© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7938 |
| Gene name | |
| Location | scaffold_820:2645..2959 |
| Strand | + |
| Gene length (bp) | 314 |
| Transcript length (bp) | 249 |
| Coding sequence length (bp) | 246 |
| Protein length (aa) | 82 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | 0.3743 | 0.6035 | 0.1469 | 0.1326 | 0.2903 | 0.0137 | 0.0804 | 0.0846 | 0.0407 | 0.0166 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 29 | 51 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 64.92 | 18.24 | 111.59 |
| CcL | In ants, during behavior modification | 126.95 | 45.72 | 208.18 |
| CcD | In ants, recently dead | 88.34 | 28.48 | 148.21 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.042405 | yes |
| SC16a | CcD | 0.401517 | no |
| CcL | CcD | 0.277118 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 16378 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps kimflemingae | Ophio5|7938 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7938 MDNDDLSDGWRRKVWRGLAMETGERNSCLYIHGLTACGLHLALGPGRWRLIDKRRGSEKYQERCLKERTTRLRTR LVNEADS |
| Coding | >Ophio5|7938 ATGGACAATGACGACTTGAGCGACGGCTGGAGACGGAAAGTCTGGCGAGGCTTGGCCATGGAGACTGGGGAGAGG AACTCGTGCCTGTACATACATGGCCTGACGGCTTGCGGTCTTCACCTTGCTCTTGGCCCAGGGCGTTGGCGGCTG ATCGACAAACGACGAGGAAGCGAGAAATATCAGGAGCGTTGCCTGAAGGAGAGGACGACAAGGCTGCGAACGAGG CTAGTGAACGAGGCTGACAGC |
| Transcript | >Ophio5|7938 ATGGACAATGACGACTTGAGCGACGGCTGGAGACGGAAAGTCTGGCGAGGCTTGGCCATGGAGACTGGGGAGAGG AACTCGTGCCTGTACATACATGGCCTGACGGCTTGCGGTCTTCACCTTGCTCTTGGCCCAGGGCGTTGGCGGCTG ATCGACAAACGACGAGGAAGCGAGAAATATCAGGAGCGTTGCCTGAAGGAGAGGACGACAAGGCTGCGAACGAGG CTAGTGAACGAGGCTGACAGCTAG |
| Gene | >Ophio5|7938 ATGGACAATGACGACTTGAGCGACGGCTGGAGACGGAAAGTCTGGCGAGGCTTGGCCATGGAGACTGGGGAGAGG AACTCGTGCCTGTACATACATGGCCTGACGGCTTGCGGTCTTCACCTTGCTCTTGGCCCAGGGCGTTGGCGGCTG ATCGACAAACGACGAGGAAGCGAGAAATATCAGGAGCGTTGCCTGAAGGAGAGGACGTATGACTTTTCCCCAATG CCCTGCATCGGTGCTTGTAGATATGCGATGTTGACGCCTACCACAGGACAAGGCTGCGAACGAGGCTAGTGAACG AGGCTGACAGCTAG |