Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8046
Gene name
Locationscaffold_85:5481..7113
Strand-
Gene length (bp)1632
Transcript length (bp)1632
Coding sequence length (bp)1629
Protein length (aa) 543

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07766 LETM1_RBD LETM1-like, RBD 5.5E-87 189 418

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O13920|MDM28_SCHPO LETM1 domain-containing protein mdm28, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdm28 PE=2 SV=3 147 470 4.0E-123
sp|Q06493|YLH47_YEAST LETM1 domain-containing protein YLH47, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLH47 PE=1 SV=1 120 470 1.0E-98
sp|Q5ZK33|LETM1_CHICK LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1 148 492 4.0E-84
sp|Q08179|MDM38_YEAST Mitochondrial distribution and morphology protein 38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDM38 PE=1 SV=1 148 527 1.0E-83
sp|Q0VCA3|LETM1_BOVIN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Bos taurus GN=LETM1 PE=2 SV=1 151 484 2.0E-80
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Swissprot ID Swissprot Description Start End E-value
sp|O13920|MDM28_SCHPO LETM1 domain-containing protein mdm28, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdm28 PE=2 SV=3 147 470 4.0E-123
sp|Q06493|YLH47_YEAST LETM1 domain-containing protein YLH47, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLH47 PE=1 SV=1 120 470 1.0E-98
sp|Q5ZK33|LETM1_CHICK LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1 148 492 4.0E-84
sp|Q08179|MDM38_YEAST Mitochondrial distribution and morphology protein 38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDM38 PE=1 SV=1 148 527 1.0E-83
sp|Q0VCA3|LETM1_BOVIN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Bos taurus GN=LETM1 PE=2 SV=1 151 484 2.0E-80
sp|Q1LY46|LETM1_DANRE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Danio rerio GN=letm1 PE=3 SV=2 142 527 2.0E-79
sp|Q0VA06|LETM1_XENTR LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Xenopus tropicalis GN=letm1 PE=2 SV=1 145 484 7.0E-77
sp|O95202|LETM1_HUMAN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Homo sapiens GN=LETM1 PE=1 SV=1 148 525 3.0E-71
sp|Q9Z2I0|LETM1_MOUSE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Mus musculus GN=Letm1 PE=1 SV=1 150 480 5.0E-71
sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Letm1 PE=1 SV=1 148 480 8.0E-71
sp|P91927|A60DA_DROME LETM1 and EF-hand domain-containing protein anon-60Da, mitochondrial OS=Drosophila melanogaster GN=Letm1 PE=2 SV=2 158 462 4.0E-70
sp|Q28DA8|LETM2_XENTR LETM1 domain-containing protein LETM2, mitochondrial OS=Xenopus tropicalis GN=letm2 PE=2 SV=1 141 408 1.0E-54
sp|Q7TNU7|LETM2_MOUSE LETM1 domain-containing protein LETM2, mitochondrial OS=Mus musculus GN=Letm2 PE=1 SV=1 141 418 1.0E-54
sp|Q5PQQ5|LETM2_RAT LETM1 domain-containing protein LETM2, mitochondrial OS=Rattus norvegicus GN=Letm2 PE=2 SV=1 148 418 1.0E-53
sp|Q2VYF4|LETM2_HUMAN LETM1 domain-containing protein LETM2, mitochondrial OS=Homo sapiens GN=LETM2 PE=2 SV=2 153 418 4.0E-53
sp|A3KN46|LTMD1_BOVIN LETM1 domain-containing protein 1 OS=Bos taurus GN=LETMD1 PE=2 SV=1 177 401 8.0E-13
sp|Q6P1Q0|LTMD1_HUMAN LETM1 domain-containing protein 1 OS=Homo sapiens GN=LETMD1 PE=1 SV=1 177 401 3.0E-09
sp|Q924L1|LTMD1_MOUSE LETM1 domain-containing protein 1 OS=Mus musculus GN=Letmd1 PE=1 SV=1 177 419 8.0E-08
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 60 0.45

Transmembrane Domains

Domain # Start End Length
1 204 226 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8046
MSASSAVARRAAARNPLLVGNAVGALPRAFAPGWLARRGGDNGRVSVLALLLPVARSMATEHHRPDPQTSTPPPG
FNVEQAKKPLARDDKAANGKTATKQPQSQQEQPSPQQQAGATKTQSAVTELAADKGDTAAKQELVKADQEDKKLT
LWQKVKREAHHYWDGTKLLAVEMRISWKLALKMAAGYDLSRRENKQLQRTVRDLGRLVPFSVFIIVPLGEALLPL
ALKLFPNMLPSTFEGQKSKDAKASLLRSTRNEVSAFLKQTLKETGLPLSAATAHKEEFANFFRKVRSTGETPTRE
DVIRVCKVFRDDVTLDNLSRPQLVSMCRYMNLNTFGTDMMLRYQVRHRMRQIKRDDKAISFEGVDSLTVSELQTA
CAARGIRTHSVSPARMRTDLQTWLDLRLIEGVPSTLLVLSNAYMYGQGSDSEWNQVDALIGVLSSIPEELFHEME
LEVHNAEGAATNKQRLEVLKEQQDLIEDENEQNEESQSTGMATPRDVDDIDEKEERQLSAQAAGLEKTPAAEMVD
AERETAVQEGARNKDKSE
Coding >Ophio5|8046
ATGAGTGCCTCGTCTGCGGTTGCCCGCAGGGCGGCGGCTCGCAACCCGCTACTGGTTGGAAATGCTGTCGGCGCC
CTCCCTCGAGCCTTTGCGCCCGGCTGGCTGGCCCGCCGCGGCGGCGACAATGGCCGTGTCTCTGTGCTGGCACTT
CTTCTGCCAGTCGCGCGCTCCATGGCTACCGAACATCACCGGCCGGATCCCCAGACGTCGACGCCTCCGCCGGGC
TTCAACGTCGAGCAGGCTAAGAAGCCCCTTGCTCGGGACGACAAGGCAGCCAATGGCAAAACTGCGACCAAGCAG
CCGCAATCGCAGCAAGAGCAGCCTTCTCCGCAACAACAAGCCGGCGCGACAAAGACACAATCCGCCGTTACGGAG
CTGGCCGCCGATAAGGGTGACACGGCAGCAAAGCAAGAGCTAGTCAAGGCCGACCAGGAAGACAAGAAACTCACG
CTGTGGCAAAAGGTCAAGAGGGAGGCGCACCACTACTGGGATGGCACCAAGCTGCTCGCCGTAGAGATGCGTATC
AGCTGGAAGCTGGCCCTCAAAATGGCGGCCGGGTACGACTTGTCGCGCCGGGAAAACAAGCAGCTGCAGCGGACG
GTGCGGGACCTGGGACGGCTCGTCCCCTTTTCCGTCTTCATCATCGTCCCTCTCGGCGAGGCCCTTCTCCCCCTG
GCGCTCAAGCTCTTCCCCAACATGCTACCCAGCACCTTCGAAGGCCAAAAGTCAAAGGACGCCAAAGCCAGCCTG
TTGCGGTCGACACGCAACGAGGTCAGCGCGTTCTTAAAGCAGACGCTCAAGGAGACGGGCCTTCCGCTGAGCGCG
GCGACGGCGCACAAGGAGGAGTTTGCCAACTTCTTCCGTAAGGTGCGCTCGACGGGCGAGACGCCGACGCGGGAA
GACGTGATACGGGTCTGCAAGGTGTTCCGCGACGATGTGACGCTTGACAACCTCTCGCGACCGCAGCTCGTGTCT
ATGTGCCGGTACATGAACCTCAACACGTTCGGCACCGACATGATGCTGCGGTACCAGGTGCGGCACCGGATGCGG
CAGATTAAGCGCGACGACAAGGCCATCAGCTTCGAGGGCGTCGACAGCCTGACCGTGTCGGAGCTACAGACGGCG
TGCGCGGCACGCGGGATCCGCACACACAGCGTGTCTCCAGCCCGCATGCGTACCGACTTGCAGACGTGGCTGGAC
CTGCGACTGATCGAGGGCGTGCCGTCTACGTTACTGGTGCTCAGCAATGCCTACATGTACGGCCAGGGCTCCGAC
TCGGAGTGGAACCAGGTCGACGCCCTCATCGGCGTGCTCTCGTCCATCCCCGAGGAGCTCTTCCACGAGATGGAG
CTCGAGGTGCACAACGCCGAGGGTGCTGCCACCAACAAGCAGCGGCTTGAGGTGCTCAAGGAGCAGCAGGACCTG
ATTGAAGACGAGAACGAGCAGAACGAGGAGAGCCAGAGCACCGGCATGGCAACGCCCCGCGACGTCGACGACATT
GACGAGAAGGAGGAGCGCCAGCTATCCGCCCAAGCGGCGGGGCTGGAGAAGACGCCGGCGGCCGAGATGGTCGAC
GCCGAGCGGGAGACGGCCGTTCAGGAGGGGGCCCGCAACAAAGACAAGTCAGAG
Transcript >Ophio5|8046
ATGAGTGCCTCGTCTGCGGTTGCCCGCAGGGCGGCGGCTCGCAACCCGCTACTGGTTGGAAATGCTGTCGGCGCC
CTCCCTCGAGCCTTTGCGCCCGGCTGGCTGGCCCGCCGCGGCGGCGACAATGGCCGTGTCTCTGTGCTGGCACTT
CTTCTGCCAGTCGCGCGCTCCATGGCTACCGAACATCACCGGCCGGATCCCCAGACGTCGACGCCTCCGCCGGGC
TTCAACGTCGAGCAGGCTAAGAAGCCCCTTGCTCGGGACGACAAGGCAGCCAATGGCAAAACTGCGACCAAGCAG
CCGCAATCGCAGCAAGAGCAGCCTTCTCCGCAACAACAAGCCGGCGCGACAAAGACACAATCCGCCGTTACGGAG
CTGGCCGCCGATAAGGGTGACACGGCAGCAAAGCAAGAGCTAGTCAAGGCCGACCAGGAAGACAAGAAACTCACG
CTGTGGCAAAAGGTCAAGAGGGAGGCGCACCACTACTGGGATGGCACCAAGCTGCTCGCCGTAGAGATGCGTATC
AGCTGGAAGCTGGCCCTCAAAATGGCGGCCGGGTACGACTTGTCGCGCCGGGAAAACAAGCAGCTGCAGCGGACG
GTGCGGGACCTGGGACGGCTCGTCCCCTTTTCCGTCTTCATCATCGTCCCTCTCGGCGAGGCCCTTCTCCCCCTG
GCGCTCAAGCTCTTCCCCAACATGCTACCCAGCACCTTCGAAGGCCAAAAGTCAAAGGACGCCAAAGCCAGCCTG
TTGCGGTCGACACGCAACGAGGTCAGCGCGTTCTTAAAGCAGACGCTCAAGGAGACGGGCCTTCCGCTGAGCGCG
GCGACGGCGCACAAGGAGGAGTTTGCCAACTTCTTCCGTAAGGTGCGCTCGACGGGCGAGACGCCGACGCGGGAA
GACGTGATACGGGTCTGCAAGGTGTTCCGCGACGATGTGACGCTTGACAACCTCTCGCGACCGCAGCTCGTGTCT
ATGTGCCGGTACATGAACCTCAACACGTTCGGCACCGACATGATGCTGCGGTACCAGGTGCGGCACCGGATGCGG
CAGATTAAGCGCGACGACAAGGCCATCAGCTTCGAGGGCGTCGACAGCCTGACCGTGTCGGAGCTACAGACGGCG
TGCGCGGCACGCGGGATCCGCACACACAGCGTGTCTCCAGCCCGCATGCGTACCGACTTGCAGACGTGGCTGGAC
CTGCGACTGATCGAGGGCGTGCCGTCTACGTTACTGGTGCTCAGCAATGCCTACATGTACGGCCAGGGCTCCGAC
TCGGAGTGGAACCAGGTCGACGCCCTCATCGGCGTGCTCTCGTCCATCCCCGAGGAGCTCTTCCACGAGATGGAG
CTCGAGGTGCACAACGCCGAGGGTGCTGCCACCAACAAGCAGCGGCTTGAGGTGCTCAAGGAGCAGCAGGACCTG
ATTGAAGACGAGAACGAGCAGAACGAGGAGAGCCAGAGCACCGGCATGGCAACGCCCCGCGACGTCGACGACATT
GACGAGAAGGAGGAGCGCCAGCTATCCGCCCAAGCGGCGGGGCTGGAGAAGACGCCGGCGGCCGAGATGGTCGAC
GCCGAGCGGGAGACGGCCGTTCAGGAGGGGGCCCGCAACAAAGACAAGTCAGAGTGA
Gene >Ophio5|8046
ATGAGTGCCTCGTCTGCGGTTGCCCGCAGGGCGGCGGCTCGCAACCCGCTACTGGTTGGAAATGCTGTCGGCGCC
CTCCCTCGAGCCTTTGCGCCCGGCTGGCTGGCCCGCCGCGGCGGCGACAATGGCCGTGTCTCTGTGCTGGCACTT
CTTCTGCCAGTCGCGCGCTCCATGGCTACCGAACATCACCGGCCGGATCCCCAGACGTCGACGCCTCCGCCGGGC
TTCAACGTCGAGCAGGCTAAGAAGCCCCTTGCTCGGGACGACAAGGCAGCCAATGGCAAAACTGCGACCAAGCAG
CCGCAATCGCAGCAAGAGCAGCCTTCTCCGCAACAACAAGCCGGCGCGACAAAGACACAATCCGCCGTTACGGAG
CTGGCCGCCGATAAGGGTGACACGGCAGCAAAGCAAGAGCTAGTCAAGGCCGACCAGGAAGACAAGAAACTCACG
CTGTGGCAAAAGGTCAAGAGGGAGGCGCACCACTACTGGGATGGCACCAAGCTGCTCGCCGTAGAGATGCGTATC
AGCTGGAAGCTGGCCCTCAAAATGGCGGCCGGGTACGACTTGTCGCGCCGGGAAAACAAGCAGCTGCAGCGGACG
GTGCGGGACCTGGGACGGCTCGTCCCCTTTTCCGTCTTCATCATCGTCCCTCTCGGCGAGGCCCTTCTCCCCCTG
GCGCTCAAGCTCTTCCCCAACATGCTACCCAGCACCTTCGAAGGCCAAAAGTCAAAGGACGCCAAAGCCAGCCTG
TTGCGGTCGACACGCAACGAGGTCAGCGCGTTCTTAAAGCAGACGCTCAAGGAGACGGGCCTTCCGCTGAGCGCG
GCGACGGCGCACAAGGAGGAGTTTGCCAACTTCTTCCGTAAGGTGCGCTCGACGGGCGAGACGCCGACGCGGGAA
GACGTGATACGGGTCTGCAAGGTGTTCCGCGACGATGTGACGCTTGACAACCTCTCGCGACCGCAGCTCGTGTCT
ATGTGCCGGTACATGAACCTCAACACGTTCGGCACCGACATGATGCTGCGGTACCAGGTGCGGCACCGGATGCGG
CAGATTAAGCGCGACGACAAGGCCATCAGCTTCGAGGGCGTCGACAGCCTGACCGTGTCGGAGCTACAGACGGCG
TGCGCGGCACGCGGGATCCGCACACACAGCGTGTCTCCAGCCCGCATGCGTACCGACTTGCAGACGTGGCTGGAC
CTGCGACTGATCGAGGGCGTGCCGTCTACGTTACTGGTGCTCAGCAATGCCTACATGTACGGCCAGGGCTCCGAC
TCGGAGTGGAACCAGGTCGACGCCCTCATCGGCGTGCTCTCGTCCATCCCCGAGGAGCTCTTCCACGAGATGGAG
CTCGAGGTGCACAACGCCGAGGGTGCTGCCACCAACAAGCAGCGGCTTGAGGTGCTCAAGGAGCAGCAGGACCTG
ATTGAAGACGAGAACGAGCAGAACGAGGAGAGCCAGAGCACCGGCATGGCAACGCCCCGCGACGTCGACGACATT
GACGAGAAGGAGGAGCGCCAGCTATCCGCCCAAGCGGCGGGGCTGGAGAAGACGCCGGCGGCCGAGATGGTCGAC
GCCGAGCGGGAGACGGCCGTTCAGGAGGGGGCCCGCAACAAAGACAAGTCAGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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