© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7909 |
| Gene name | |
| Location | scaffold_818:103..847 |
| Strand | - |
| Gene length (bp) | 744 |
| Transcript length (bp) | 666 |
| Coding sequence length (bp) | 663 |
| Protein length (aa) | 221 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03721 | UDPG_MGDP_dh_N | UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain | 6.8E-17 | 28 | 91 |
| PF03721 | UDPG_MGDP_dh_N | UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain | 3.8E-17 | 116 | 194 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9AUV6|UGDH3_ORYSJ | UDP-glucose 6-dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=UGD3 PE=2 SV=1 | 28 | 193 | 7.0E-39 |
| sp|Q9FZE1|UGDH1_ARATH | UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=2 SV=1 | 28 | 193 | 1.0E-38 |
| sp|B7F958|UGDH2_ORYSJ | UDP-glucose 6-dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=UGD2 PE=2 SV=1 | 28 | 193 | 3.0E-38 |
| sp|Q2QS13|UGDH5_ORYSJ | UDP-glucose 6-dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=UGD5 PE=2 SV=1 | 28 | 193 | 3.0E-38 |
| sp|Q2QS14|UGDH4_ORYSJ | UDP-glucose 6-dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=UGD4 PE=2 SV=1 | 28 | 193 | 3.0E-38 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9AUV6|UGDH3_ORYSJ | UDP-glucose 6-dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=UGD3 PE=2 SV=1 | 28 | 193 | 7.0E-39 |
| sp|Q9FZE1|UGDH1_ARATH | UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=2 SV=1 | 28 | 193 | 1.0E-38 |
| sp|B7F958|UGDH2_ORYSJ | UDP-glucose 6-dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=UGD2 PE=2 SV=1 | 28 | 193 | 3.0E-38 |
| sp|Q2QS13|UGDH5_ORYSJ | UDP-glucose 6-dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=UGD5 PE=2 SV=1 | 28 | 193 | 3.0E-38 |
| sp|Q2QS14|UGDH4_ORYSJ | UDP-glucose 6-dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=UGD4 PE=2 SV=1 | 28 | 193 | 3.0E-38 |
| sp|Q96558|UGDH1_SOYBN | UDP-glucose 6-dehydrogenase 1 OS=Glycine max GN=UGD1 PE=2 SV=1 | 28 | 193 | 3.0E-37 |
| sp|Q9LF33|UGDH3_ARATH | UDP-glucose 6-dehydrogenase 3 OS=Arabidopsis thaliana GN=UGD3 PE=1 SV=1 | 28 | 193 | 3.0E-37 |
| sp|Q75GS4|UGDH1_ORYSJ | UDP-glucose 6-dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=UGD1 PE=3 SV=1 | 28 | 193 | 6.0E-37 |
| sp|Q9LIA8|UGDH2_ARATH | UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=1 SV=1 | 28 | 193 | 7.0E-37 |
| sp|Q9FM01|UGDH4_ARATH | UDP-glucose 6-dehydrogenase 4 OS=Arabidopsis thaliana GN=UGD4 PE=1 SV=1 | 28 | 193 | 8.0E-37 |
| sp|O02373|UGDH_DROME | UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=1 SV=1 | 28 | 198 | 1.0E-36 |
| sp|Q19905|UGDH_CAEEL | UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1 | 26 | 198 | 9.0E-36 |
| sp|Q5R7B3|UGDH_PONAB | UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1 | 26 | 193 | 2.0E-35 |
| sp|P12378|UGDH_BOVIN | UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2 | 26 | 193 | 3.0E-35 |
| sp|O60701|UGDH_HUMAN | UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1 | 26 | 193 | 3.0E-35 |
| sp|O70475|UGDH_MOUSE | UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1 | 24 | 193 | 4.0E-35 |
| sp|O70199|UGDH_RAT | UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1 | 24 | 193 | 1.0E-34 |
| sp|Q5F3T9|UGDH_CHICK | UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1 | 26 | 193 | 5.0E-34 |
| sp|O86422|UDG_PSEAE | UDP-glucose 6-dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=udg PE=3 SV=2 | 29 | 201 | 6.0E-17 |
| sp|A6VK13|WECC_METM7 | UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=wecC PE=3 SV=1 | 26 | 202 | 2.0E-09 |
| sp|O54068|UDG_RHIME | UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=rkpK PE=3 SV=2 | 28 | 198 | 2.0E-09 |
| sp|A6UU98|WECC_META3 | UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=wecC PE=3 SV=1 | 26 | 197 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051287 | NAD binding | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:1901363 | heterocyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 25 | 47 | 22 |
| 2 | 197 | 219 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 123.22 | 66.22 | 180.22 |
| CcL | In ants, during behavior modification | 51.27 | 22.55 | 79.99 |
| CcD | In ants, recently dead | 46.36 | 20.94 | 71.78 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000997 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.756711 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7909 MASVPEAVVIDSVNGSNGALEDEVAVRSICCVGAGYVGGPTAAVIAFQNPQIKVTVVDRDENRIRRWNSRHAPIY EPGLHDIVRVARDGGRDARFSNEPTSDTEPESTDEADVSVSRRAGNLFFTTDVATSIAQADMVLVAVNTPTKERG IGAGSATDMTAFEAVTAVVAQYAREGAIIVEKSTVPCRTAQLVADTVRFCLFFFFFFFSCWLAIPMSEWNG |
| Coding | >Ophio5|7909 ATGGCGTCAGTGCCAGAAGCCGTCGTCATCGACTCGGTCAACGGTTCGAATGGAGCGCTGGAAGACGAGGTGGCG GTGCGATCCATCTGCTGCGTTGGCGCCGGCTACGTTGGAGGCCCCACGGCAGCCGTCATCGCCTTTCAGAACCCC CAGATCAAGGTGACGGTCGTGGACCGAGACGAGAACCGGATCCGTCGATGGAATTCGCGTCATGCTCCCATCTAC GAACCCGGCCTGCACGACATCGTTCGCGTCGCTCGCGACGGCGGTCGTGATGCCCGATTCTCCAACGAGCCCACG TCGGATACCGAGCCCGAGTCGACGGATGAGGCCGACGTGTCGGTTTCGCGTCGCGCCGGGAACCTCTTCTTCACG ACGGATGTCGCCACCAGCATCGCCCAAGCTGACATGGTTCTCGTCGCCGTGAATACGCCGACTAAAGAGCGCGGC ATCGGTGCTGGAAGCGCTACCGATATGACGGCTTTCGAGGCTGTCACGGCCGTCGTTGCTCAATACGCTCGCGAG GGGGCCATCATTGTCGAGAAGAGCACCGTTCCTTGTCGTACGGCCCAGCTCGTGGCCGACACGGTACGTTTTTGC CTTTTTTTTTTTTTTTTTTTTTTTTCCTGTTGGCTGGCTATCCCCATGTCCGAATGGAATGGC |
| Transcript | >Ophio5|7909 ATGGCGTCAGTGCCAGAAGCCGTCGTCATCGACTCGGTCAACGGTTCGAATGGAGCGCTGGAAGACGAGGTGGCG GTGCGATCCATCTGCTGCGTTGGCGCCGGCTACGTTGGAGGCCCCACGGCAGCCGTCATCGCCTTTCAGAACCCC CAGATCAAGGTGACGGTCGTGGACCGAGACGAGAACCGGATCCGTCGATGGAATTCGCGTCATGCTCCCATCTAC GAACCCGGCCTGCACGACATCGTTCGCGTCGCTCGCGACGGCGGTCGTGATGCCCGATTCTCCAACGAGCCCACG TCGGATACCGAGCCCGAGTCGACGGATGAGGCCGACGTGTCGGTTTCGCGTCGCGCCGGGAACCTCTTCTTCACG ACGGATGTCGCCACCAGCATCGCCCAAGCTGACATGGTTCTCGTCGCCGTGAATACGCCGACTAAAGAGCGCGGC ATCGGTGCTGGAAGCGCTACCGATATGACGGCTTTCGAGGCTGTCACGGCCGTCGTTGCTCAATACGCTCGCGAG GGGGCCATCATTGTCGAGAAGAGCACCGTTCCTTGTCGTACGGCCCAGCTCGTGGCCGACACGGTACGTTTTTGC CTTTTTTTTTTTTTTTTTTTTTTTTCCTGTTGGCTGGCTATCCCCATGTCCGAATGGAATGGCTGA |
| Gene | >Ophio5|7909 ATGGCGTCAGTGCCAGAAGCCGTCGTCATCGACTCGGTCAACGGTTCGAATGGAGCGCTGGAAGACGAGGTGGCG GTGCGATCCATCTGCTGCGTTGGCGCCGGCTACGTTGGTGAGGAGTTGACGCTCTCCAGGGGCTTTCCCACTTCC CCTTCACCGCCCCGCTGAAAGGAAAAAAAAAATACTACAGGAGGCCCCACGGCAGCCGTCATCGCCTTTCAGAAC CCCCAGATCAAGGTGACGGTCGTGGACCGAGACGAGAACCGGATCCGTCGATGGAATTCGCGTCATGCTCCCATC TACGAACCCGGCCTGCACGACATCGTTCGCGTCGCTCGCGACGGCGGTCGTGATGCCCGATTCTCCAACGAGCCC ACGTCGGATACCGAGCCCGAGTCGACGGATGAGGCCGACGTGTCGGTTTCGCGTCGCGCCGGGAACCTCTTCTTC ACGACGGATGTCGCCACCAGCATCGCCCAAGCTGACATGGTTCTCGTCGCCGTGAATACGCCGACTAAAGAGCGC GGCATCGGTGCTGGAAGCGCTACCGATATGACGGCTTTCGAGGCTGTCACGGCCGTCGTTGCTCAATACGCTCGC GAGGGGGCCATCATTGTCGAGAAGAGCACCGTTCCTTGTCGTACGGCCCAGCTCGTGGCCGACACGGTACGTTTT TGCCTTTTTTTTTTTTTTTTTTTTTTTTCCTGTTGGCTGGCTATCCCCATGTCCGAATGGAATGGCTGA |