGAGTGCGAGGATAACCTAAATAGCATCACCCTCAACTTCTCTCGCCTCGTCCTCGCCGTT CAGCTCGTCCTCGCGGGGGTCCAACTTCCTAGCAAATACCTATGGAAAGAACTGAAGCCTGTCTTGTTACTCATC GGGCCTGGCATGATATGCATGTGGCTCGCCACCAGTCTTCTCGTCTGGGGCCTCGCGGGCACGCCTAGCTTCCTG CAAGCCCTGGCCGTCGGGGCGTGTGTCACGCCTACGGATCCTGTCCTATCGGCCGTGATTGTCAAGGGCAAATTT GCCGACGAGAATATACCCAAGGACCTCCAAAACCTTATCATAGCGGAATCGGGTGTCAACGATGGGCTCGGCTAC CCGTTCTTGTTCCTCGCCCTCTACCTCATCAAGTATATCGGCTCCGGATCCTCGTCCGGTGGCGTGAGGGAGGCC ATCGGTCTCTGGTTCGCGATAACCTGGGCGTATACAATACTGCTCAGCATCGTATTCGGCGCTGTGGTGGGATGG ATAGCCAAGGAGCTGCTTCACTGGGCCGAGGAGCGCAACTACGTCGATCGCGAAAGCTTTCTCATCTTCTCTATT GCGCTCGCCCTGTTTGTACTAGGGACCTGTGGCCTGATTGGAACCGATGATCTTCTCGCCTGCTTCATCGCCGGT AATACGTTTACGTGGGACGATTGGTTCCGCGTGCAGACCCAAGACGACTCTCTCCAGCCGACGATCGATATGCTA CTCAACGTATCCATCTTCCTCTGGTACGGCGCGTCCCTCCCCTGGGGCCTCTTTGGTCACAACGCCGTCATCTCT ACCGGGCGACTCGTCGCTCTCGGCTTCCTCGTGCTGCTTCTCAGGCGATTGCCGTGGGTCTTTTGTATGCATAGG TGGATCGGCCAGATCGAAGACGTCACGCAAGCCATTTTCGTCGGTTTCTTCGGACCCATTGGTGTCTCGGCCGTC TTTTATCTACTAATCTGCCTGAATTTCATCGAGGATCATCTGAGCGACGAGAATGGACAGGCAAGAAACGACGTG ACGAATTTTGGCGAAACTATTCGTGTCATCGTCTGGTTTCTCGTTGTTTGTAGCACTGTTGTTCATGGACTCAGC ATTCCGCTCGGCAAGATGGGATACCTGGCACCGAGAAAGATTGGGCGTGTTGTGAGTCGGAGTTTGAGTGATGAG CCACGCATGGTGCAGGCTCGAGTCAAGATGCCCGTCATAGATGTTCAGAGCTCACGTGCGATTCATTTGGCCTCG GATGAGCAGAGACAAGCTGAGAGCTCTGCGGATGGGTCGGGGACTGCAACCCCCGCTCGGCAGGAAAGGGAGATT CAATTTTCTGACGAGATAGACGCAGGACACAATGAC |
| Transcript | >Ophio5|808 ATGGCGGATAACAAGGTTTGGGTAATTCCACTGGAGTTGTCCAACTACAACGTCATCGTGGCCCTGCTGGGCGGC TTCATCTCGCTCTTTGGCTTGGTTTCCTTTCTGTTGAAGGAGAACTTCTATCTCTCGGAAGCTCTCATCTCTCTC TTGGCGGGCCTCGCCTTTGGTCCGCTGGGCGCAAACTTCATTCGACCCAGGGCCTATTCCGAGTGCAACCAGAGC GGTGTGTCGGATATCGAGTGCGAGGATAACCTAAATAGCATCACCCTCAACTTCTCTCGCCTCGTCCTCGCCGTT CAGCTCGTCCTCGCGGGGGTCCAACTTCCTAGCAAATACCTATGGAAAGAACTGAAGCCTGTCTTGTTACTCATC GGGCCTGGCATGATATGCATGTGGCTCGCCACCAGTCTTCTCGTCTGGGGCCTCGCGGGCACGCCTAGCTTCCTG CAAGCCCTGGCCGTCGGGGCGTGTGTCACGCCTACGGATCCTGTCCTATCGGCCGTGATTGTCAAGGGCAAATTT GCCGACGAGAATATACCCAAGGACCTCCAAAACCTTATCATAGCGGAATCGGGTGTCAACGATGGGCTCGGCTAC CCGTTCTTGTTCCTCGCCCTCTACCTCATCAAGTATATCGGCTCCGGATCCTCGTCCGGTGGCGTGAGGGAGGCC ATCGGTCTCTGGTTCGCGATAACCTGGGCGTATACAATACTGCTCAGCATCGTATTCGGCGCTGTGGTGGGATGG ATAGCCAAGGAGCTGCTTCACTGGGCCGAGGAGCGCAACTACGTCGATCGCGAAAGCTTTCTCATCTTCTCTATT GCGCTCGCCCTGTTTGTACTAGGGACCTGTGGCCTGATTGGAACCGATGATCTTCTCGCCTGCTTCATCGCCGGT AATACGTTTACGTGGGACGATTGGTTCCGCGTGCAGACCCAAGACGACTCTCTCCAGCCGACGATCGATATGCTA CTCAACGTATCCATCTTCCTCTGGTACGGCGCGTCCCTCCCCTGGGGCCTCTTTGGTCACAACGCCGTCATCTCT ACCGGGCGACTCGTCGCTCTCGGCTTCCTCGTGCTGCTTCTCAGGCGATTGCCGTGGGTCTTTTGTATGCATAGG TGGATCGGCCAGATCGAAGACGTCACGCAAGCCATTTTCGTCGGTTTCTTCGGACCCATTGGTGTCTCGGCCGTC TTTTATCTACTAATCTGCCTGAATTTCATCGAGGATCATCTGAGCGACGAGAATGGACAGGCAAGAAACGACGTG ACGAATTTTGGCGAAACTATTCGTGTCATCGTCTGGTTTCTCGTTGTTTGTAGCACTGTTGTTCATGGACTCAGC ATTCCGCTCGGCAAGATGGGATACCTGGCACCGAGAAAGATTGGGCGTGTTGTGAGTCGGAGTTTGAGTGATGAG CCACGCATGGTGCAGGCTCGAGTCAAGATGCCCGTCATAGATGTTCAGAGCTCACGTGCGATTCATTTGGCCTCG GATGAGCAGAGACAAGCTGAGAGCTCTGCGGATGGGTCGGGGACTGCAACCCCCGCTCGGCAGGAAAGGGAGATT CAATTTTCTGACGAGATAGACGCAGGACACAATGACTGA |
| Gene | >Ophio5|808 ATGGCGGATAACAAGGTTTGGGTAATTCCACTGGAGTTGTCCAACTACAACGTCATCGTGGCCCTGCTGGGCGGC TTCATCTCGCTCTTTGGCTTGGTTTCCTTTCTGTTGAAGGAGAACTTCTATCTCTCGGAAGCTCGTAAGTCCCCT TGCATGGATCCCGATGTAACGTAGCGCCACATGCATTCCTAGTGCTAAGCTTCTCATAGTCATCTCTCTCTTGGC GGGCCTCGCCTTTGGTCCGCTGGGCGCAAACTTCATTCGACCCAGGGCCTATTCCGAGTGCAACCAGAGCGGTGT GTCGGATATCGAGTGCGAGGATAACCTAAATAGCATCACCCTCAACTTCTCTCGCCTCGTCCTCGCCGTTCAGCT CGTCCTCGCGGGGGTCCAACTTCCTAGCAAATACCTATGGAAAGAACTGAAGCCTGTCTTGTTACTCATCGGGCC TGGCATGATATGCATGTGGCTCGCCACCAGTCTTCTCGTCTGGGGCCTCGCGGGCACGCCTAGCTTCCTGCAAGC CCTGGCCGTCGGGGCGTGTGTCACGCCTACGGATCCTGTCCTATCGGCCGTGATTGTCAAGGGCAAATTTGCCGA CGAGAATATACCCAAGGACCTCCAAAACCTTATCATAGCGGAATCGGGTGTCAACGATGGGCTCGGCTACCCGTT CTTGTTCCTCGCCCTCTACCTCATCAAGTATATCGGCTCCGGATCCTCGTCCGGTGGCGTGAGGGAGGCCATCGG TCTCTGGTTCGCGATAACCTGGGCGTATACAATACTGCTCAGCATCGTATTCGGCGCTGTGGTGGGATGGATAGC CAAGGAGCTGCTTCACTGGGCCGAGGAGCGCAACTACGTCGATCGCGAAAGCTTTCTCATCTTCTCTATTGCGCT CGCCCTGTTTGTACTAGGGACCTGTGGCCTGATTGGAACCGATGATCTTCTCGCCTGCTTCATCGCCGGTAATAC GTTTACGTGGGACGATTGGTTCCGCGTGCAGACCCAAGACGACTCTCTCCAGCCGACGATCGATATGCTACTCAA CGTATCCATCTTCCTCTGGTACGGCGCGTCCCTCCCCTGGGGCCTCTTTGGTCACAACGCCGTCATCTCTACCGG GCGACTCGTCGCTCTCGGCTTCCTCGTGCTGCTTCTCAGGCGATTGCCGTGGGTCTTTTGTATGCATAGGTGGAT CGGCCAGATCGAAGACGTCACGCAAGCCATTTTCGTCGGTTTCTTCGGACCCATTGGTGTCTCGGCCGTCTTTTA TCTACTAATCTGCCTGAATTTCATCGAGGATCATCTGAGCGACGAGAATGGACAGGCAAGAAACGACGTGACGAA TTTTGGCGAAACTATTCGTGTCATCGTCTGGTTTCTCGTTGTTTGTAGCACTGTGAGTGTTTACATGCCGCAACA TGTCTCCTCGTCCCGCCCTCCTTCCGTCTAACCCTTGGCTCCATCAGGTTGTTCATGGACTCAGCATTCCGCTCG GCAAGATGGGATACCTGGCACCGAGAAAGATTGGGCGTGTTGTGAGTCGGAGTTTGAGTGATGAGCCACGCATGG TGCAGGCTCGAGTCAAGATGCCCGTCATAGGCAGGTATTTCTCCGCCAGGAACACGAGTGGCAGCGTCGTGACCA GCCCCGCCAGGAGGAGCTCTATAGATGTTCAGAGCTCACGTGCGATTCATTTGGCCTCGGATGAGCAGAGACAAG CTGAGAGCTCTGCGGATGGGTCGGGGACTGCAACCCCCGCTCGGCAGGAAAGGGAGATTCAATTTTCTGACGAGA TAGACGCAGGACACAATGACTGA |