© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7940 |
| Gene name | |
| Location | scaffold_820:4327..5388 |
| Strand | - |
| Gene length (bp) | 1061 |
| Transcript length (bp) | 981 |
| Coding sequence length (bp) | 978 |
| Protein length (aa) | 326 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00583 | Acetyltransf_1 | Acetyltransferase (GNAT) family | 2.0E-05 | 182 | 275 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008080 | N-acetyltransferase activity | Yes |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | No |
| GO:0016746 | acyltransferase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0016740 | transferase activity | No |
| GO:0016410 | N-acyltransferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016407 | acetyltransferase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 119 | 141 | 22 |
| 2 | 151 | 168 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 3.40 | 0.55 | 6.25 |
| CcL | In ants, during behavior modification | 6.07 | 1.18 | 10.96 |
| CcD | In ants, recently dead | 8.11 | 2.34 | 13.89 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.182224 | no |
| SC16a | CcD | 0.026744 | yes |
| CcL | CcD | 0.504786 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7940 MEPAVRQLDLSKCGPGLVVDRVGVAPGLRSSTAFFTFLRANLVLTPSALSSNSSSPHAEPVSPQPWCPPSPSLAP ILAPTGDIPPISLDALTTESDRDEGLSLVARSVAQMDLRAARALAFHPLSLALLVAVWAVVLRLAFTPGASPGRT VLLSAALAAAYLSVIRLYTRGYGPLARTIDRHWLQPDGDHVVVVGARRGHSLVGALVLRLECKGALVSSSLRRRN RNRSTSLRGGKGVIRAWTTRADHRGRGIGRDLLAAAVRITKDRCGKDAQLGFAKDHANSAVLLPGRFAAPFRRAE MQAARALEAAEEEWELSRKKKKVANF |
| Coding | >Ophio5|7940 ATGGAGCCCGCCGTGCGTCAGCTGGATCTGAGCAAGTGCGGGCCCGGCCTCGTCGTCGACCGAGTCGGCGTCGCC CCAGGCCTGAGGTCCAGCACCGCCTTCTTCACCTTTCTGCGCGCCAACCTCGTCCTTACTCCCTCAGCCCTCTCC TCCAACAGCAGCAGCCCCCATGCCGAGCCCGTCTCGCCTCAGCCCTGGTGCCCACCTTCACCGTCCCTGGCCCCC ATCCTCGCGCCTACAGGAGACATACCACCCATCTCGCTCGACGCCCTGACGACCGAGAGCGATCGAGATGAGGGC CTGAGTCTCGTTGCCCGCTCCGTTGCCCAGATGGACCTCCGCGCCGCTCGCGCCCTTGCTTTCCACCCCCTGAGC CTCGCCCTCCTCGTCGCCGTCTGGGCCGTCGTCCTGCGCCTCGCCTTTACGCCAGGAGCCAGCCCCGGCCGGACC GTTCTTCTCTCCGCTGCCCTTGCCGCTGCCTATCTCTCCGTCATCCGCCTCTACACCCGCGGTTACGGCCCCCTC GCACGCACCATCGACCGCCACTGGCTGCAGCCCGACGGCGATCACGTCGTCGTCGTCGGCGCCCGCCGGGGCCAC TCCCTCGTTGGCGCTCTCGTCCTCCGCCTCGAGTGCAAAGGCGCCCTTGTGTCTTCCTCTCTGCGGCGTAGGAAT CGCAACCGCAGCACAAGCCTCCGCGGCGGCAAGGGCGTCATCCGTGCATGGACTACCCGCGCAGACCACCGCGGC CGCGGTATCGGCAGGGACCTGTTGGCCGCTGCCGTCAGAATCACCAAGGACAGGTGCGGAAAGGATGCCCAGCTC GGCTTCGCCAAGGATCATGCCAACAGCGCCGTCCTGCTACCGGGCCGCTTTGCCGCGCCCTTTCGTAGGGCCGAG ATGCAGGCCGCCAGGGCGCTGGAGGCGGCCGAGGAGGAATGGGAGCTTAGCAGGAAGAAGAAAAAAGTGGCCAAT TTT |
| Transcript | >Ophio5|7940 ATGGAGCCCGCCGTGCGTCAGCTGGATCTGAGCAAGTGCGGGCCCGGCCTCGTCGTCGACCGAGTCGGCGTCGCC CCAGGCCTGAGGTCCAGCACCGCCTTCTTCACCTTTCTGCGCGCCAACCTCGTCCTTACTCCCTCAGCCCTCTCC TCCAACAGCAGCAGCCCCCATGCCGAGCCCGTCTCGCCTCAGCCCTGGTGCCCACCTTCACCGTCCCTGGCCCCC ATCCTCGCGCCTACAGGAGACATACCACCCATCTCGCTCGACGCCCTGACGACCGAGAGCGATCGAGATGAGGGC CTGAGTCTCGTTGCCCGCTCCGTTGCCCAGATGGACCTCCGCGCCGCTCGCGCCCTTGCTTTCCACCCCCTGAGC CTCGCCCTCCTCGTCGCCGTCTGGGCCGTCGTCCTGCGCCTCGCCTTTACGCCAGGAGCCAGCCCCGGCCGGACC GTTCTTCTCTCCGCTGCCCTTGCCGCTGCCTATCTCTCCGTCATCCGCCTCTACACCCGCGGTTACGGCCCCCTC GCACGCACCATCGACCGCCACTGGCTGCAGCCCGACGGCGATCACGTCGTCGTCGTCGGCGCCCGCCGGGGCCAC TCCCTCGTTGGCGCTCTCGTCCTCCGCCTCGAGTGCAAAGGCGCCCTTGTGTCTTCCTCTCTGCGGCGTAGGAAT CGCAACCGCAGCACAAGCCTCCGCGGCGGCAAGGGCGTCATCCGTGCATGGACTACCCGCGCAGACCACCGCGGC CGCGGTATCGGCAGGGACCTGTTGGCCGCTGCCGTCAGAATCACCAAGGACAGGTGCGGAAAGGATGCCCAGCTC GGCTTCGCCAAGGATCATGCCAACAGCGCCGTCCTGCTACCGGGCCGCTTTGCCGCGCCCTTTCGTAGGGCCGAG ATGCAGGCCGCCAGGGCGCTGGAGGCGGCCGAGGAGGAATGGGAGCTTAGCAGGAAGAAGAAAAAAGTGGCCAAT TTTTAG |
| Gene | >Ophio5|7940 ATGGAGCCCGCCGTGCGTCAGCTGGATCTGAGCAAGTGCGGGCCCGGCCTCGTCGTCGACCGAGTCGGCGTCGCC CCAGGCCTGAGGTCCAGCACCGGTCCGCCTCTCCCTCCTCTTCTCCTCAGCCCCCCCCTCAACCCCCCCCCCCCC AAAAAAAAATCTGACGCCCGTAAGCAGCCTTCTTCACCTTTCTGCGCGCCAACCTCGTCCTTACTCCCTCAGCCC TCTCCTCCAACAGCAGCAGCCCCCATGCCGAGCCCGTCTCGCCTCAGCCCTGGTGCCCACCTTCACCGTCCCTGG CCCCCATCCTCGCGCCTACAGGAGACATACCACCCATCTCGCTCGACGCCCTGACGACCGAGAGCGATCGAGATG AGGGCCTGAGTCTCGTTGCCCGCTCCGTTGCCCAGATGGACCTCCGCGCCGCTCGCGCCCTTGCTTTCCACCCCC TGAGCCTCGCCCTCCTCGTCGCCGTCTGGGCCGTCGTCCTGCGCCTCGCCTTTACGCCAGGAGCCAGCCCCGGCC GGACCGTTCTTCTCTCCGCTGCCCTTGCCGCTGCCTATCTCTCCGTCATCCGCCTCTACACCCGCGGTTACGGCC CCCTCGCACGCACCATCGACCGCCACTGGCTGCAGCCCGACGGCGATCACGTCGTCGTCGTCGGCGCCCGCCGGG GCCACTCCCTCGTTGGCGCTCTCGTCCTCCGCCTCGAGTGCAAAGGCGCCCTTGTGTCTTCCTCTCTGCGGCGTA GGAATCGCAACCGCAGCACAAGCCTCCGCGGCGGCAAGGGCGTCATCCGTGCATGGACTACCCGCGCAGACCACC GCGGCCGCGGTATCGGCAGGGACCTGTTGGCCGCTGCCGTCAGAATCACCAAGGACAGGTGCGGAAAGGATGCCC AGCTCGGCTTCGCCAAGGATCATGCCAACAGCGCCGTCCTGCTACCGGGCCGCTTTGCCGCGCCCTTTCGTAGGG CCGAGATGCAGGCCGCCAGGGCGCTGGAGGCGGCCGAGGAGGAATGGGAGCTTAGCAGGAAGAAGAAAAAAGTGG CCAATTTTTAG |