Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7997
Gene name
Locationscaffold_836:1598..2570
Strand+
Gene length (bp)972
Transcript length (bp)972
Coding sequence length (bp)969
Protein length (aa) 323

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.5

Transmembrane Domains

Domain # Start End Length
1 15 37 22
2 296 318 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 596.77 261.74 931.81
CcL In ants, during behavior modification 5.02 0.63 9.41
CcD In ants, recently dead 4.20 0.85 7.54

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.714010 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7997
MPTTNRVLIPTDGYLYYLRVCWPVVQSGLAIFAILVILRRCLTSFCWSRRRIVVVGEEEEEEEEKGEEDAGLEAQ
ILEREKEREREKEKKGVTMMGDDIVEEAEEEVEEEEKEDSKQSLKSDDEQPLIGQENYGAGSATVPPPLPPPFLT
RIPPAPPLTPPELSNTIFTVEEAPHRQDSFIHQPNPDYLTSTAPLSSTTITTTPSSSSSSSSSSRPRRRSYTRTL
PIGIPMPRSASSHADLTFSPRSYPPTSPLLPPPPPSPQPERTMRRRDVDVRGEIISVLDHGGAGWTRHTRVYGGG
VCLACAAAGGGFYGATVSPEEMS
Coding >Ophio5|7997
ATGCCGACGACCAATCGAGTATTAATACCGACGGATGGCTACCTTTATTACTTGAGGGTTTGCTGGCCCGTCGTT
CAATCCGGTTTGGCTATTTTCGCTATCCTTGTTATTCTTCGTCGTTGCTTGACGTCGTTTTGTTGGAGTCGCAGG
CGCATTGTTGTTGTTGGTGAAGAAGAAGAAGAAGAAGAAGAAAAAGGAGAAGAAGACGCTGGATTGGAGGCGCAG
ATATTGGAGAGGGAGAAGGAGAGGGAGAGGGAAAAGGAGAAGAAAGGAGTGACGATGATGGGAGATGATATCGTC
GAGGAGGCGGAGGAGGAAGTGGAGGAGGAAGAGAAGGAGGACTCGAAGCAGAGTCTCAAGTCGGATGACGAACAA
CCCCTGATCGGCCAAGAAAACTACGGGGCCGGATCGGCCACGGTCCCTCCTCCGCTTCCTCCGCCTTTCCTTACA
CGGATCCCGCCCGCGCCGCCTCTAACTCCACCGGAACTCAGCAACACCATCTTCACCGTTGAAGAAGCTCCCCAC
CGACAAGACAGCTTCATCCACCAACCCAACCCGGATTATCTCACCAGCACCGCTCCCCTCTCTTCAACCACAATC
ACAACCACTCCGTCATCGTCATCGTCGTCGTCTTCGTCATCCCGTCCGCGTCGCCGTTCCTACACCCGCACCTTA
CCCATCGGCATTCCCATGCCTCGATCCGCCTCTTCCCATGCCGACTTGACCTTTTCGCCTAGGTCGTATCCGCCT
ACCAGCCCTCTACTCCCACCACCACCACCATCACCGCAGCCGGAGAGGACGATGAGGAGGAGAGATGTCGATGTT
AGGGGTGAGATCATCTCCGTTCTCGATCATGGCGGCGCTGGTTGGACTCGTCATACTCGTGTCTACGGTGGGGGG
GTCTGCCTGGCTTGTGCCGCCGCCGGAGGAGGTTTCTATGGCGCGACTGTGTCGCCTGAGGAGATGAGC
Transcript >Ophio5|7997
ATGCCGACGACCAATCGAGTATTAATACCGACGGATGGCTACCTTTATTACTTGAGGGTTTGCTGGCCCGTCGTT
CAATCCGGTTTGGCTATTTTCGCTATCCTTGTTATTCTTCGTCGTTGCTTGACGTCGTTTTGTTGGAGTCGCAGG
CGCATTGTTGTTGTTGGTGAAGAAGAAGAAGAAGAAGAAGAAAAAGGAGAAGAAGACGCTGGATTGGAGGCGCAG
ATATTGGAGAGGGAGAAGGAGAGGGAGAGGGAAAAGGAGAAGAAAGGAGTGACGATGATGGGAGATGATATCGTC
GAGGAGGCGGAGGAGGAAGTGGAGGAGGAAGAGAAGGAGGACTCGAAGCAGAGTCTCAAGTCGGATGACGAACAA
CCCCTGATCGGCCAAGAAAACTACGGGGCCGGATCGGCCACGGTCCCTCCTCCGCTTCCTCCGCCTTTCCTTACA
CGGATCCCGCCCGCGCCGCCTCTAACTCCACCGGAACTCAGCAACACCATCTTCACCGTTGAAGAAGCTCCCCAC
CGACAAGACAGCTTCATCCACCAACCCAACCCGGATTATCTCACCAGCACCGCTCCCCTCTCTTCAACCACAATC
ACAACCACTCCGTCATCGTCATCGTCGTCGTCTTCGTCATCCCGTCCGCGTCGCCGTTCCTACACCCGCACCTTA
CCCATCGGCATTCCCATGCCTCGATCCGCCTCTTCCCATGCCGACTTGACCTTTTCGCCTAGGTCGTATCCGCCT
ACCAGCCCTCTACTCCCACCACCACCACCATCACCGCAGCCGGAGAGGACGATGAGGAGGAGAGATGTCGATGTT
AGGGGTGAGATCATCTCCGTTCTCGATCATGGCGGCGCTGGTTGGACTCGTCATACTCGTGTCTACGGTGGGGGG
GTCTGCCTGGCTTGTGCCGCCGCCGGAGGAGGTTTCTATGGCGCGACTGTGTCGCCTGAGGAGATGAGCTGA
Gene >Ophio5|7997
ATGCCGACGACCAATCGAGTATTAATACCGACGGATGGCTACCTTTATTACTTGAGGGTTTGCTGGCCCGTCGTT
CAATCCGGTTTGGCTATTTTCGCTATCCTTGTTATTCTTCGTCGTTGCTTGACGTCGTTTTGTTGGAGTCGCAGG
CGCATTGTTGTTGTTGGTGAAGAAGAAGAAGAAGAAGAAGAAAAAGGAGAAGAAGACGCTGGATTGGAGGCGCAG
ATATTGGAGAGGGAGAAGGAGAGGGAGAGGGAAAAGGAGAAGAAAGGAGTGACGATGATGGGAGATGATATCGTC
GAGGAGGCGGAGGAGGAAGTGGAGGAGGAAGAGAAGGAGGACTCGAAGCAGAGTCTCAAGTCGGATGACGAACAA
CCCCTGATCGGCCAAGAAAACTACGGGGCCGGATCGGCCACGGTCCCTCCTCCGCTTCCTCCGCCTTTCCTTACA
CGGATCCCGCCCGCGCCGCCTCTAACTCCACCGGAACTCAGCAACACCATCTTCACCGTTGAAGAAGCTCCCCAC
CGACAAGACAGCTTCATCCACCAACCCAACCCGGATTATCTCACCAGCACCGCTCCCCTCTCTTCAACCACAATC
ACAACCACTCCGTCATCGTCATCGTCGTCGTCTTCGTCATCCCGTCCGCGTCGCCGTTCCTACACCCGCACCTTA
CCCATCGGCATTCCCATGCCTCGATCCGCCTCTTCCCATGCCGACTTGACCTTTTCGCCTAGGTCGTATCCGCCT
ACCAGCCCTCTACTCCCACCACCACCACCATCACCGCAGCCGGAGAGGACGATGAGGAGGAGAGATGTCGATGTT
AGGGGTGAGATCATCTCCGTTCTCGATCATGGCGGCGCTGGTTGGACTCGTCATACTCGTGTCTACGGTGGGGGG
GTCTGCCTGGCTTGTGCCGCCGCCGGAGGAGGTTTCTATGGCGCGACTGTGTCGCCTGAGGAGATGAGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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