Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7974
Gene name
Locationscaffold_83:36228..37083
Strand+
Gene length (bp)855
Transcript length (bp)855
Coding sequence length (bp)852
Protein length (aa) 284

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01375 Enterotoxin_a Heat-labile enterotoxin alpha chain 1.4E-14 32 224

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P01555|CHTA_VIBCH Cholera enterotoxin subunit A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=ctxA PE=1 SV=1 34 149 5.0E-06

GO

GO Term Description Terminal node
GO:0090729 toxin activity Yes
GO:0005615 extracellular space Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7974
MKAIFSISNLLAGAAAASLGAPAQLRASNRVEIVYRGDPRPPSELRQLGGIATEYGERPFTNDSFGLEAHHRNLG
RLGNFMSVYTSTSRWFGVTEPYATNFRESDGWIYRIRATPNMIDMVDSGFRITHGNESEFSAMGGIRWDQIQGWT
PAFEKDLRVTSENMTKEDVIFDTCRVFKTRKASWIANVEYNHVYDQYSASGGQPQLAGDSPEQTRQRNKTLEEHG
LEFMRRNGGPVGWDGKNGPFLTLVPPQRPWKGPFPLDADEVAPLGRLNVTLCDDPPTWD
Coding >Ophio5|7974
ATGAAGGCCATCTTCTCCATCAGCAACCTCCTCGCCGGGGCTGCAGCTGCATCGCTTGGAGCTCCTGCACAGCTC
AGAGCCAGCAACAGGGTCGAGATTGTCTACCGGGGGGACCCGAGACCGCCGAGCGAGCTGCGACAACTTGGGGGG
ATAGCAACCGAATACGGGGAGCGTCCCTTCACCAACGATTCTTTCGGTCTGGAGGCGCACCACCGCAACTTGGGA
CGACTCGGAAATTTCATGTCCGTCTACACCTCGACGTCGAGGTGGTTCGGAGTCACGGAGCCATATGCCACCAAC
TTCAGGGAGTCGGACGGCTGGATCTACAGAATCCGTGCCACCCCGAACATGATCGACATGGTCGATTCCGGCTTC
CGCATCACTCACGGGAACGAGTCCGAGTTCTCGGCCATGGGAGGCATCCGCTGGGATCAGATCCAAGGCTGGACA
CCGGCCTTTGAAAAAGACTTGCGAGTGACGAGTGAGAACATGACAAAAGAGGATGTCATATTCGATACCTGCCGA
GTATTCAAGACGAGAAAGGCTTCATGGATCGCAAACGTCGAATACAACCACGTCTACGATCAATACTCTGCCAGC
GGCGGGCAGCCACAGCTTGCCGGTGACTCTCCGGAGCAGACGAGGCAGCGAAACAAGACGCTGGAGGAACATGGT
CTCGAGTTCATGCGAAGGAACGGGGGCCCGGTTGGTTGGGACGGGAAGAACGGCCCCTTTCTCACCCTCGTGCCT
CCCCAGCGACCGTGGAAGGGGCCTTTTCCGCTCGACGCCGACGAGGTTGCGCCTCTCGGGCGGTTGAATGTCACG
TTGTGCGACGATCCGCCGACGTGGGAC
Transcript >Ophio5|7974
ATGAAGGCCATCTTCTCCATCAGCAACCTCCTCGCCGGGGCTGCAGCTGCATCGCTTGGAGCTCCTGCACAGCTC
AGAGCCAGCAACAGGGTCGAGATTGTCTACCGGGGGGACCCGAGACCGCCGAGCGAGCTGCGACAACTTGGGGGG
ATAGCAACCGAATACGGGGAGCGTCCCTTCACCAACGATTCTTTCGGTCTGGAGGCGCACCACCGCAACTTGGGA
CGACTCGGAAATTTCATGTCCGTCTACACCTCGACGTCGAGGTGGTTCGGAGTCACGGAGCCATATGCCACCAAC
TTCAGGGAGTCGGACGGCTGGATCTACAGAATCCGTGCCACCCCGAACATGATCGACATGGTCGATTCCGGCTTC
CGCATCACTCACGGGAACGAGTCCGAGTTCTCGGCCATGGGAGGCATCCGCTGGGATCAGATCCAAGGCTGGACA
CCGGCCTTTGAAAAAGACTTGCGAGTGACGAGTGAGAACATGACAAAAGAGGATGTCATATTCGATACCTGCCGA
GTATTCAAGACGAGAAAGGCTTCATGGATCGCAAACGTCGAATACAACCACGTCTACGATCAATACTCTGCCAGC
GGCGGGCAGCCACAGCTTGCCGGTGACTCTCCGGAGCAGACGAGGCAGCGAAACAAGACGCTGGAGGAACATGGT
CTCGAGTTCATGCGAAGGAACGGGGGCCCGGTTGGTTGGGACGGGAAGAACGGCCCCTTTCTCACCCTCGTGCCT
CCCCAGCGACCGTGGAAGGGGCCTTTTCCGCTCGACGCCGACGAGGTTGCGCCTCTCGGGCGGTTGAATGTCACG
TTGTGCGACGATCCGCCGACGTGGGACTAG
Gene >Ophio5|7974
ATGAAGGCCATCTTCTCCATCAGCAACCTCCTCGCCGGGGCTGCAGCTGCATCGCTTGGAGCTCCTGCACAGCTC
AGAGCCAGCAACAGGGTCGAGATTGTCTACCGGGGGGACCCGAGACCGCCGAGCGAGCTGCGACAACTTGGGGGG
ATAGCAACCGAATACGGGGAGCGTCCCTTCACCAACGATTCTTTCGGTCTGGAGGCGCACCACCGCAACTTGGGA
CGACTCGGAAATTTCATGTCCGTCTACACCTCGACGTCGAGGTGGTTCGGAGTCACGGAGCCATATGCCACCAAC
TTCAGGGAGTCGGACGGCTGGATCTACAGAATCCGTGCCACCCCGAACATGATCGACATGGTCGATTCCGGCTTC
CGCATCACTCACGGGAACGAGTCCGAGTTCTCGGCCATGGGAGGCATCCGCTGGGATCAGATCCAAGGCTGGACA
CCGGCCTTTGAAAAAGACTTGCGAGTGACGAGTGAGAACATGACAAAAGAGGATGTCATATTCGATACCTGCCGA
GTATTCAAGACGAGAAAGGCTTCATGGATCGCAAACGTCGAATACAACCACGTCTACGATCAATACTCTGCCAGC
GGCGGGCAGCCACAGCTTGCCGGTGACTCTCCGGAGCAGACGAGGCAGCGAAACAAGACGCTGGAGGAACATGGT
CTCGAGTTCATGCGAAGGAACGGGGGCCCGGTTGGTTGGGACGGGAAGAACGGCCCCTTTCTCACCCTCGTGCCT
CCCCAGCGACCGTGGAAGGGGCCTTTTCCGCTCGACGCCGACGAGGTTGCGCCTCTCGGGCGGTTGAATGTCACG
TTGTGCGACGATCCGCCGACGTGGGACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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