Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7930
Gene name
Locationscaffold_82:37182..38445
Strand+
Gene length (bp)1263
Transcript length (bp)1188
Coding sequence length (bp)1185
Protein length (aa) 395

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.0 0.0 0.0
CcL In ants, during behavior modification 0.0 0.0 0.0
CcD In ants, recently dead 0.0 0.0 0.0

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7930
MVLLLPLILLSSSALASVGRYKPAKAAFCNVPPGNKLIDSFQLYPENASFDPKRCLVYFSVLWNNSVAIWDPVHN
QIVGSLDDPKYTGRTDLHANAVSVDECRDELTTGFTAATAWDTNGRVITGQNNIARYSLSTFQRIWDVDLSNVTH
NKYGGYQDVAQDVQGNIFVAGTYPPSLLRVVPSTRMVDIWYLGPPDSNIAGLQGLVNYQDKKILATYQTQSIEGS
QLVSFNINHPGRPKPIPVKQGNRVTNRVGTILDAAVLPPLYGQKVLLAPDAHAGTVVLYSDDDWNTAHRLGVVPT
LFPGEPNGPSVVSSVQAGQRVFSIYEFFEDGVVKAPGLPKGPGNRNFFPLQDVTDGINRLLLEFLSHGASTESNE
YEGEELEPEEDLDPEEMERY
Coding >Ophio5|7930
ATGGTCCTCCTCCTGCCTCTCATTCTGCTATCTTCTTCTGCACTGGCTTCTGTCGGCCGCTATAAGCCGGCCAAA
GCTGCATTTTGCAACGTACCACCCGGAAACAAGCTCATCGATAGTTTCCAGCTGTATCCGGAGAACGCGTCGTTT
GATCCCAAACGATGTCTCGTATACTTTAGCGTCCTCTGGAACAACTCGGTAGCCATCTGGGATCCCGTGCATAAC
CAAATCGTCGGTAGCTTGGATGACCCTAAATACACGGGCAGGACTGATCTACACGCCAACGCCGTCTCGGTCGAT
GAATGCCGCGACGAACTGACTACTGGGTTCACCGCTGCCACCGCTTGGGATACGAATGGGAGGGTCATCACGGGG
CAGAACAACATTGCTCGATACTCCCTTTCGACTTTCCAGCGCATCTGGGATGTTGACTTGTCCAATGTGACCCAT
AACAAGTACGGAGGCTATCAAGACGTGGCGCAGGACGTACAAGGAAACATCTTTGTTGCCGGCACTTACCCTCCT
AGCCTGCTGCGTGTGGTCCCATCGACGAGGATGGTGGACATATGGTATTTGGGACCGCCTGACTCGAACATTGCT
GGCCTCCAAGGCCTGGTCAATTATCAGGACAAGAAGATCTTGGCCACGTACCAGACACAGAGCATCGAGGGAAGC
CAGCTCGTTTCATTCAACATCAATCATCCAGGAAGGCCGAAACCCATCCCCGTAAAGCAGGGCAACAGAGTCACA
AACCGAGTCGGCACCATCCTGGACGCGGCGGTGCTGCCCCCTCTGTATGGACAAAAGGTTCTTCTTGCCCCTGAC
GCCCACGCGGGCACCGTCGTTCTTTACTCGGATGACGACTGGAACACGGCACATAGGCTTGGCGTTGTTCCCACT
CTCTTCCCCGGGGAGCCCAACGGTCCGTCTGTAGTCTCTTCCGTTCAAGCTGGACAACGCGTCTTCTCCATTTAC
GAATTCTTCGAAGACGGCGTTGTAAAAGCCCCGGGGCTTCCCAAGGGCCCCGGAAACAGGAACTTCTTTCCTCTT
CAGGACGTGACGGACGGCATCAACCGTCTTCTCCTAGAGTTCTTGAGTCACGGTGCATCGACTGAGTCAAATGAA
TATGAAGGAGAGGAACTGGAGCCAGAAGAAGACCTTGACCCAGAAGAAATGGAAAGATAT
Transcript >Ophio5|7930
ATGGTCCTCCTCCTGCCTCTCATTCTGCTATCTTCTTCTGCACTGGCTTCTGTCGGCCGCTATAAGCCGGCCAAA
GCTGCATTTTGCAACGTACCACCCGGAAACAAGCTCATCGATAGTTTCCAGCTGTATCCGGAGAACGCGTCGTTT
GATCCCAAACGATGTCTCGTATACTTTAGCGTCCTCTGGAACAACTCGGTAGCCATCTGGGATCCCGTGCATAAC
CAAATCGTCGGTAGCTTGGATGACCCTAAATACACGGGCAGGACTGATCTACACGCCAACGCCGTCTCGGTCGAT
GAATGCCGCGACGAACTGACTACTGGGTTCACCGCTGCCACCGCTTGGGATACGAATGGGAGGGTCATCACGGGG
CAGAACAACATTGCTCGATACTCCCTTTCGACTTTCCAGCGCATCTGGGATGTTGACTTGTCCAATGTGACCCAT
AACAAGTACGGAGGCTATCAAGACGTGGCGCAGGACGTACAAGGAAACATCTTTGTTGCCGGCACTTACCCTCCT
AGCCTGCTGCGTGTGGTCCCATCGACGAGGATGGTGGACATATGGTATTTGGGACCGCCTGACTCGAACATTGCT
GGCCTCCAAGGCCTGGTCAATTATCAGGACAAGAAGATCTTGGCCACGTACCAGACACAGAGCATCGAGGGAAGC
CAGCTCGTTTCATTCAACATCAATCATCCAGGAAGGCCGAAACCCATCCCCGTAAAGCAGGGCAACAGAGTCACA
AACCGAGTCGGCACCATCCTGGACGCGGCGGTGCTGCCCCCTCTGTATGGACAAAAGGTTCTTCTTGCCCCTGAC
GCCCACGCGGGCACCGTCGTTCTTTACTCGGATGACGACTGGAACACGGCACATAGGCTTGGCGTTGTTCCCACT
CTCTTCCCCGGGGAGCCCAACGGTCCGTCTGTAGTCTCTTCCGTTCAAGCTGGACAACGCGTCTTCTCCATTTAC
GAATTCTTCGAAGACGGCGTTGTAAAAGCCCCGGGGCTTCCCAAGGGCCCCGGAAACAGGAACTTCTTTCCTCTT
CAGGACGTGACGGACGGCATCAACCGTCTTCTCCTAGAGTTCTTGAGTCACGGTGCATCGACTGAGTCAAATGAA
TATGAAGGAGAGGAACTGGAGCCAGAAGAAGACCTTGACCCAGAAGAAATGGAAAGATATTGA
Gene >Ophio5|7930
ATGGTCCTCCTCCTGCCTCTCATTCTGCTATCTTCTTCTGCACTGGCTTCTGTCGGCCGCTATAAGCCGGCCAAA
GCTGCATTTTGCAACGTACCACCCGGAAACAAGCTCATCGATAGTTTCCAGCTGTATCCGGAGAACGCGTCGTTT
GATCCCAAACGATGTCTCGTATACTTTAGGTATATTCGATACAGAACTTGACATATTTTCCGTCTACACGGCTAA
TGACGGCACTTGGTGGCCTTTTCATCTAGCGTCCTCTGGAACAACTCGGTAGCCATCTGGGATCCCGTGCATAAC
CAAATCGTCGGTAGCTTGGATGACCCTAAATACACGGGCAGGACTGATCTACACGCCAACGCCGTCTCGGTCGAT
GAATGCCGCGACGAACTGACTACTGGGTTCACCGCTGCCACCGCTTGGGATACGAATGGGAGGGTCATCACGGGG
CAGAACAACATTGCTCGATACTCCCTTTCGACTTTCCAGCGCATCTGGGATGTTGACTTGTCCAATGTGACCCAT
AACAAGTACGGAGGCTATCAAGACGTGGCGCAGGACGTACAAGGAAACATCTTTGTTGCCGGCACTTACCCTCCT
AGCCTGCTGCGTGTGGTCCCATCGACGAGGATGGTGGACATATGGTATTTGGGACCGCCTGACTCGAACATTGCT
GGCCTCCAAGGCCTGGTCAATTATCAGGACAAGAAGATCTTGGCCACGTACCAGACACAGAGCATCGAGGGAAGC
CAGCTCGTTTCATTCAACATCAATCATCCAGGAAGGCCGAAACCCATCCCCGTAAAGCAGGGCAACAGAGTCACA
AACCGAGTCGGCACCATCCTGGACGCGGCGGTGCTGCCCCCTCTGTATGGACAAAAGGTTCTTCTTGCCCCTGAC
GCCCACGCGGGCACCGTCGTTCTTTACTCGGATGACGACTGGAACACGGCACATAGGCTTGGCGTTGTTCCCACT
CTCTTCCCCGGGGAGCCCAACGGTCCGTCTGTAGTCTCTTCCGTTCAAGCTGGACAACGCGTCTTCTCCATTTAC
GAATTCTTCGAAGACGGCGTTGTAAAAGCCCCGGGGCTTCCCAAGGGCCCCGGAAACAGGAACTTCTTTCCTCTT
CAGGACGTGACGGACGGCATCAACCGTCTTCTCCTAGAGTTCTTGAGTCACGGTGCATCGACTGAGTCAAATGAA
TATGAAGGAGAGGAACTGGAGCCAGAAGAAGACCTTGACCCAGAAGAAATGGAAAGATATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail