© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7952 |
| Gene name | |
| Location | scaffold_825:14..1865 |
| Strand | - |
| Gene length (bp) | 1851 |
| Transcript length (bp) | 1302 |
| Coding sequence length (bp) | 1299 |
| Protein length (aa) | 433 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 1.1E-21 | 97 | 262 |
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 1.8E-21 | 300 | 433 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59768|VCX1_SCHPO | Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 | 44 | 433 | 2.0E-116 |
| sp|Q99385|VCX1_YEAST | Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 | 49 | 433 | 3.0E-109 |
| sp|Q75XW3|CAX_APHHA | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 | 80 | 432 | 1.0E-87 |
| sp|Q39254|CAX2_ARATH | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 | 2 | 431 | 4.0E-84 |
| sp|Q6K1C4|CAX3_ORYSJ | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2 | 69 | 431 | 5.0E-81 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59768|VCX1_SCHPO | Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 | 44 | 433 | 2.0E-116 |
| sp|Q99385|VCX1_YEAST | Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 | 49 | 433 | 3.0E-109 |
| sp|Q75XW3|CAX_APHHA | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 | 80 | 432 | 1.0E-87 |
| sp|Q39254|CAX2_ARATH | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 | 2 | 431 | 4.0E-84 |
| sp|Q6K1C4|CAX3_ORYSJ | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2 | 69 | 431 | 5.0E-81 |
| sp|Q8L783|CAX5_ARATH | Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1 | 69 | 431 | 5.0E-80 |
| sp|Q5KQN0|CAX2_ORYSJ | Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2 | 69 | 431 | 2.0E-77 |
| sp|P74072|CAX_SYNY3 | Ca(2+)/H(+) antiporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1336 PE=1 SV=1 | 80 | 432 | 1.0E-76 |
| sp|Q9LFZ8|CAX6_ARATH | Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3 | 69 | 431 | 1.0E-75 |
| sp|Q93Z81|CAX3_ARATH | Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1 | 46 | 431 | 6.0E-71 |
| sp|Q39253|CAX1_ARATH | Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3 | 46 | 431 | 1.0E-69 |
| sp|Q5TKG3|CAX1B_ORYSJ | Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1 | 84 | 430 | 8.0E-69 |
| sp|Q945S5|CAX4_ARATH | Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2 | 84 | 431 | 2.0E-66 |
| sp|Q6YXZ1|CAX4_ORYSJ | Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1 | 69 | 431 | 3.0E-66 |
| sp|Q769E5|CAX1A_ORYSJ | Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1 | 84 | 431 | 9.0E-63 |
| sp|O34840|CHAA_BACSU | Ca(2+)/H(+) antiporter ChaA OS=Bacillus subtilis (strain 168) GN=chaA PE=1 SV=1 | 84 | 432 | 1.0E-57 |
| sp|Q5KTQ9|CAX1C_ORYSJ | Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1 | 84 | 427 | 8.0E-49 |
| sp|P42839|VNX1_YEAST | Low affinity vacuolar monovalent cation/H(+) antiporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VNX1 PE=1 SV=1 | 65 | 433 | 4.0E-31 |
| sp|Q9P7B3|YI14_SCHPO | Putative cation exchanger C521.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC521.04c PE=1 SV=1 | 62 | 267 | 3.0E-13 |
| sp|Q9P7B3|YI14_SCHPO | Putative cation exchanger C521.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC521.04c PE=1 SV=1 | 275 | 431 | 3.0E-12 |
| sp|P55471|Y4HA_RHISN | Putative ionic transporter y4hA OS=Rhizobium sp. (strain NGR234) GN=NGR_a03490 PE=3 SV=1 | 120 | 433 | 4.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 71 | 93 | 22 |
| 2 | 100 | 119 | 19 |
| 3 | 129 | 151 | 22 |
| 4 | 163 | 185 | 22 |
| 5 | 205 | 227 | 22 |
| 6 | 240 | 262 | 22 |
| 7 | 299 | 321 | 22 |
| 8 | 334 | 356 | 22 |
| 9 | 366 | 388 | 22 |
| 10 | 395 | 417 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 67.47 | 37.09 | 97.84 |
| CcL | In ants, during behavior modification | 33.96 | 15.79 | 52.13 |
| CcD | In ants, recently dead | 30.77 | 15.08 | 46.46 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.005499 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.750506 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7952 MNRKDDAAGERTPLINDQQSASGSAPAVQPSCPRPSGLCAFFLDSKHTPGRESGSVAVRGLAHTWHVTKVTLLSN YVNFLLLFVPLGIVAGACHWNSTAVFTINFFAIIPLAAVLSFATEEISIKLGETMGGLLNATFGNAVELIVSIVA LKDGQIEVVQSSMLGSILSNLLLVMGMCFLFGGIVHRGQNGQGTEQRFSPAVAQTTCSLMTLSSASLVIPAALYA VLTQNGSDEKQNSILILSRGTAIILFLLYSLYLVFQLRTHSNLFDPESPPETATTEAVQHEAEEEAPAMSAPAAA AVLVVVTVLVAICADYLVGSIDDIVATAHISKAFLGMILIPIVGNAAEHVTAVVVALRDKMDLAMGVAIGSSIQI ALGVTPFLVIVGWIIGQPMSLHFETFQTVAFAVSVLVVTYTVQDGRSNYLEGAMLLAL |
| Coding | >Ophio5|7952 ATGAATCGCAAAGACGACGCCGCTGGCGAGCGTACGCCCCTCATCAATGACCAACAGTCGGCCTCTGGATCCGCT CCTGCTGTCCAGCCATCTTGTCCCCGGCCCTCCGGCTTATGTGCCTTCTTTCTCGACTCCAAGCACACGCCGGGC AGGGAGAGCGGCAGCGTCGCCGTTCGTGGCCTCGCTCACACTTGGCACGTCACCAAAGTGACGCTCCTCAGCAAC TATGTCAACTTCCTTCTCCTCTTCGTGCCACTCGGCATCGTCGCCGGCGCTTGCCACTGGAATTCGACGGCCGTC TTCACCATCAACTTCTTTGCCATTATCCCCCTCGCCGCCGTCTTGTCCTTTGCGACCGAGGAGATTTCCATCAAG CTCGGCGAGACTATGGGCGGTCTTCTTAACGCTACCTTTGGCAATGCCGTCGAATTGATTGTCAGTATCGTCGCC CTCAAGGACGGTCAGATCGAAGTGGTACAGTCGTCTATGCTGGGCTCTATCCTGTCCAACCTGCTGCTCGTCATG GGCATGTGCTTCCTCTTCGGCGGCATCGTTCATCGTGGCCAGAATGGTCAGGGCACCGAGCAGCGCTTCTCCCCC GCCGTCGCCCAGACTACCTGCTCTCTCATGACGCTCTCCTCCGCCTCCCTCGTCATCCCCGCTGCCCTCTACGCC GTCCTCACCCAAAATGGGTCGGATGAAAAGCAAAACAGCATCCTCATCCTGTCGAGAGGCACCGCCATCATTCTC TTCCTGCTCTACTCCCTGTACCTCGTCTTTCAGCTACGCACCCACAGCAACCTGTTTGACCCGGAGAGTCCCCCC GAGACTGCCACCACGGAGGCTGTCCAACATGAAGCGGAAGAGGAGGCGCCGGCCATGAGCGCCCCCGCTGCCGCC GCCGTCCTCGTCGTCGTCACCGTCCTCGTCGCCATCTGCGCCGATTATCTGGTCGGGAGCATCGACGACATCGTC GCCACCGCCCACATCAGCAAGGCCTTCCTCGGTATGATTCTGATTCCCATCGTTGGCAACGCCGCCGAGCACGTC ACCGCCGTCGTCGTCGCCCTTCGCGACAAGATGGACCTGGCCATGGGCGTCGCCATTGGCTCCTCGATACAAATC GCCCTCGGCGTCACGCCCTTCCTCGTCATCGTCGGCTGGATCATCGGACAGCCCATGTCGCTGCACTTTGAGACG TTCCAGACCGTTGCCTTTGCCGTCTCCGTCTTGGTCGTCACCTACACCGTCCAGGACGGTCGGTCCAACTACCTC GAGGGCGCAATGCTCCTCGCCCTG |
| Transcript | >Ophio5|7952 ATGAATCGCAAAGACGACGCCGCTGGCGAGCGTACGCCCCTCATCAATGACCAACAGTCGGCCTCTGGATCCGCT CCTGCTGTCCAGCCATCTTGTCCCCGGCCCTCCGGCTTATGTGCCTTCTTTCTCGACTCCAAGCACACGCCGGGC AGGGAGAGCGGCAGCGTCGCCGTTCGTGGCCTCGCTCACACTTGGCACGTCACCAAAGTGACGCTCCTCAGCAAC TATGTCAACTTCCTTCTCCTCTTCGTGCCACTCGGCATCGTCGCCGGCGCTTGCCACTGGAATTCGACGGCCGTC TTCACCATCAACTTCTTTGCCATTATCCCCCTCGCCGCCGTCTTGTCCTTTGCGACCGAGGAGATTTCCATCAAG CTCGGCGAGACTATGGGCGGTCTTCTTAACGCTACCTTTGGCAATGCCGTCGAATTGATTGTCAGTATCGTCGCC CTCAAGGACGGTCAGATCGAAGTGGTACAGTCGTCTATGCTGGGCTCTATCCTGTCCAACCTGCTGCTCGTCATG GGCATGTGCTTCCTCTTCGGCGGCATCGTTCATCGTGGCCAGAATGGTCAGGGCACCGAGCAGCGCTTCTCCCCC GCCGTCGCCCAGACTACCTGCTCTCTCATGACGCTCTCCTCCGCCTCCCTCGTCATCCCCGCTGCCCTCTACGCC GTCCTCACCCAAAATGGGTCGGATGAAAAGCAAAACAGCATCCTCATCCTGTCGAGAGGCACCGCCATCATTCTC TTCCTGCTCTACTCCCTGTACCTCGTCTTTCAGCTACGCACCCACAGCAACCTGTTTGACCCGGAGAGTCCCCCC GAGACTGCCACCACGGAGGCTGTCCAACATGAAGCGGAAGAGGAGGCGCCGGCCATGAGCGCCCCCGCTGCCGCC GCCGTCCTCGTCGTCGTCACCGTCCTCGTCGCCATCTGCGCCGATTATCTGGTCGGGAGCATCGACGACATCGTC GCCACCGCCCACATCAGCAAGGCCTTCCTCGGTATGATTCTGATTCCCATCGTTGGCAACGCCGCCGAGCACGTC ACCGCCGTCGTCGTCGCCCTTCGCGACAAGATGGACCTGGCCATGGGCGTCGCCATTGGCTCCTCGATACAAATC GCCCTCGGCGTCACGCCCTTCCTCGTCATCGTCGGCTGGATCATCGGACAGCCCATGTCGCTGCACTTTGAGACG TTCCAGACCGTTGCCTTTGCCGTCTCCGTCTTGGTCGTCACCTACACCGTCCAGGACGGTCGGTCCAACTACCTC GAGGGCGCAATGCTCCTCGCCCTGTAG |
| Gene | >Ophio5|7952 ATGAATCGCAAAGACGACGCCGCTGGCGAGCGTACGCCCCTCATCAATGACCAACAGTCGGCCTCTGGATCCGCT CCTGCTGTCCAGCCATCTTGTCCCCGGCCCTCCGGCTTATGTGCCTTCTTTCTCGACTCCAAGCACACGCCGGGC AGGGAGAGCGGCAGCGTCGCCGTTCGTGGCCTCGCTCACACTTGGCACGTCACCAAAGTGACGCTCCTCAGCAGT ACGCGCACCAGGCAGACCCGGCCATGTTGGTGATTTTCCTGAAAGCTAATAAGCATCGCAGACTATGTCAACTTC CTTCTCCTCTTCGTGCCACTCGGCATCGTCGCCGGCGCTTGCCACTGGAATTCGACGGCCGTCTTCACCATCAAC TTCTTTGCCATTATCCCCCTCGCCGCCGTCTTGTCCTTTGCGACCGAGGAGATTTCCATCAAGCTCGGCGAGACT ATGGGCGGTCTTCTTAACGCTACCTTTGGCAATGCCGTCGAATTGATTGTCTGTCCGCCTTTTCTCTTCGCCCTT GATCGTTCTGTCTGCTGACCCTTTTTTTTCCTTAGGTCAGTATCGTCGCCCTCAAGGACGGTCAGATCGAAGTGG TACAGTCGTCTATGCTGGGCTCTATCCTGTCCAACCTGCTGCTCGTCATGGGCATGTGCTTCCTCTTCGGCGGCA TCGTTCATCGTGGCCAGAATGGTCAGGGCACCGAGCAGCGCTTCTCCCCCGCCGTCGCCCAGACTACCTGCTCTC TCATGACGCTCTCCTCCGCCTCCCTCGTCATCCCCGCTGCCGTGAGTCTCCGGCCCCGTCGTCGTCTAGTCGAGG AGCGCTGACATGGCCCGCCAGCTCTACGCCGTCCTCACCCAAAATGGGTCGGATGAAAAGCAAAACAGCATCCTC ATCCTGTCGAGAGGCACCGCCATCATTCTCTTCCTGCTCTACTCCCTGTACCTCGTCTTTCAGCTACGCACCCAC AGCAACCTGTTTGACCCGGAGAGTCCCCCCGAGACTGCCACCACGGAGGCTGTCCAACATGAAGCGGAAGAGGAG GCGCCGGCCATGAGCGCCCCCGCTGCCGCCGCCGTCCTCGTCGTCGTCACCGTCCTCGTCGCCATCTGCGCCGAT TATCTGGTCGGGAGCATCGACGACATCGTCGCCACCGCCCACATCAGCAAGGCCTTCCTCGGTATGATTCTGATT CCCATCGTTGGCAACGCCGCCGAGCACGTCACCGCCGTCGTCGTCGCCCTTCGCGACAAGATGGACCTGGCCATG GGCGTCGCCATTGGCTCCTCGATACAAATCGCCCTCGGCGTCACGCCCTTCCTCGTCATCGTCGGCTGGATCATC GGACAGCCCATGTCGCTGCACTTTGAGACGTGTACGTTTTGCATCTTCCACTCCTCGTCGGCTCCCGTCTAACAG AGCCGAACAGTCCAGACCGTTGCCTTTGCCGTCTCCGTCTTGGTCGTCACCTACACCGTCCAGGACGGTCGGTCC AACTACCTCGAGGGCGCAATGCTCCTCGCCCTGTACATCATCATCGCCGTCGCNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNTTTTTTTTTTCCCTCTTCTTTCCTTATTTCTGTTTTCTTTTGTACTGGAGCCACCGTCCGGGGCCGGAAA GCAGAGACGATTCGTGGCCAATACCCTGGGCTTTTGGGGGGGTCGAGAGAGTCATGAGACTACCTATTCCCTGTA TTCGTACCTGCGTGTCGGCGACTTGGCTCCGTAGCGGGACTACCCAGGTAG |