© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7996 |
| Gene name | |
| Location | scaffold_835:4149..5859 |
| Strand | + |
| Gene length (bp) | 1710 |
| Transcript length (bp) | 1710 |
| Coding sequence length (bp) | 1707 |
| Protein length (aa) | 569 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01694 | Rhomboid | Rhomboid family | 4.6E-21 | 387 | 532 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q58EK4|PARL_DANRE | Presenilins-associated rhomboid-like protein, mitochondrial OS=Danio rerio GN=parl PE=2 SV=1 | 344 | 536 | 4.0E-16 |
| sp|P53259|PCP1_YEAST | Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1 | 354 | 526 | 1.0E-15 |
| sp|Q2KHV4|PARL_BOVIN | Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos taurus GN=PARL PE=2 SV=1 | 339 | 536 | 2.0E-13 |
| sp|Q5R5H4|PARL_PONAB | Presenilins-associated rhomboid-like protein, mitochondrial OS=Pongo abelii GN=PARL PE=2 SV=1 | 339 | 536 | 3.0E-13 |
| sp|Q9H300|PARL_HUMAN | Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo sapiens GN=PARL PE=1 SV=2 | 339 | 536 | 3.0E-13 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q58EK4|PARL_DANRE | Presenilins-associated rhomboid-like protein, mitochondrial OS=Danio rerio GN=parl PE=2 SV=1 | 344 | 536 | 4.0E-16 |
| sp|P53259|PCP1_YEAST | Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1 | 354 | 526 | 1.0E-15 |
| sp|Q2KHV4|PARL_BOVIN | Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos taurus GN=PARL PE=2 SV=1 | 339 | 536 | 2.0E-13 |
| sp|Q5R5H4|PARL_PONAB | Presenilins-associated rhomboid-like protein, mitochondrial OS=Pongo abelii GN=PARL PE=2 SV=1 | 339 | 536 | 3.0E-13 |
| sp|Q9H300|PARL_HUMAN | Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo sapiens GN=PARL PE=1 SV=2 | 339 | 536 | 3.0E-13 |
| sp|Q3B8P0|PARL_RAT | Presenilins-associated rhomboid-like protein, mitochondrial OS=Rattus norvegicus GN=Parl PE=2 SV=1 | 339 | 536 | 4.0E-13 |
| sp|Q5XJY4|PARL_MOUSE | Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus musculus GN=Parl PE=1 SV=1 | 339 | 536 | 1.0E-12 |
| sp|O14364|YOHB_SCHPO | Uncharacterized protein C13E7.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13E7.11 PE=4 SV=1 | 332 | 528 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0004252 | serine-type endopeptidase activity | Yes |
| GO:0016787 | hydrolase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0003824 | catalytic activity | No |
| GO:0005575 | cellular_component | No |
| GO:0008233 | peptidase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0008236 | serine-type peptidase activity | No |
| GO:0017171 | serine hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 309 | 331 | 22 |
| 2 | 351 | 370 | 19 |
| 3 | 390 | 412 | 22 |
| 4 | 425 | 447 | 22 |
| 5 | 451 | 473 | 22 |
| 6 | 486 | 505 | 19 |
| 7 | 515 | 534 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7996 MASLLCPRVSHALLRPAVRSISWATLQASRLPWSGVCQRRDEARRSGTRLQTISRRSFFKLTSPNVITRYEDLPR GYRDSEGLPFGGRDLYLGEIRRIFGPDMDTDEGNQLLRILHGRRVGGTLEDPAFSVHTARFTTRQMADGLAYLRK TVPVDEVLSAGLRAEDELKLMEMQMEKKRQAAEVKAKGVTQPMEKGEVPEATSWTTETEATKEDDDVYKPDARYG RSVLDEIRARNVAKRKAKEKALEEERQAAQSAENPGGSAVTLVSEDSHAVSSQPRRFKSAKLAEYYKKAQSPLKE PPRMSAWQRILPSAMVVLLTVGLLAGVCAVYEEPTAQYRLFREISASQATLATLIAINVLVFACWRIPPLWKSFN KYMIIVVGKPRAISILTSVFSHILPFHLVANLVPLWFIGTRLHDDLNRAEFLALYMACGSLGFLGSLTVFTLRGQ LVVSTLGSSGATLGILSAYLWEIRREGFRMFGLPRDGVHGVVLLGLLTAAQLGGLCRASKYRVDFVSHLVGMAVG VAGMELIIRKRSGGREGVRASPRAPEEEEEEEEEEKRPQGRERT |
| Coding | >Ophio5|7996 ATGGCCAGCCTCTTGTGCCCTCGCGTCTCGCACGCCCTGCTGAGGCCCGCCGTGCGCAGCATCTCATGGGCGACA TTGCAGGCGTCCCGCCTCCCCTGGAGCGGTGTATGCCAGCGTCGAGATGAGGCCCGGAGGTCCGGGACTCGGCTG CAGACGATCAGCCGACGAAGCTTCTTCAAACTGACGTCGCCCAACGTCATCACCAGATACGAAGATTTGCCGCGC GGCTACCGCGACAGCGAAGGCCTCCCGTTCGGCGGCAGAGACCTATATCTGGGCGAAATCAGGAGGATCTTTGGA CCGGACATGGACACGGACGAGGGCAATCAACTGTTACGGATATTGCATGGCCGCAGGGTCGGGGGCACGCTTGAG GACCCGGCCTTTTCTGTTCACACGGCTCGATTTACGACCCGGCAGATGGCCGACGGGCTGGCGTATCTGAGGAAG ACGGTTCCGGTGGACGAAGTGCTGAGTGCCGGGCTCAGGGCCGAGGATGAGCTGAAGCTCATGGAGATGCAGATG GAGAAGAAGCGTCAGGCGGCCGAGGTCAAGGCTAAAGGGGTGACACAGCCGATGGAGAAAGGCGAGGTTCCAGAG GCGACAAGTTGGACGACAGAGACAGAGGCGACGAAAGAAGACGACGACGTTTACAAGCCCGATGCCAGGTACGGA CGAAGCGTCCTGGACGAGATCCGGGCGCGCAACGTTGCGAAACGTAAAGCAAAGGAAAAGGCGCTCGAGGAGGAG CGGCAGGCAGCGCAGTCGGCCGAGAACCCCGGCGGCAGCGCAGTCACGCTCGTGTCGGAGGATTCGCACGCGGTG TCGAGCCAGCCGCGGAGATTCAAGAGTGCCAAGTTGGCCGAGTACTACAAAAAGGCGCAGTCGCCGCTGAAGGAG CCGCCGCGTATGTCGGCGTGGCAGCGAATCCTGCCGTCGGCCATGGTGGTGCTCCTGACGGTCGGCCTATTGGCC GGCGTGTGCGCCGTGTACGAGGAACCGACGGCGCAGTACCGACTATTCCGGGAGATTTCGGCATCGCAGGCGACG CTGGCGACGCTGATTGCCATCAACGTGCTCGTCTTTGCGTGCTGGCGGATCCCGCCGCTGTGGAAGTCGTTCAAC AAGTACATGATTATCGTGGTGGGCAAGCCCCGGGCCATTTCGATCCTGACGAGCGTCTTCTCGCATATCCTACCG TTTCACCTGGTGGCCAACCTGGTGCCGCTGTGGTTCATCGGCACGCGGCTGCACGACGACCTGAACCGGGCCGAG TTCCTGGCGCTGTACATGGCCTGCGGCTCGCTGGGCTTCCTGGGCAGCCTGACGGTCTTTACGCTACGCGGCCAG CTGGTTGTGTCGACGCTGGGATCTTCGGGCGCGACGCTGGGCATCCTGTCGGCGTACCTGTGGGAGATACGGCGG GAGGGCTTCCGCATGTTTGGCCTGCCGAGGGACGGGGTTCACGGCGTGGTGCTACTGGGGCTACTGACGGCAGCC CAGCTGGGAGGATTGTGCAGGGCCAGCAAGTATCGAGTCGATTTCGTCTCCCACCTGGTGGGCATGGCGGTGGGT GTCGCGGGCATGGAGCTGATTATCCGCAAGAGGAGCGGAGGCAGAGAGGGTGTCAGAGCAAGCCCGAGGGCGCCG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAAGGCCGCAAGGTCGGGAACGGACG |
| Transcript | >Ophio5|7996 ATGGCCAGCCTCTTGTGCCCTCGCGTCTCGCACGCCCTGCTGAGGCCCGCCGTGCGCAGCATCTCATGGGCGACA TTGCAGGCGTCCCGCCTCCCCTGGAGCGGTGTATGCCAGCGTCGAGATGAGGCCCGGAGGTCCGGGACTCGGCTG CAGACGATCAGCCGACGAAGCTTCTTCAAACTGACGTCGCCCAACGTCATCACCAGATACGAAGATTTGCCGCGC GGCTACCGCGACAGCGAAGGCCTCCCGTTCGGCGGCAGAGACCTATATCTGGGCGAAATCAGGAGGATCTTTGGA CCGGACATGGACACGGACGAGGGCAATCAACTGTTACGGATATTGCATGGCCGCAGGGTCGGGGGCACGCTTGAG GACCCGGCCTTTTCTGTTCACACGGCTCGATTTACGACCCGGCAGATGGCCGACGGGCTGGCGTATCTGAGGAAG ACGGTTCCGGTGGACGAAGTGCTGAGTGCCGGGCTCAGGGCCGAGGATGAGCTGAAGCTCATGGAGATGCAGATG GAGAAGAAGCGTCAGGCGGCCGAGGTCAAGGCTAAAGGGGTGACACAGCCGATGGAGAAAGGCGAGGTTCCAGAG GCGACAAGTTGGACGACAGAGACAGAGGCGACGAAAGAAGACGACGACGTTTACAAGCCCGATGCCAGGTACGGA CGAAGCGTCCTGGACGAGATCCGGGCGCGCAACGTTGCGAAACGTAAAGCAAAGGAAAAGGCGCTCGAGGAGGAG CGGCAGGCAGCGCAGTCGGCCGAGAACCCCGGCGGCAGCGCAGTCACGCTCGTGTCGGAGGATTCGCACGCGGTG TCGAGCCAGCCGCGGAGATTCAAGAGTGCCAAGTTGGCCGAGTACTACAAAAAGGCGCAGTCGCCGCTGAAGGAG CCGCCGCGTATGTCGGCGTGGCAGCGAATCCTGCCGTCGGCCATGGTGGTGCTCCTGACGGTCGGCCTATTGGCC GGCGTGTGCGCCGTGTACGAGGAACCGACGGCGCAGTACCGACTATTCCGGGAGATTTCGGCATCGCAGGCGACG CTGGCGACGCTGATTGCCATCAACGTGCTCGTCTTTGCGTGCTGGCGGATCCCGCCGCTGTGGAAGTCGTTCAAC AAGTACATGATTATCGTGGTGGGCAAGCCCCGGGCCATTTCGATCCTGACGAGCGTCTTCTCGCATATCCTACCG TTTCACCTGGTGGCCAACCTGGTGCCGCTGTGGTTCATCGGCACGCGGCTGCACGACGACCTGAACCGGGCCGAG TTCCTGGCGCTGTACATGGCCTGCGGCTCGCTGGGCTTCCTGGGCAGCCTGACGGTCTTTACGCTACGCGGCCAG CTGGTTGTGTCGACGCTGGGATCTTCGGGCGCGACGCTGGGCATCCTGTCGGCGTACCTGTGGGAGATACGGCGG GAGGGCTTCCGCATGTTTGGCCTGCCGAGGGACGGGGTTCACGGCGTGGTGCTACTGGGGCTACTGACGGCAGCC CAGCTGGGAGGATTGTGCAGGGCCAGCAAGTATCGAGTCGATTTCGTCTCCCACCTGGTGGGCATGGCGGTGGGT GTCGCGGGCATGGAGCTGATTATCCGCAAGAGGAGCGGAGGCAGAGAGGGTGTCAGAGCAAGCCCGAGGGCGCCG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAAGGCCGCAAGGTCGGGAACGGACGTAA |
| Gene | >Ophio5|7996 ATGGCCAGCCTCTTGTGCCCTCGCGTCTCGCACGCCCTGCTGAGGCCCGCCGTGCGCAGCATCTCATGGGCGACA TTGCAGGCGTCCCGCCTCCCCTGGAGCGGTGTATGCCAGCGTCGAGATGAGGCCCGGAGGTCCGGGACTCGGCTG CAGACGATCAGCCGACGAAGCTTCTTCAAACTGACGTCGCCCAACGTCATCACCAGATACGAAGATTTGCCGCGC GGCTACCGCGACAGCGAAGGCCTCCCGTTCGGCGGCAGAGACCTATATCTGGGCGAAATCAGGAGGATCTTTGGA CCGGACATGGACACGGACGAGGGCAATCAACTGTTACGGATATTGCATGGCCGCAGGGTCGGGGGCACGCTTGAG GACCCGGCCTTTTCTGTTCACACGGCTCGATTTACGACCCGGCAGATGGCCGACGGGCTGGCGTATCTGAGGAAG ACGGTTCCGGTGGACGAAGTGCTGAGTGCCGGGCTCAGGGCCGAGGATGAGCTGAAGCTCATGGAGATGCAGATG GAGAAGAAGCGTCAGGCGGCCGAGGTCAAGGCTAAAGGGGTGACACAGCCGATGGAGAAAGGCGAGGTTCCAGAG GCGACAAGTTGGACGACAGAGACAGAGGCGACGAAAGAAGACGACGACGTTTACAAGCCCGATGCCAGGTACGGA CGAAGCGTCCTGGACGAGATCCGGGCGCGCAACGTTGCGAAACGTAAAGCAAAGGAAAAGGCGCTCGAGGAGGAG CGGCAGGCAGCGCAGTCGGCCGAGAACCCCGGCGGCAGCGCAGTCACGCTCGTGTCGGAGGATTCGCACGCGGTG TCGAGCCAGCCGCGGAGATTCAAGAGTGCCAAGTTGGCCGAGTACTACAAAAAGGCGCAGTCGCCGCTGAAGGAG CCGCCGCGTATGTCGGCGTGGCAGCGAATCCTGCCGTCGGCCATGGTGGTGCTCCTGACGGTCGGCCTATTGGCC GGCGTGTGCGCCGTGTACGAGGAACCGACGGCGCAGTACCGACTATTCCGGGAGATTTCGGCATCGCAGGCGACG CTGGCGACGCTGATTGCCATCAACGTGCTCGTCTTTGCGTGCTGGCGGATCCCGCCGCTGTGGAAGTCGTTCAAC AAGTACATGATTATCGTGGTGGGCAAGCCCCGGGCCATTTCGATCCTGACGAGCGTCTTCTCGCATATCCTACCG TTTCACCTGGTGGCCAACCTGGTGCCGCTGTGGTTCATCGGCACGCGGCTGCACGACGACCTGAACCGGGCCGAG TTCCTGGCGCTGTACATGGCCTGCGGCTCGCTGGGCTTCCTGGGCAGCCTGACGGTCTTTACGCTACGCGGCCAG CTGGTTGTGTCGACGCTGGGATCTTCGGGCGCGACGCTGGGCATCCTGTCGGCGTACCTGTGGGAGATACGGCGG GAGGGCTTCCGCATGTTTGGCCTGCCGAGGGACGGGGTTCACGGCGTGGTGCTACTGGGGCTACTGACGGCAGCC CAGCTGGGAGGATTGTGCAGGGCCAGCAAGTATCGAGTCGATTTCGTCTCCCACCTGGTGGGCATGGCGGTGGGT GTCGCGGGCATGGAGCTGATTATCCGCAAGAGGAGCGGAGGCAGAGAGGGTGTCAGAGCAAGCCCGAGGGCGCCG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAAGGCCGCAAGGTCGGGAACGGACGTAA |