Protein ID | Ophio5|7962 |
Gene name | |
Location | scaffold_829:3103..4282 |
Strand | - |
Gene length (bp) | 1179 |
Transcript length (bp) | 1035 |
Coding sequence length (bp) | 1032 |
Protein length (aa) | 344 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 36 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 49 | 71 | 22 |
2 | 136 | 158 | 22 |
3 | 185 | 207 | 22 |
4 | 227 | 249 | 22 |
5 | 288 | 306 | 18 |
6 | 321 | 343 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 103.25 | 55.93 | 150.58 |
CcL | In ants, during behavior modification | 75.06 | 39.19 | 110.92 |
CcD | In ants, recently dead | 114.37 | 62.19 | 166.54 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.186878 | no |
SC16a | CcD | 0.701614 | no |
CcL | CcD | 0.061851 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|7962 MAPATRSSSGVLERVPEDETTPERMPDETKKADATSVGARARQDCCADGLRFLIVVAISFCMASLGYSFVGELSR GRLAAVSRSQDSWAEIATLAAWRIFELGLSWFSGLDALDVAMLDLLAHGPLFYLQATFYSLGATTAASALLVDVL AAATPFYLMRPLSAVHRPASRGSSFADVIDLPLQLYTSALAASIYTIIVALSLRLVLPRILVVYFPGLPSLEPAY AASYADVLPATGLFGAAASALIYAPSATTPRDAADRKHFDPVTATLGETVRWNLWGYSSRTKIAVCRTAAAMLLV GVNTYLSCTRTMYGVETPGAVAYAAVWVVAALCSGLALGLVGGA |
Coding | >Ophio5|7962 ATGGCGCCGGCGACACGGAGCTCGAGCGGGGTGCTGGAGCGAGTGCCGGAAGACGAGACGACGCCGGAACGGATG CCAGACGAGACCAAGAAGGCGGACGCGACGTCGGTCGGGGCTCGGGCGCGGCAAGATTGCTGCGCTGATGGCTTG CGCTTCCTCATCGTCGTCGCCATCAGCTTCTGTATGGCGAGTCTGGGATACAGCTTCGTGGGCGAACTGAGCCGG GGACGGTTGGCGGCCGTGAGCCGGAGCCAGGACTCGTGGGCTGAGATTGCTACCCTGGCGGCCTGGAGAATCTTC GAGTTGGGACTGTCTTGGTTCAGCGGTCTGGATGCCCTGGATGTGGCCATGCTCGATCTTCTGGCACACGGTCCT CTGTTCTATCTTCAGGCTACCTTTTACTCGCTCGGCGCCACCACAGCGGCGTCTGCGCTGCTCGTCGATGTGCTG GCCGCCGCCACACCTTTCTATCTCATGCGCCCACTTTCGGCCGTCCACCGGCCCGCGTCTCGTGGCAGCTCCTTC GCCGACGTCATCGATCTGCCGCTGCAACTGTACACGTCTGCGCTGGCAGCGAGCATCTACACCATCATCGTCGCC CTCTCGCTGCGACTCGTCCTACCGCGCATCCTCGTCGTCTACTTCCCCGGCTTGCCCAGCCTCGAGCCAGCCTAC GCGGCATCGTACGCCGACGTGCTTCCCGCGACAGGCCTTTTCGGCGCCGCGGCCAGTGCCTTGATCTACGCGCCC TCGGCTACTACGCCCCGTGACGCGGCTGACCGAAAACACTTCGATCCGGTGACGGCTACGCTGGGCGAGACGGTG CGGTGGAACCTGTGGGGTTACTCGTCTCGCACAAAGATTGCTGTCTGTCGCACGGCAGCAGCGATGCTCCTCGTT GGCGTCAACACATACCTCTCCTGCACCAGGACCATGTATGGCGTCGAGACGCCTGGTGCCGTCGCTTACGCCGCC GTCTGGGTCGTGGCCGCGTTGTGCTCGGGGCTGGCGCTCGGCTTGGTCGGTGGCGCT |
Transcript | >Ophio5|7962 ATGGCGCCGGCGACACGGAGCTCGAGCGGGGTGCTGGAGCGAGTGCCGGAAGACGAGACGACGCCGGAACGGATG CCAGACGAGACCAAGAAGGCGGACGCGACGTCGGTCGGGGCTCGGGCGCGGCAAGATTGCTGCGCTGATGGCTTG CGCTTCCTCATCGTCGTCGCCATCAGCTTCTGTATGGCGAGTCTGGGATACAGCTTCGTGGGCGAACTGAGCCGG GGACGGTTGGCGGCCGTGAGCCGGAGCCAGGACTCGTGGGCTGAGATTGCTACCCTGGCGGCCTGGAGAATCTTC GAGTTGGGACTGTCTTGGTTCAGCGGTCTGGATGCCCTGGATGTGGCCATGCTCGATCTTCTGGCACACGGTCCT CTGTTCTATCTTCAGGCTACCTTTTACTCGCTCGGCGCCACCACAGCGGCGTCTGCGCTGCTCGTCGATGTGCTG GCCGCCGCCACACCTTTCTATCTCATGCGCCCACTTTCGGCCGTCCACCGGCCCGCGTCTCGTGGCAGCTCCTTC GCCGACGTCATCGATCTGCCGCTGCAACTGTACACGTCTGCGCTGGCAGCGAGCATCTACACCATCATCGTCGCC CTCTCGCTGCGACTCGTCCTACCGCGCATCCTCGTCGTCTACTTCCCCGGCTTGCCCAGCCTCGAGCCAGCCTAC GCGGCATCGTACGCCGACGTGCTTCCCGCGACAGGCCTTTTCGGCGCCGCGGCCAGTGCCTTGATCTACGCGCCC TCGGCTACTACGCCCCGTGACGCGGCTGACCGAAAACACTTCGATCCGGTGACGGCTACGCTGGGCGAGACGGTG CGGTGGAACCTGTGGGGTTACTCGTCTCGCACAAAGATTGCTGTCTGTCGCACGGCAGCAGCGATGCTCCTCGTT GGCGTCAACACATACCTCTCCTGCACCAGGACCATGTATGGCGTCGAGACGCCTGGTGCCGTCGCTTACGCCGCC GTCTGGGTCGTGGCCGCGTTGTGCTCGGGGCTGGCGCTCGGCTTGGTCGGTGGCGCTTAG |
Gene | >Ophio5|7962 ATGGCGCCGGCGACACGGAGCTCGAGCGGGGTGCTGGAGCGAGTGCCGGAAGACGAGACGACGCCGGAACGGATG CCAGACGAGACCAAGAAGGCGGACGCGACGTCGGTCGGGGCTCGGGCGCGGCAAGATTGCTGCGCTGATGGCTTG CGCTTCCTCATCGTCGTCGCCATCAGCTTCTGTATGGCGAGTCTGGGATACAGCTTCGTGGGCGAACTGAGCCGG GGACGGTTGGCGGCCGTGAGCCGGAGCCAGGACTCGTGGGCTGAGATTGCTACCCTGGCGGCCTGGAGAATGTGA GTTTCCCGACATGCCAAGGGTCCACAAACGTCCGGCGGTCAGGCTGACTGACGCCCGCTTCTCCCCCGGCCGGTA GCTTCGAGTTGGGACTGTCTTGGTTCAGCGGTCTGGATGCCCTGGATGTGGCCATGCTCGATCTTCTGGCACACG GTCCTCTGGTAAGTGCAGGAGCCCTCGGTTCCCTTGGCTTGTCGACGTGACGTTGACGAGGATGCGGTCCAGTTC TATCTTCAGGCTACCTTTTACTCGCTCGGCGCCACCACAGCGGCGTCTGCGCTGCTCGTCGATGTGCTGGCCGCC GCCACACCTTTCTATCTCATGCGCCCACTTTCGGCCGTCCACCGGCCCGCGTCTCGTGGCAGCTCCTTCGCCGAC GTCATCGATCTGCCGCTGCAACTGTACACGTCTGCGCTGGCAGCGAGCATCTACACCATCATCGTCGCCCTCTCG CTGCGACTCGTCCTACCGCGCATCCTCGTCGTCTACTTCCCCGGCTTGCCCAGCCTCGAGCCAGCCTACGCGGCA TCGTACGCCGACGTGCTTCCCGCGACAGGCCTTTTCGGCGCCGCGGCCAGTGCCTTGATCTACGCGCCCTCGGCT ACTACGCCCCGTGACGCGGCTGACCGAAAACACTTCGATCCGGTGACGGCTACGCTGGGCGAGACGGTGCGGTGG AACCTGTGGGGTTACTCGTCTCGCACAAAGATTGCTGTCTGTCGCACGGCAGCAGCGATGCTCCTCGTTGGCGTC AACACATACCTCTCCTGCACCAGGACCATGTATGGCGTCGAGACGCCTGGTGCCGTCGCTTACGCCGCCGTCTGG GTCGTGGCCGCGTTGTGCTCGGGGCTGGCGCTCGGCTTGGTCGGTGGCGCTTAG |