Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|803
Gene name
Location	scaffold_1221:1441..2195
Strand	-
Gene length (bp)	754
Transcript length (bp)	582
Coding sequence length (bp)	579
Protein length (aa)	193

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF02178	AT_hook	AT hook motif	3.9E-01	15	24
PF02178	AT_hook	AT hook motif	1.6E+00	39	50
PF02178	AT_hook	AT hook motif	4.8E-02	101	111
PF02178	AT_hook	AT hook motif	1.1E-01	122	132

Swissprot hits

(None)

GO

GO Term	Description	Terminal node
GO:0003677	DNA binding	Yes
GO:0003676	nucleic acid binding	No
GO:0097159	organic cyclic compound binding	No
GO:0005488	binding	No
GO:0003674	molecular_function	No
GO:1901363	heterocyclic compound binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 69	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|803 MARTKEEATGESTAPRGRGRPPGTTTTTTSDAGVKKPTGRGRGRPKSDKSKADSKAKPYVPTGRPRGRPKGSGKK KTGTATATTATATAATATTSSATKGTGKRGRPRKSDAAAADTPKPAKGKRGRPPKKSLEAQPEPKADDDDDDDVD VDVDVDADAEPLSDHAEDSIDDAPINQEHLAVESGEESDDMLD
Coding	>Ophio5\|803 ATGGCGCGCACCAAGGAAGAGGCAACTGGCGAGTCGACGGCCCCCCGCGGTCGAGGCAGACCTCCCGGCACCACG ACGACGACGACGAGCGACGCGGGAGTCAAGAAGCCGACGGGCCGTGGACGAGGTCGTCCTAAAAGTGATAAGTCC AAGGCTGACAGTAAGGCCAAGCCTTATGTCCCCACTGGTCGTCCTCGTGGTCGTCCCAAGGGTAGTGGCAAGAAG AAGACGGGTACGGCTACGGCTACCACTGCTACCGCTACGGCTGCTACGGCTACCACCTCGTCTGCTACCAAGGGC ACCGGCAAAAGAGGAAGACCTCGCAAGTCGGACGCTGCCGCTGCCGATACCCCCAAGCCGGCAAAGGGAAAGAGG GGCCGTCCCCCCAAGAAGTCGCTCGAGGCCCAGCCCGAGCCCAAGGCGGATGATGACGACGACGACGACGTCGAC GTCGACGTCGACGTCGACGCCGATGCCGAGCCGCTGTCGGATCACGCTGAAGATTCCATCGACGATGCCCCCATC AATCAGGAACATCTTGCCGTCGAGTCAGGAGAGGAGTCTGATGATATGCTCGAT
Transcript	>Ophio5\|803 ATGGCGCGCACCAAGGAAGAGGCAACTGGCGAGTCGACGGCCCCCCGCGGTCGAGGCAGACCTCCCGGCACCACG ACGACGACGACGAGCGACGCGGGAGTCAAGAAGCCGACGGGCCGTGGACGAGGTCGTCCTAAAAGTGATAAGTCC AAGGCTGACAGTAAGGCCAAGCCTTATGTCCCCACTGGTCGTCCTCGTGGTCGTCCCAAGGGTAGTGGCAAGAAG AAGACGGGTACGGCTACGGCTACCACTGCTACCGCTACGGCTGCTACGGCTACCACCTCGTCTGCTACCAAGGGC ACCGGCAAAAGAGGAAGACCTCGCAAGTCGGACGCTGCCGCTGCCGATACCCCCAAGCCGGCAAAGGGAAAGAGG GGCCGTCCCCCCAAGAAGTCGCTCGAGGCCCAGCCCGAGCCCAAGGCGGATGATGACGACGACGACGACGTCGAC GTCGACGTCGACGTCGACGCCGATGCCGAGCCGCTGTCGGATCACGCTGAAGATTCCATCGACGATGCCCCCATC AATCAGGAACATCTTGCCGTCGAGTCAGGAGAGGAGTCTGATGATATGCTCGATTGA
Gene	>Ophio5\|803 ATGGCGCGCACCAAGGAAGAGGCAACTGGCGAGTCGACGGCCCCCCGCGGTCGAGGCAGACCTCCCGGCACCACG ACGACGACGACGAGCGACGCGGGAGTCAAGAAGCCGACGGGCCGTGGACGAGGTCGTCCTAAAAGTGATAAGTCC AAGGCTGACAGTAAGGCCAAGCCTTATGTCCCCACTGGTCGTCCTCGTGGTCGTCCCAAGGGTAGTGGCAAGAAG AAGACGGGTACGGCTACGGCTACCACTGCTACCGCTACGGCTGCTACGGCTACCACCTCGTCTGCTACCAAGGGC ACCGGCAAAAGAGGAAGACCTCGCAAGTCGGACGCTGCCGCTGCCGATACCCCCAAGCCGGCAAAGGGAAAGAGG GGCCGTCCCCCCAAGAAGTCGCTCGAGGCCCAGCCCGAGCCCAAGGCGGATGATGACGACGACGACGACGTCGAC GTCGACGTCGACGTCGACGCCGATGCCGAGCCGCTGTCGGATCACGCTGAAGGTGAGTTTTGGGCTGCCCCATCG TCGTCGTCTTTTCAAAAACATGCTCTCTTTTAGCTAACCATGGCTCTCAACTTCCCCCCTCCCTCCCTTTCGCAG ATTCCATCGACGATGCCCCCATCAATCAGGAACATCTTGCCGTCGAGTCAGGAGAGGTTGGTTCTTCAAATTTGG TTCGGGTCCTTGACATCGAGATCATGTTTGGCTAATGCTTTTTGGTTTCCTTTAGGAGTCTGATGATATGCTCGA TTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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