© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7932 |
| Gene name | |
| Location | scaffold_82:41464..41991 |
| Strand | + |
| Gene length (bp) | 527 |
| Transcript length (bp) | 408 |
| Coding sequence length (bp) | 405 |
| Protein length (aa) | 135 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 26 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 0.00 | 0.0 | 0.00 |
| CcL | In ants, during behavior modification | 73.56 | 29.8 | 117.32 |
| CcD | In ants, recently dead | 0.92 | 0.0 | 2.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 1.000000 | no |
| CcL | CcD | 0.042628 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7932 MRLSVVIATLLTITVVRATALYCFGMKMVNNFTNLISFSNSIGLGNFISLDNSIALGNPISFSNSITLGNPHNLT NFISLGNPIGLGEPHNLNNFINLSSPHSLGNFIRQTFHVPTAPSSVHSEARVTSTARTRP |
| Coding | >Ophio5|7932 ATGAGGCTTTCCGTCGTCATCGCTACTCTTCTCACAATAACGGTAGTCAGAGCCACAGCTCTGTACTGCTTCGGC ATGAAGATGGTCAACAATTTCACCAACCTCATCAGCTTCAGCAACTCCATTGGTCTCGGCAACTTCATCAGCCTC GACAACTCCATCGCTCTCGGCAACCCCATCAGCTTCAGCAACTCCATCACTCTCGGTAACCCACACAATCTCACC AACTTCATCAGCCTCGGCAACCCCATCGGTCTCGGCGAGCCCCACAATCTCAACAACTTCATCAACCTCAGCAGC CCCCACAGTCTCGGAAACTTCATCCGTCAAACCTTTCATGTACCGACCGCTCCCTCCTCCGTTCATTCCGAGGCT AGGGTGACTTCCACGGCACGAACACGGCCG |
| Transcript | >Ophio5|7932 ATGAGGCTTTCCGTCGTCATCGCTACTCTTCTCACAATAACGGTAGTCAGAGCCACAGCTCTGTACTGCTTCGGC ATGAAGATGGTCAACAATTTCACCAACCTCATCAGCTTCAGCAACTCCATTGGTCTCGGCAACTTCATCAGCCTC GACAACTCCATCGCTCTCGGCAACCCCATCAGCTTCAGCAACTCCATCACTCTCGGTAACCCACACAATCTCACC AACTTCATCAGCCTCGGCAACCCCATCGGTCTCGGCGAGCCCCACAATCTCAACAACTTCATCAACCTCAGCAGC CCCCACAGTCTCGGAAACTTCATCCGTCAAACCTTTCATGTACCGACCGCTCCCTCCTCCGTTCATTCCGAGGCT AGGGTGACTTCCACGGCACGAACACGGCCGTAG |
| Gene | >Ophio5|7932 ATGAGGCTTTCCGTCGTCATCGCTACTCTTCTCACAATAACGGTAGTCAGAGCCACAGCTCTGTACTGCTTCGGC ATGAAGATGGTCAAGTGCGAGAGATCAAGAATCTTGCTAGCTGCATCAAAAAATTCATCGATCTTGACAATTTCT TCAGCAATTTCACCAACCTCATCAGCTTCAGCAACTCCATTGGTCTCGGCAACTTCATCAGCCTCGACAACTCCA TCGCTCTCGGCAACCCCATCAGCTTCAGCAACTCCATCACTCTCGGTAACCCACACAATCTCACCAACTTCATCA GCCTCGGCAACCCCATCGGTCTCGGCGAGCCCCACAATCTCAACAACTTCATCAACCTCAGCAGCCCCCACAGTC TCGGAAACTTCATCCGTCAAACCTTTCAGTGGGTTATCAGCTGCTGGTTGACTTTCCTTTCATCAAGTGCTGATA GAAGCAGTGTACCGACCGCTCCCTCCTCCGTTCATTCCGAGGCTAGGGTGACTTCCACGGCACGAACACGGCCGT AG |