© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7950 |
| Gene name | |
| Location | scaffold_824:567..2821 |
| Strand | - |
| Gene length (bp) | 2254 |
| Transcript length (bp) | 1776 |
| Coding sequence length (bp) | 1773 |
| Protein length (aa) | 591 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00566 | RabGAP-TBC | Rab-GTPase-TBC domain | 5.9E-47 | 278 | 531 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59737|GYP1_SCHPO | GTPase-activating protein gyp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp1 PE=3 SV=1 | 244 | 578 | 7.0E-139 |
| sp|Q95LL3|TB22B_MACFA | TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B PE=2 SV=1 | 77 | 578 | 7.0E-113 |
| sp|Q9NU19|TB22B_HUMAN | TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3 | 77 | 578 | 8.0E-113 |
| sp|Q8WUA7|TB22A_HUMAN | TBC1 domain family member 22A OS=Homo sapiens GN=TBC1D22A PE=1 SV=2 | 227 | 578 | 1.0E-106 |
| sp|Q8R5A6|TB22A_MOUSE | TBC1 domain family member 22A OS=Mus musculus GN=Tbc1d22a PE=1 SV=3 | 111 | 578 | 2.0E-106 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59737|GYP1_SCHPO | GTPase-activating protein gyp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp1 PE=3 SV=1 | 244 | 578 | 7.0E-139 |
| sp|Q95LL3|TB22B_MACFA | TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B PE=2 SV=1 | 77 | 578 | 7.0E-113 |
| sp|Q9NU19|TB22B_HUMAN | TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3 | 77 | 578 | 8.0E-113 |
| sp|Q8WUA7|TB22A_HUMAN | TBC1 domain family member 22A OS=Homo sapiens GN=TBC1D22A PE=1 SV=2 | 227 | 578 | 1.0E-106 |
| sp|Q8R5A6|TB22A_MOUSE | TBC1 domain family member 22A OS=Mus musculus GN=Tbc1d22a PE=1 SV=3 | 111 | 578 | 2.0E-106 |
| sp|Q95KI1|TB22A_MACFA | TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis GN=TBC1D22A PE=2 SV=2 | 248 | 578 | 2.0E-106 |
| sp|Q08484|GYP1_YEAST | GTPase-activating protein GYP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP1 PE=1 SV=1 | 238 | 508 | 2.0E-88 |
| sp|Q08484|GYP1_YEAST | GTPase-activating protein GYP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP1 PE=1 SV=1 | 509 | 576 | 6.0E-23 |
| sp|Q9NVG8|TBC13_HUMAN | TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3 | 356 | 547 | 1.0E-21 |
| sp|Q8R3D1|TBC13_MOUSE | TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=1 SV=1 | 356 | 547 | 2.0E-21 |
| sp|Q9CXF4|TBC15_MOUSE | TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 | 274 | 563 | 6.0E-17 |
| sp|Q8TC07|TBC15_HUMAN | TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 | 274 | 563 | 1.0E-16 |
| sp|Q8TBP0|TBC16_HUMAN | TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1 | 268 | 544 | 1.0E-15 |
| sp|Q9URY3|YLOH_SCHPO | TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=3 SV=4 | 365 | 573 | 8.0E-15 |
| sp|Q8BM85|TBCK_MOUSE | TBC domain-containing protein kinase-like protein OS=Mus musculus GN=Tbck PE=1 SV=1 | 246 | 585 | 2.0E-11 |
| sp|Q6FWI1|GYP7_CANGA | GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 | 340 | 549 | 2.0E-11 |
| sp|Q9UUH7|GYP7_SCHPO | GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 | 274 | 567 | 2.0E-11 |
| sp|Q8TEA7|TBCK_HUMAN | TBC domain-containing protein kinase-like protein OS=Homo sapiens GN=TBCK PE=1 SV=4 | 340 | 566 | 5.0E-11 |
| sp|Q5F361|TBCK_CHICK | TBC domain-containing protein kinase-like protein OS=Gallus gallus GN=TBCK PE=2 SV=2 | 340 | 564 | 6.0E-11 |
| sp|P48365|GYP7_YEAST | GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP7 PE=1 SV=1 | 364 | 549 | 2.0E-10 |
| sp|Q8BYH7|TBC17_MOUSE | TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=1 SV=2 | 263 | 553 | 2.0E-09 |
| sp|Q3U0J8|TBD2B_MOUSE | TBC1 domain family member 2B OS=Mus musculus GN=Tbc1d2b PE=1 SV=2 | 251 | 564 | 2.0E-09 |
| sp|Q80XC3|US6NL_MOUSE | USP6 N-terminal-like protein OS=Mus musculus GN=Usp6nl PE=1 SV=2 | 272 | 555 | 4.0E-09 |
| sp|Q92738|US6NL_HUMAN | USP6 N-terminal-like protein OS=Homo sapiens GN=USP6NL PE=1 SV=3 | 246 | 555 | 5.0E-09 |
| sp|Q80XQ2|TBCD5_MOUSE | TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2 | 280 | 590 | 5.0E-09 |
| sp|Q28CB1|TBD2B_XENTR | TBC1 domain family member 2B OS=Xenopus tropicalis GN=tbc1d2b PE=2 SV=1 | 239 | 565 | 1.0E-08 |
| sp|P09379|GYP7_YARLI | GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 | 379 | 546 | 2.0E-08 |
| sp|Q9HA65|TBC17_HUMAN | TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 | 264 | 553 | 6.0E-08 |
| sp|B1AVH7|TBD2A_MOUSE | TBC1 domain family member 2A OS=Mus musculus GN=Tbc1d2 PE=2 SV=1 | 266 | 564 | 2.0E-07 |
| sp|B5DFA1|TBD2A_RAT | TBC1 domain family member 2A OS=Rattus norvegicus GN=Tbc1d2 PE=2 SV=1 | 266 | 564 | 3.0E-07 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Nuclear export signal | 0.5487 | 0.4571 | 0.0259 | 0.0939 | 0.0791 | 0.0081 | 0.0734 | 0.3245 | 0.5043 | 0.2584 |
| Orthofinder run ID | 4 |
| Orthogroup | 1743 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7950 MWSSSGSGKKPAQSEMIQVDRSDSASPFWRPPARDNAARRGASTSSSRDSNIVVGAAYSHADMLKFDSLNVSGPS RPKTPPFSSNAAKIRVHEASPPPRNSATGSSPPFKSYINFLSNTNDDWKTDEDEMLGYEDDDGDDFGLPSLSNMK RRSKRMATQAKPDADRLSPALDGSFGRPVRRHSNSADIAVERPMPSYPMPKKSEGKILRPQYKEILRDPANALHL ISYPSVPPNAAPKEADAINSKITRINKFKKLLQASAISLPDLRALAWSGVPEEVRAMTWQLLLSYLPTNSERRVA TLQRKRKEYLDGVRQAFERAGGGAGAAGKARGLDEAIWHQISIDIPRTNPHIELYGYEATQRSLERILYLWAVRH PASGYVQGINDLVTPFWQVFLALYIGDHNIETGMDPGQLPKSVLDAVEADSFWCLTKLLDGIQDHYIVAQPGIQR QVGSLRDLTARIDAGLSRHLEHEGVEFIQFSFRWMNCLLMREISVQNTIRMWDTYLAEEQGFSEFHLYVCAALLV KWSDKLVKMDFQEIMMFLQSLPTKTWTEKDIELLLSEAFIWQSLYKGSAAHLKSQSRRPAPTNLQL |
| Coding | >Ophio5|7950 ATGTGGTCGTCTTCGGGCTCAGGCAAGAAGCCGGCCCAGTCGGAGATGATCCAGGTCGATCGATCCGACTCTGCC TCGCCCTTCTGGAGGCCGCCGGCGCGCGACAATGCAGCAAGGCGAGGCGCATCGACCTCGTCATCACGCGACTCC AATATCGTTGTCGGCGCCGCCTATTCGCACGCCGATATGCTCAAGTTCGACTCCTTAAACGTGTCCGGTCCCTCG CGCCCCAAGACACCACCGTTTTCGTCCAACGCGGCCAAGATCCGCGTTCACGAAGCCTCGCCGCCACCGCGCAAT TCGGCCACCGGCAGCTCGCCACCTTTCAAGAGCTACATTAACTTTTTGTCCAACACCAATGACGATTGGAAGACG GATGAAGACGAAATGCTAGGCTACGAGGACGACGATGGCGACGATTTCGGCCTGCCCAGCCTCTCCAACATGAAA CGGAGATCGAAGAGGATGGCGACGCAAGCCAAGCCTGACGCCGACCGCCTCTCCCCCGCTCTTGACGGCTCCTTT GGCCGGCCGGTTAGACGTCACTCCAACAGCGCTGATATCGCCGTCGAGCGTCCGATGCCTTCTTATCCCATGCCT AAGAAGAGCGAGGGGAAGATTCTTCGGCCGCAGTACAAGGAGATCTTGAGAGATCCCGCCAATGCCTTGCACCTC ATCAGCTACCCCTCCGTCCCGCCCAACGCTGCCCCTAAGGAAGCAGACGCCATAAACTCCAAAATCACCCGAATC AACAAATTCAAGAAGCTGCTGCAGGCATCCGCCATCTCCCTTCCGGACCTGCGGGCCCTCGCATGGTCCGGGGTG CCGGAAGAAGTGCGCGCCATGACCTGGCAGCTTCTTCTGAGCTACCTCCCCACCAACAGCGAAAGGAGAGTGGCG ACGCTGCAGCGGAAGCGCAAGGAATACCTGGACGGGGTGCGGCAGGCCTTTGAGCGGGCCGGCGGCGGCGCTGGA GCGGCAGGCAAGGCCCGGGGCCTGGACGAGGCCATCTGGCATCAGATCAGCATCGACATCCCCCGCACGAACCCG CACATCGAGCTGTACGGCTACGAGGCCACGCAGAGGTCGCTCGAGCGCATCCTCTACCTCTGGGCCGTCAGGCAC CCGGCCAGCGGCTACGTCCAGGGCATCAATGACCTGGTGACGCCCTTTTGGCAGGTCTTCCTCGCCCTCTACATC GGGGACCACAACATCGAGACCGGCATGGACCCCGGCCAGCTTCCCAAGTCGGTGCTGGACGCCGTCGAGGCCGAC TCCTTTTGGTGCCTGACCAAGCTGCTCGACGGCATCCAGGACCACTACATTGTTGCCCAGCCCGGCATCCAGCGT CAGGTCGGCTCCCTGCGCGATCTGACGGCCCGCATCGACGCCGGCCTGTCGAGACACCTGGAACACGAGGGCGTC GAGTTTATACAGTTCAGCTTCCGCTGGATGAACTGCCTCCTCATGCGCGAGATTAGCGTACAGAACACGATCCGC ATGTGGGACACCTACCTGGCCGAAGAGCAGGGTTTCTCCGAGTTCCATCTCTACGTCTGCGCCGCCCTACTGGTG AAATGGTCGGACAAGCTGGTCAAGATGGACTTTCAGGAAATCATGATGTTCCTTCAGAGCCTGCCGACAAAGACG TGGACCGAAAAGGATATCGAGTTGCTCCTCAGCGAGGCCTTCATCTGGCAGAGCCTCTACAAGGGCTCCGCCGCC CATCTCAAGAGTCAGTCCCGGCGACCGGCCCCGACCAACTTGCAGCTG |
| Transcript | >Ophio5|7950 ATGTGGTCGTCTTCGGGCTCAGGCAAGAAGCCGGCCCAGTCGGAGATGATCCAGGTCGATCGATCCGACTCTGCC TCGCCCTTCTGGAGGCCGCCGGCGCGCGACAATGCAGCAAGGCGAGGCGCATCGACCTCGTCATCACGCGACTCC AATATCGTTGTCGGCGCCGCCTATTCGCACGCCGATATGCTCAAGTTCGACTCCTTAAACGTGTCCGGTCCCTCG CGCCCCAAGACACCACCGTTTTCGTCCAACGCGGCCAAGATCCGCGTTCACGAAGCCTCGCCGCCACCGCGCAAT TCGGCCACCGGCAGCTCGCCACCTTTCAAGAGCTACATTAACTTTTTGTCCAACACCAATGACGATTGGAAGACG GATGAAGACGAAATGCTAGGCTACGAGGACGACGATGGCGACGATTTCGGCCTGCCCAGCCTCTCCAACATGAAA CGGAGATCGAAGAGGATGGCGACGCAAGCCAAGCCTGACGCCGACCGCCTCTCCCCCGCTCTTGACGGCTCCTTT GGCCGGCCGGTTAGACGTCACTCCAACAGCGCTGATATCGCCGTCGAGCGTCCGATGCCTTCTTATCCCATGCCT AAGAAGAGCGAGGGGAAGATTCTTCGGCCGCAGTACAAGGAGATCTTGAGAGATCCCGCCAATGCCTTGCACCTC ATCAGCTACCCCTCCGTCCCGCCCAACGCTGCCCCTAAGGAAGCAGACGCCATAAACTCCAAAATCACCCGAATC AACAAATTCAAGAAGCTGCTGCAGGCATCCGCCATCTCCCTTCCGGACCTGCGGGCCCTCGCATGGTCCGGGGTG CCGGAAGAAGTGCGCGCCATGACCTGGCAGCTTCTTCTGAGCTACCTCCCCACCAACAGCGAAAGGAGAGTGGCG ACGCTGCAGCGGAAGCGCAAGGAATACCTGGACGGGGTGCGGCAGGCCTTTGAGCGGGCCGGCGGCGGCGCTGGA GCGGCAGGCAAGGCCCGGGGCCTGGACGAGGCCATCTGGCATCAGATCAGCATCGACATCCCCCGCACGAACCCG CACATCGAGCTGTACGGCTACGAGGCCACGCAGAGGTCGCTCGAGCGCATCCTCTACCTCTGGGCCGTCAGGCAC CCGGCCAGCGGCTACGTCCAGGGCATCAATGACCTGGTGACGCCCTTTTGGCAGGTCTTCCTCGCCCTCTACATC GGGGACCACAACATCGAGACCGGCATGGACCCCGGCCAGCTTCCCAAGTCGGTGCTGGACGCCGTCGAGGCCGAC TCCTTTTGGTGCCTGACCAAGCTGCTCGACGGCATCCAGGACCACTACATTGTTGCCCAGCCCGGCATCCAGCGT CAGGTCGGCTCCCTGCGCGATCTGACGGCCCGCATCGACGCCGGCCTGTCGAGACACCTGGAACACGAGGGCGTC GAGTTTATACAGTTCAGCTTCCGCTGGATGAACTGCCTCCTCATGCGCGAGATTAGCGTACAGAACACGATCCGC ATGTGGGACACCTACCTGGCCGAAGAGCAGGGTTTCTCCGAGTTCCATCTCTACGTCTGCGCCGCCCTACTGGTG AAATGGTCGGACAAGCTGGTCAAGATGGACTTTCAGGAAATCATGATGTTCCTTCAGAGCCTGCCGACAAAGACG TGGACCGAAAAGGATATCGAGTTGCTCCTCAGCGAGGCCTTCATCTGGCAGAGCCTCTACAAGGGCTCCGCCGCC CATCTCAAGAGTCAGTCCCGGCGACCGGCCCCGACCAACTTGCAGCTGTGA |
| Gene | >Ophio5|7950 ATGTGGTCGTCTTCGGGCTCAGGCAAGAAGCCGGCCCAGTCGGTGAGTGGGAGCGCCCGCACATGAGTTGTTCGG TTTGCTGACGCCTCGAGTTGCCGCAGGAGATGATCCAGGTCGGTACGTCGAAACGCCTCTTTCTCTCTGTGCCAT CGTCGCCCTGGCTAACTGCGTTTATAGATCGATCCGAGTATGGCGCATCTCTCGTCCGGAGTCGGCCGTTGCTGA TCATCTTTCCTCTCAAGCTCTGCCTCGCCCTTCTGGAGGCCGCCGGCGCGCGACAATGCAGCAAGGCGAGGCGCA TCGACCTCGTCATCACGCGACTCCAATATCGTTGTCGGCGCCGCCTATTCGCACGCCGATATGCTCAAGTTCGAC TCCTTGTACGTCGTCCCTCGATCATACCCACCCACCTCCTCCCTTCTCACTACCCGTTGGCCAACCCGTATCCAT CCACTCGTCCATCAGAAACGTGTCCGGTCCCTCGCGCCCCAAGACACCACCGTTTTCGTCCAACGCGGCCAAGAT CCGCGTTCACGAAGCCTCGCCGCCACCGCGCAATTCGGCCACCGGCAGCTCGCCACCTTTCAAGAGCTACATTAA CTTTTTGTCCAACACCAATGACGATTGGAAGACGGATGAAGACGAAATGCTAGGCTACGAGGACGACGATGGCGA CGATTTCGGCCTGCCCAGCCTCTCCAACATGAAACGGAGATCGAAGAGGATGGCGACGCAAGCCAAGCCTGACGC CGACCGCCTCTCCCCCGCTCTTGACGGCTCCTTTGGCCGGCCGGTTAGACGTCACTCCAACAGCGCTGATATCGC CGTCGAGCGTCCGATGCCTTCTTATCCCATGCCTAAGAAGAGCGAGGGGAAGATTCTTCGGCCGCAGTACAAGGA GATCTTGAGAGGTTCGTGTGCGAAGACGACTGTCTTGCCCCGACGGCTACTGACCTTTCCACCCACCCCCCAAAG ATCCCGCCAATGCCTTGCACCTCATCAGCTACCCCTCCGTCCCGCCCAACGCTGCCCCTAAGGAAGCAGACGCCA TAAACTCCAAAATCACCCGAATCAACAAATTCAAGAAGCTGCTGCAGGCATCCGCCATCTCCCTTCCGGACCTGC GGGCCCTCGCATGGTCCGGGGTGCCGGAAGAAGTGCGCGCCATGACCTGGCAGCTTCTTCTGAGCTACCTCCCCA CCAACAGCGAAAGGAGAGTGGCGACGCTGCAGCGGAAGCGCAAGGAATACCTGGACGGGGTGCGGCAGGCCTTTG AGCGGGCCGGCGGCGGCGCTGGAGCGGCAGGCAAGGCCCGGGGCCTGGACGAGGCCATCTGGCATCAGATCAGCA TCGACATCCCCCGCACGAACCCGCACATCGAGCTGTACGGCTACGAGGCCACGCAGAGGTCGCTCGAGCGCATCC TCTACCTCTGGGCCGTCAGGCACCCGGCCAGCGGCTACGTCCAGGGCATCAATGACCTGGTGACGCCCTTTTGGC AGGTCTTCCTCGCCCTCTACATCGGGGACCACAACATCGAGACCGGCATGGACCCCGGCCAGCTTCCCAAGTCGG TGCTGGACGCCGTCGAGGCCGACTCCTTTTGGTGCCTGACCAAGCTGCTCGACGGCATCCAGGACCACTACATTG TTGCCCAGCCCGGCATCCAGCGTCAGGTCGGCTCCCTGCGCGATCTGACGGCCCGCATCGACGCCGGCCTGTCGA GACACCTGGAACACGAGGGCGTCGAGTTTATACAGTTCAGCTTCCGCTGGATGAACTGCCTCCTCATGCGCGAGA TTAGCGTACAGAACACGATCCGCATGTGGGACACCTACCTGGTCAGCCTTTCCTTTTCCTTTTTCCTTTCTTCTT TTTTTCCTTTCTCCTTTTTTTCTTTTTTTTTCGGTCATCTTCTTCTCTCTTCCCCCCCCCCCCTTTATCCGTTGT CTTTTACTTACGAACCCCCCTTCTCTCCTTCTCTGTCCCCTTGCAGGCCGAAGAGCAGGGTTTCTCCGAGTTCCA TCTCTACGTCTGCGCCGCCCTACTGGTGAAATGGTCGGACAAGCTGGTCAAGATGGACTTTCAGGAAATCATGAT GTTCCTTCAGAGCCTGCCGACAAAGACGTGGACCGAAAAGGATATCGAGTTGCTCCTCAGCGAGGCCTTCATCTG GCAGAGCCTCTACAAGGGCTCCGCCGCCCATCTCAAGAGTCAGTCCCGGCGACCGGCCCCGACCAACTTGCAGCT GTGA |