© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|8064 |
| Gene name | |
| Location | scaffold_85:42748..43408 |
| Strand | + |
| Gene length (bp) | 660 |
| Transcript length (bp) | 660 |
| Coding sequence length (bp) | 657 |
| Protein length (aa) | 219 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07947 | YhhN | YhhN family | 1.1E-33 | 36 | 217 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|B0BNF0|TM86B_RAT | Lysoplasmalogenase OS=Rattus norvegicus GN=Tmem86b PE=1 SV=1 | 51 | 214 | 5.0E-08 |
| sp|P64838|Y1436_MYCBO | Uncharacterized membrane protein Mb1436 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1436 PE=3 SV=2 | 60 | 218 | 3.0E-06 |
| sp|P9WG51|Y1401_MYCTU | Uncharacterized membrane protein Rv1401 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv1401 PE=1 SV=2 | 60 | 218 | 3.0E-06 |
| sp|P9WG50|Y1401_MYCTO | Uncharacterized membrane protein MT1445 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT1445 PE=3 SV=2 | 60 | 218 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 45 | 67 | 22 |
| 3 | 82 | 101 | 19 |
| 4 | 114 | 136 | 22 |
| 5 | 141 | 163 | 22 |
| 6 | 201 | 218 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|8064 MEPASRPMLETTLLLSSLTSALIYGLLARAAPSRSRMAYKTASTALLSCLAAAQGSSWPLVAALALGSVGDTFLA WPGDEAFVRGLMSFLAAHILYCGLFFRSGDGLAAPRNEGWRNLVAAVAAASALAMSFALMHRVGSALRLPVVAYC TAILCMVLGAVTVPGRRVVTGAVLFASSDSLLAADEFLVDGKSRHRAWMQYAVWLLYYSGQLLIVSGFR |
| Coding | >Ophio5|8064 ATGGAACCCGCGAGTCGACCAATGCTGGAGACGACTCTTCTGCTGAGCTCGCTCACCTCGGCCCTCATTTACGGC CTGTTGGCTCGCGCAGCACCTAGCCGCTCACGTATGGCTTACAAGACGGCCTCGACGGCGCTGCTGTCCTGTCTC GCCGCTGCGCAGGGCTCATCGTGGCCTCTCGTCGCCGCCTTGGCCCTTGGTTCCGTTGGGGATACCTTTCTCGCC TGGCCTGGAGACGAAGCATTCGTGCGCGGGCTCATGAGCTTTCTCGCCGCTCACATCCTCTACTGCGGCTTATTC TTTCGCTCGGGCGATGGCCTGGCTGCTCCTCGCAACGAGGGTTGGCGAAATCTAGTGGCAGCGGTTGCGGCGGCC TCGGCGCTGGCTATGAGCTTCGCATTGATGCACAGGGTTGGCTCGGCGCTGCGCCTCCCTGTCGTCGCTTACTGC ACTGCCATTCTTTGCATGGTTCTCGGGGCCGTGACTGTGCCCGGCAGGCGGGTAGTTACTGGTGCTGTCCTATTC GCTTCGTCGGATTCATTACTCGCGGCGGATGAGTTTCTGGTAGACGGCAAATCGCGACATCGTGCCTGGATGCAG TATGCGGTCTGGCTGCTTTACTACAGTGGTCAACTGCTCATCGTGAGTGGGTTTCGT |
| Transcript | >Ophio5|8064 ATGGAACCCGCGAGTCGACCAATGCTGGAGACGACTCTTCTGCTGAGCTCGCTCACCTCGGCCCTCATTTACGGC CTGTTGGCTCGCGCAGCACCTAGCCGCTCACGTATGGCTTACAAGACGGCCTCGACGGCGCTGCTGTCCTGTCTC GCCGCTGCGCAGGGCTCATCGTGGCCTCTCGTCGCCGCCTTGGCCCTTGGTTCCGTTGGGGATACCTTTCTCGCC TGGCCTGGAGACGAAGCATTCGTGCGCGGGCTCATGAGCTTTCTCGCCGCTCACATCCTCTACTGCGGCTTATTC TTTCGCTCGGGCGATGGCCTGGCTGCTCCTCGCAACGAGGGTTGGCGAAATCTAGTGGCAGCGGTTGCGGCGGCC TCGGCGCTGGCTATGAGCTTCGCATTGATGCACAGGGTTGGCTCGGCGCTGCGCCTCCCTGTCGTCGCTTACTGC ACTGCCATTCTTTGCATGGTTCTCGGGGCCGTGACTGTGCCCGGCAGGCGGGTAGTTACTGGTGCTGTCCTATTC GCTTCGTCGGATTCATTACTCGCGGCGGATGAGTTTCTGGTAGACGGCAAATCGCGACATCGTGCCTGGATGCAG TATGCGGTCTGGCTGCTTTACTACAGTGGTCAACTGCTCATCGTGAGTGGGTTTCGTTGA |
| Gene | >Ophio5|8064 ATGGAACCCGCGAGTCGACCAATGCTGGAGACGACTCTTCTGCTGAGCTCGCTCACCTCGGCCCTCATTTACGGC CTGTTGGCTCGCGCAGCACCTAGCCGCTCACGTATGGCTTACAAGACGGCCTCGACGGCGCTGCTGTCCTGTCTC GCCGCTGCGCAGGGCTCATCGTGGCCTCTCGTCGCCGCCTTGGCCCTTGGTTCCGTTGGGGATACCTTTCTCGCC TGGCCTGGAGACGAAGCATTCGTGCGCGGGCTCATGAGCTTTCTCGCCGCTCACATCCTCTACTGCGGCTTATTC TTTCGCTCGGGCGATGGCCTGGCTGCTCCTCGCAACGAGGGTTGGCGAAATCTAGTGGCAGCGGTTGCGGCGGCC TCGGCGCTGGCTATGAGCTTCGCATTGATGCACAGGGTTGGCTCGGCGCTGCGCCTCCCTGTCGTCGCTTACTGC ACTGCCATTCTTTGCATGGTTCTCGGGGCCGTGACTGTGCCCGGCAGGCGGGTAGTTACTGGTGCTGTCCTATTC GCTTCGTCGGATTCATTACTCGCGGCGGATGAGTTTCTGGTAGACGGCAAATCGCGACATCGTGCCTGGATGCAG TATGCGGTCTGGCTGCTTTACTACAGTGGTCAACTGCTCATCGTGAGTGGGTTTCGTTGA |