Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7988
Gene name
Locationscaffold_833:4842..6023
Strand+
Gene length (bp)1181
Transcript length (bp)1119
Coding sequence length (bp)1116
Protein length (aa) 372

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04921 XAP5 XAP5, circadian clock regulator 9.3E-95 97 359

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7LKZ5|FAM50_SCHPO FAM50 family protein C1020.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=xap5 PE=3 SV=2 16 372 5.0E-22
sp|Q299F9|FAM50_DROPS Protein FAM50 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA11514 PE=3 SV=1 8 355 6.0E-21
sp|Q7PYQ5|FAM50_ANOGA Protein FAM50 homolog OS=Anopheles gambiae GN=AGAP002062 PE=3 SV=2 5 362 5.0E-20
sp|Q9VAY7|FAM50_DROME Protein FAM50 homolog OS=Drosophila melanogaster GN=CG12259 PE=2 SV=1 3 355 4.0E-19
sp|Q16U25|FAM50_AEDAE Protein FAM50 homolog OS=Aedes aegypti GN=AAEL010045 PE=3 SV=1 5 362 5.0E-19
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Swissprot ID Swissprot Description Start End E-value
sp|Q7LKZ5|FAM50_SCHPO FAM50 family protein C1020.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=xap5 PE=3 SV=2 16 372 5.0E-22
sp|Q299F9|FAM50_DROPS Protein FAM50 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA11514 PE=3 SV=1 8 355 6.0E-21
sp|Q7PYQ5|FAM50_ANOGA Protein FAM50 homolog OS=Anopheles gambiae GN=AGAP002062 PE=3 SV=2 5 362 5.0E-20
sp|Q9VAY7|FAM50_DROME Protein FAM50 homolog OS=Drosophila melanogaster GN=CG12259 PE=2 SV=1 3 355 4.0E-19
sp|Q16U25|FAM50_AEDAE Protein FAM50 homolog OS=Aedes aegypti GN=AAEL010045 PE=3 SV=1 5 362 5.0E-19
sp|Q9WV03|FA50A_MOUSE Protein FAM50A OS=Mus musculus GN=Fam50a PE=1 SV=1 172 355 2.0E-18
sp|Q4KLV7|F50AB_XENLA Protein FAM50A-B OS=Xenopus laevis GN=fam50a-b PE=2 SV=1 178 355 3.0E-18
sp|Q28BK4|FA50A_XENTR Protein FAM50A OS=Xenopus tropicalis GN=fam50a PE=2 SV=2 178 355 4.0E-18
sp|Q568K9|FA50A_DANRE Protein FAM50A OS=Danio rerio GN=fam50a PE=2 SV=1 178 355 5.0E-18
sp|Q14320|FA50A_HUMAN Protein FAM50A OS=Homo sapiens GN=FAM50A PE=1 SV=2 172 355 7.0E-18
sp|Q2VPH1|F50AA_XENLA Protein FAM50A-A OS=Xenopus laevis GN=fam50a-a PE=2 SV=1 178 355 1.0E-17
sp|Q9WTJ8|FA50B_MOUSE Protein FAM50B OS=Mus musculus GN=Fam50b PE=2 SV=1 172 355 9.0E-17
sp|A8WXX7|FAM50_CAEBR Protein FAM50 homolog OS=Caenorhabditis briggsae GN=CBG04561 PE=3 SV=1 5 355 4.0E-16
sp|Q18691|FAM50_CAEEL Protein FAM50 homolog OS=Caenorhabditis elegans GN=C47E8.4 PE=3 SV=3 5 355 1.0E-15
sp|Q9Y247|FA50B_HUMAN Protein FAM50B OS=Homo sapiens GN=FAM50B PE=1 SV=1 172 355 5.0E-15
sp|Q8H110|XCT_ARATH Protein XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis thaliana GN=XCT PE=1 SV=1 170 355 1.0E-12
sp|Q54S94|FAM50_DICDI Protein FAM50 homolog OS=Dictyostelium discoideum GN=fam50 PE=3 SV=1 172 347 4.0E-12
sp|Q69JZ7|XCT_ORYSJ Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. japonica GN=XCT PE=2 SV=1 170 355 9.0E-12
sp|B8BDW1|XCT_ORYSI Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. indica GN=XCT PE=3 SV=1 170 355 9.0E-12
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GO

GO Term Description Terminal node
GO:0005634 nucleus Yes
GO:0110165 cellular anatomical entity No
GO:0043227 membrane-bounded organelle No
GO:0005575 cellular_component No
GO:0043229 intracellular organelle No
GO:0043231 intracellular membrane-bounded organelle No
GO:0043226 organelle No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 39 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 38.27 18.99 57.54
CcL In ants, during behavior modification 44.50 22.79 66.21
CcD In ants, recently dead 39.04 19.36 58.73

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.593617 no
SC16a CcD 0.949290 no
CcL CcD 0.646936 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7988
MDDQVSARFTPSNKTTNERLSTNTVGLVALSDFRKRRAEVLEQQEREAREAALAGASSAAESAAADSSAAENPAS
SDGGSTPAAAKRKKKTTHRRHHLGKNLLSFDDDDDDDDDDRADSTDDSSATPLASEATTDQVEPAKVRANAAVGV
VPRPVTKAALRKEATEREALRREFLALQEAVKATEIAIPFVFYDGAHIPGGTVRLKKGDFVWVFLDRCRKVGVGR
KVGEHGHHHHHHRRGWARAGVDDLMLVRDNIIIPHHYDFYYFVMNKIVGPGGRRLFDYSADAPPLPVPSSSEGLA
PAPSKATPALPDISTLQGAADDPKMTKVVDRRWYARNKHIYPASTWQEFDAEKDYANEIRKDTGGNTFFFSR
Coding >Ophio5|7988
ATGGACGATCAAGTCTCAGCGCGGTTCACACCGTCAAACAAGACGACGAACGAGCGCCTCTCAACCAACACCGTC
GGCCTCGTCGCCCTCTCCGACTTCCGCAAGCGCCGCGCCGAGGTCCTCGAGCAACAGGAGCGCGAGGCTCGCGAA
GCCGCCCTGGCAGGCGCCTCATCCGCCGCAGAATCCGCCGCAGCAGACTCCTCTGCAGCTGAGAACCCTGCCAGC
AGCGACGGCGGCTCTACGCCCGCGGCAGCCAAACGCAAGAAGAAGACGACACATCGGAGGCATCACCTGGGCAAG
AATCTACTGTCCTTTGACGACGACGACGACGACGACGACGACGACCGGGCAGACTCTACCGATGACAGCAGCGCT
ACTCCACTGGCGTCCGAGGCAACTACCGACCAGGTAGAGCCCGCCAAGGTCCGGGCCAATGCTGCCGTTGGCGTC
GTCCCCCGTCCCGTGACGAAAGCGGCGCTGCGCAAGGAGGCGACTGAGCGAGAGGCTCTCAGACGCGAGTTCCTT
GCTCTGCAGGAGGCGGTCAAGGCGACCGAAATCGCCATCCCGTTTGTCTTTTACGACGGCGCTCACATCCCGGGC
GGGACGGTGCGGTTAAAAAAGGGCGACTTTGTCTGGGTCTTCCTCGATCGCTGTCGCAAGGTTGGTGTCGGTCGC
AAGGTCGGCGAGCATGGGCATCATCACCATCACCATCGGCGCGGATGGGCCAGGGCGGGCGTCGACGATTTGATG
CTTGTGCGAGACAACATCATCATCCCTCATCATTACGACTTTTATTACTTCGTCATGAATAAAATCGTCGGTCCC
GGTGGTCGCCGTCTTTTCGACTATAGTGCCGACGCCCCCCCTCTGCCCGTCCCGTCCAGCTCCGAGGGCCTCGCC
CCCGCCCCGTCCAAGGCGACGCCCGCGCTGCCCGACATCAGCACGCTCCAAGGTGCAGCCGACGATCCGAAAATG
ACAAAGGTGGTCGACCGAAGGTGGTATGCGCGGAATAAACACATCTATCCGGCCAGCACTTGGCAGGAGTTTGAC
GCGGAGAAGGACTATGCCAACGAGATTCGCAAGGACACGGGTGGTAACACGTTTTTCTTTTCGCGG
Transcript >Ophio5|7988
ATGGACGATCAAGTCTCAGCGCGGTTCACACCGTCAAACAAGACGACGAACGAGCGCCTCTCAACCAACACCGTC
GGCCTCGTCGCCCTCTCCGACTTCCGCAAGCGCCGCGCCGAGGTCCTCGAGCAACAGGAGCGCGAGGCTCGCGAA
GCCGCCCTGGCAGGCGCCTCATCCGCCGCAGAATCCGCCGCAGCAGACTCCTCTGCAGCTGAGAACCCTGCCAGC
AGCGACGGCGGCTCTACGCCCGCGGCAGCCAAACGCAAGAAGAAGACGACACATCGGAGGCATCACCTGGGCAAG
AATCTACTGTCCTTTGACGACGACGACGACGACGACGACGACGACCGGGCAGACTCTACCGATGACAGCAGCGCT
ACTCCACTGGCGTCCGAGGCAACTACCGACCAGGTAGAGCCCGCCAAGGTCCGGGCCAATGCTGCCGTTGGCGTC
GTCCCCCGTCCCGTGACGAAAGCGGCGCTGCGCAAGGAGGCGACTGAGCGAGAGGCTCTCAGACGCGAGTTCCTT
GCTCTGCAGGAGGCGGTCAAGGCGACCGAAATCGCCATCCCGTTTGTCTTTTACGACGGCGCTCACATCCCGGGC
GGGACGGTGCGGTTAAAAAAGGGCGACTTTGTCTGGGTCTTCCTCGATCGCTGTCGCAAGGTTGGTGTCGGTCGC
AAGGTCGGCGAGCATGGGCATCATCACCATCACCATCGGCGCGGATGGGCCAGGGCGGGCGTCGACGATTTGATG
CTTGTGCGAGACAACATCATCATCCCTCATCATTACGACTTTTATTACTTCGTCATGAATAAAATCGTCGGTCCC
GGTGGTCGCCGTCTTTTCGACTATAGTGCCGACGCCCCCCCTCTGCCCGTCCCGTCCAGCTCCGAGGGCCTCGCC
CCCGCCCCGTCCAAGGCGACGCCCGCGCTGCCCGACATCAGCACGCTCCAAGGTGCAGCCGACGATCCGAAAATG
ACAAAGGTGGTCGACCGAAGGTGGTATGCGCGGAATAAACACATCTATCCGGCCAGCACTTGGCAGGAGTTTGAC
GCGGAGAAGGACTATGCCAACGAGATTCGCAAGGACACGGGTGGTAACACGTTTTTCTTTTCGCGGTGA
Gene >Ophio5|7988
ATGGACGATCAAGTCTCAGCGCGGTTCACACCGTCAAACAAGACGACGAACGAGCGCCTCTCAACCAACACCGTC
GGCCTCGTCGCCCTCTCCGACTTCCGCAAGCGCCGCGCCGAGGTCCTCGAGCAACAGGAGCGCGAGGCTCGCGAA
GCCGCCCTGGCAGGCGCCTCATCCGCCGCAGAATCCGCCGCAGCAGACTCCTCTGCAGCTGAGAACCCTGCCAGC
AGCGACGGCGGCTCTACGCCCGCGGCAGCCAAACGCAAGAAGAAGACGACACATCGGAGGCATCACCTGGGCAAG
AATCTACTGTCCTTTGACGACGACGACGACGACGACGACGACGACCGGGCAGACTCTACCGATGACAGCAGCGCT
ACTCCACTGGCGTCCGAGGCAACTACCGACCAGGTAGAGCCCGCCAAGGTCCGGGCCAATGCTGCCGTTGGCGTC
GTCCCCCGTCCCGTGACGAAAGCGGCGCTGCGCAAGGAGGCGACTGAGCGAGAGGCTCTCAGACGCGAGTTCCTT
GCTCTGCAGGAGGCGGTCAAGGCGACCGAAATCGCCATCCCGTTTGTCTTTTACGACGGCGCTCACATCCCGGGC
GGGACGGTGCGGTTAAAAAAGGGCGACTTTGTCTGGGTCTTCCTCGATCGCTGTCGCAAGGTTGGTGTCGGTCGC
AAGGTCGGCGAGCATGGGCATCATCACCATCACCATCGGCGCGGATGGGCCAGGGCGGGCGTCGACGATTTGATG
CTTGTGCGAGACAACATCATCATCCCTCATGTGCCTCATCCCATCTCCTACCATTGGTAAAACACGTACAGACTT
GACTGACTGTTGCACAGCATTACGACTTTTATTACTTCGTCATGAATAAAATCGTCGGTCCCGGTGGTCGCCGTC
TTTTCGACTATAGTGCCGACGCCCCCCCTCTGCCCGTCCCGTCCAGCTCCGAGGGCCTCGCCCCCGCCCCGTCCA
AGGCGACGCCCGCGCTGCCCGACATCAGCACGCTCCAAGGTGCAGCCGACGATCCGAAAATGACAAAGGTGGTCG
ACCGAAGGTGGTATGCGCGGAATAAACACATCTATCCGGCCAGCACTTGGCAGGAGTTTGACGCGGAGAAGGACT
ATGCCAACGAGATTCGCAAGGACACGGGTGGTAACACGTTTTTCTTTTCGCGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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