Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7929
Gene name
Locationscaffold_82:35470..36020
Strand+
Gene length (bp)550
Transcript length (bp)363
Coding sequence length (bp)360
Protein length (aa) 120

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.0 0.0 0.0
CcL In ants, during behavior modification 0.0 0.0 0.0
CcD In ants, recently dead 0.0 0.0 0.0

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7929
MHLTKLAVLSFACLAAAEPAEANTQGILFRGRNYQGQARTIFDKQKGQCINLRGSLHEHTASIIVDRPGRDECIL
FEFARLQMLTQPRSLTNCRGRSWSYRNNNPHIRATKVSSVVCFRH
Coding >Ophio5|7929
ATGCACCTCACTAAGCTCGCCGTCCTTTCCTTCGCCTGTCTGGCGGCTGCCGAACCGGCAGAGGCCAATACTCAA
GGCATCTTATTCCGCGGCCGTAACTACCAGGGACAAGCACGCACCATCTTCGACAAGCAGAAGGGGCAATGCATC
AACCTCCGTGGATCACTTCACGAGCACACTGCCTCTATTATAGTCGATCGCCCTGGCCGTGACGAGTGTATCCTC
TTCGAGTTTGCTCGACTTCAGATGCTCACCCAGCCTCGCAGTTTAACGAATTGTCGCGGTCGTTCGTGGTCTTAC
AGAAACAACAACCCTCACATCCGCGCGACTAAAGTGAGCTCTGTCGTCTGCTTCCGACAT
Transcript >Ophio5|7929
ATGCACCTCACTAAGCTCGCCGTCCTTTCCTTCGCCTGTCTGGCGGCTGCCGAACCGGCAGAGGCCAATACTCAA
GGCATCTTATTCCGCGGCCGTAACTACCAGGGACAAGCACGCACCATCTTCGACAAGCAGAAGGGGCAATGCATC
AACCTCCGTGGATCACTTCACGAGCACACTGCCTCTATTATAGTCGATCGCCCTGGCCGTGACGAGTGTATCCTC
TTCGAGTTTGCTCGACTTCAGATGCTCACCCAGCCTCGCAGTTTAACGAATTGTCGCGGTCGTTCGTGGTCTTAC
AGAAACAACAACCCTCACATCCGCGCGACTAAAGTGAGCTCTGTCGTCTGCTTCCGACATTAA
Gene >Ophio5|7929
ATGCACCTCACTAAGCTCGCCGTCCTTTCCTTCGCCTGTCTGGCGGCTGCCGAACCGGCAGAGGCCAATACTCAA
GTGAGGGAACCGTTTATGGTATCGTTGACCTCCCCATGGAGAAACTCTCGTCCTTTTGGCTACCGCGTATCTAAG
ATCCATATTTCTGATTTCGGTAGGGCATCTTATTCCGCGGCCGTAACTACCAGGGACAAGCACGCACCATCTTCG
ACAAGCAGAAGGGGCAATGCATCAACCTCCGTGGATCACTGTCAGTCTGCGTAGCCTTGGGCGACGATGCGCGTC
ATACTGACCCCATGCAGTCACGAGCACACTGCCTCTATTATAGTCGATCGCCCTGGCCGTGACGAGTGTATCCTC
TTCGAGTAAGTATTGGCTGCCTGTTCTGGCTATGGTGTCTAGGTTTGCTCGACTTCAGATGCTCACCCAGCCTCG
CAGTTTAACGAATTGTCGCGGTCGTTCGTGGTCTTACAGAAACAACAACCCTCACATCCGCGCGACTAAAGTGAG
CTCTGTCGTCTGCTTCCGACATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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