© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7887 |
| Gene name | |
| Location | scaffold_81:38776..41239 |
| Strand | - |
| Gene length (bp) | 2463 |
| Transcript length (bp) | 2403 |
| Coding sequence length (bp) | 2400 |
| Protein length (aa) | 800 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 9.4E-12 | 563 | 682 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5T9A4|ATD3B_HUMAN | ATPase family AAA domain-containing protein 3B OS=Homo sapiens GN=ATAD3B PE=1 SV=1 | 529 | 704 | 1.0E-11 |
| sp|Q6NVR9|ATAD3_XENTR | ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis GN=atad3 PE=2 SV=1 | 556 | 704 | 3.0E-10 |
| sp|Q58E76|ATD3A_XENLA | ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis GN=atad3-a PE=2 SV=1 | 556 | 704 | 4.0E-10 |
| sp|Q6PAX2|ATD3B_XENLA | ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis GN=atad3-b PE=2 SV=1 | 556 | 704 | 1.0E-09 |
| sp|Q9NVI7|ATD3A_HUMAN | ATPase family AAA domain-containing protein 3A OS=Homo sapiens GN=ATAD3A PE=1 SV=2 | 529 | 704 | 2.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5T9A4|ATD3B_HUMAN | ATPase family AAA domain-containing protein 3B OS=Homo sapiens GN=ATAD3B PE=1 SV=1 | 529 | 704 | 1.0E-11 |
| sp|Q6NVR9|ATAD3_XENTR | ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis GN=atad3 PE=2 SV=1 | 556 | 704 | 3.0E-10 |
| sp|Q58E76|ATD3A_XENLA | ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis GN=atad3-a PE=2 SV=1 | 556 | 704 | 4.0E-10 |
| sp|Q6PAX2|ATD3B_XENLA | ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis GN=atad3-b PE=2 SV=1 | 556 | 704 | 1.0E-09 |
| sp|Q9NVI7|ATD3A_HUMAN | ATPase family AAA domain-containing protein 3A OS=Homo sapiens GN=ATAD3A PE=1 SV=2 | 529 | 704 | 2.0E-09 |
| sp|Q20748|ATAD3_CAEEL | ATPase family AAA domain-containing protein 3 OS=Caenorhabditis elegans GN=atad-3 PE=3 SV=2 | 551 | 701 | 9.0E-09 |
| sp|Q3KRE0|ATAD3_RAT | ATPase family AAA domain-containing protein 3 OS=Rattus norvegicus GN=Atad3 PE=1 SV=1 | 529 | 704 | 2.0E-08 |
| sp|Q925I1|ATAD3_MOUSE | ATPase family AAA domain-containing protein 3 OS=Mus musculus GN=Atad3 PE=1 SV=1 | 529 | 704 | 2.0E-08 |
| sp|A7YWC4|ATAD3_BOVIN | ATPase family AAA domain-containing protein 3 OS=Bos taurus GN=ATAD3 PE=2 SV=1 | 529 | 704 | 5.0E-08 |
| sp|Q5T2N8|ATD3C_HUMAN | ATPase family AAA domain-containing protein 3C OS=Homo sapiens GN=ATAD3C PE=2 SV=2 | 552 | 684 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0043168 | anion binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 36.51 | 19.96 | 53.06 |
| CcL | In ants, during behavior modification | 65.54 | 33.97 | 97.11 |
| CcD | In ants, recently dead | 38.15 | 20.69 | 55.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.007475 | yes |
| SC16a | CcD | 0.876087 | no |
| CcL | CcD | 0.015671 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7887 MFPSSRPGSDGAVNAVDDDDAVASIQSSGLSSGPWTESGWTEADKVTEQDGHFPDIIYSLKRYGRGGRLVDNVVR DRPFAETDLYGPLSGPDVEQRRRPVLQIVTRTFQGAPRRARLYSPPPPERDSEDDDDDDDCDDTHSQAMIIHSEH LVNALQAVIEYDPDLVIGNPFRISAPYRSLYHHRQQLADYRNQQPSAHGPEQAATTSRHIDVLLGFLERHLGDQV RREAERHKLDPPQATFDLFWLLLKPGTVVYAKRHGFWTAYIISGVLMPRSQTDGYSVTAWLLESDGSRLQRLDEV HGVPRWRGEHAVGSLPVIPAALWPEDWEAQAGRTMHDKQVAEGRLYWELLQRPTYMQYDGLLLNAWPDEDAAQVG FMKGRVICDGAGLDKLYGMAIEDRPQPRGCWRGGWSPPPPPPPPPPPLPPLLMPPSRRHTLPQSAPRCGCRACSL ERPRSDIKGPFHGFQGLDPVSERAPENNGSFFLVCSKIIPAFVLGTRRWAAVHVSKLDAVDADKEAFCYLAIDDG IKRTVEALVGQFASSTTTTRVEPWGSDFVRNKGQGRILLLHGQPGVGKTCTAECMAEASGRPLLALTSGDLGLSG SEHLVERRLNYFLGLGQRYGALVLIDEADVYLEQRRASDIARNGLVALFLRALEYYRGLVVLTTNRVRCFDAAFL SRVHVALHYRNLSLSLRERVWSTAFDRLVRDSHGRVVVANDARRFVLDPSHTLSSSSSSSSSSSSSAAAVNGREI RNALQTALALAQSQCPDHHHDPVVVVRESHLRAVLDLTQAFKDFAAALEE |
| Coding | >Ophio5|7887 ATGTTTCCCTCTTCTCGGCCCGGGTCCGATGGTGCGGTCAATGCAGTGGACGACGACGATGCCGTCGCCTCTATA CAGAGTTCTGGCCTTTCCTCGGGGCCTTGGACGGAGTCCGGCTGGACCGAGGCGGATAAGGTGACGGAACAAGAC GGCCATTTCCCGGACATCATTTACAGCCTCAAACGTTATGGCAGAGGCGGCCGGCTCGTCGATAATGTCGTGCGC GACAGACCTTTTGCCGAGACAGACTTATACGGCCCCCTGAGCGGTCCAGATGTCGAGCAGAGGAGGAGGCCTGTG CTACAGATTGTGACGAGGACATTCCAAGGCGCACCTCGGAGAGCTCGGCTTTACTCACCTCCTCCCCCTGAGCGC GACTCGGAAGACGACGACGATGATGACGACTGCGACGATACTCACTCCCAAGCCATGATCATCCACTCAGAGCAC CTTGTCAATGCTCTGCAGGCCGTCATCGAGTACGACCCCGATTTGGTCATTGGTAACCCGTTCCGGATATCTGCT CCCTACCGCTCCCTCTACCACCATCGTCAGCAGCTGGCAGACTATCGGAACCAGCAGCCGAGCGCCCATGGCCCC GAGCAAGCCGCAACGACGTCACGACACATTGATGTTCTCCTCGGCTTCCTGGAGAGGCACCTCGGCGACCAAGTG CGGCGGGAAGCAGAGCGTCACAAGCTCGATCCCCCGCAGGCCACCTTTGATCTGTTTTGGCTGCTCCTCAAGCCC GGCACCGTGGTATACGCCAAACGACACGGCTTCTGGACCGCGTACATCATCAGCGGTGTCTTGATGCCCCGGAGT CAAACCGACGGCTACAGCGTCACCGCCTGGCTACTGGAATCGGACGGGAGCCGGCTGCAGCGTCTGGACGAGGTC CACGGCGTGCCGCGATGGCGTGGCGAACATGCCGTCGGGAGCCTGCCCGTCATTCCTGCGGCGCTCTGGCCCGAG GACTGGGAAGCCCAGGCAGGGCGGACCATGCACGACAAGCAGGTTGCCGAGGGCAGGCTATACTGGGAGCTCCTC CAGCGGCCCACGTACATGCAGTACGACGGCTTGCTGCTGAACGCCTGGCCGGACGAGGACGCGGCTCAGGTGGGC TTCATGAAGGGCCGCGTCATATGCGACGGAGCCGGCTTGGACAAGTTGTACGGCATGGCCATTGAGGATCGGCCT CAGCCGCGCGGCTGCTGGCGGGGGGGATGGTCACCTCCTCCTCCCCCTCCCCCTCCTCCCCCTCCTCTTCCGCCA CTCTTGATGCCCCCGAGCAGGAGACATACTCTGCCTCAGAGCGCGCCTCGCTGCGGATGTCGAGCCTGCAGTCTC GAGCGGCCCCGGAGCGACATCAAGGGACCCTTTCACGGCTTCCAAGGCTTGGACCCCGTCAGCGAAAGAGCGCCG GAAAACAACGGGTCCTTCTTCCTCGTCTGCAGCAAGATCATACCGGCCTTTGTTCTCGGCACGCGCCGCTGGGCT GCGGTTCACGTATCCAAGCTCGATGCTGTCGATGCCGACAAGGAGGCGTTCTGCTACCTCGCCATCGACGACGGC ATCAAGCGCACCGTGGAAGCACTCGTGGGCCAGTTCGCATCGTCGACGACGACGACGAGAGTCGAGCCCTGGGGC AGCGACTTTGTCCGCAACAAGGGCCAAGGCCGCATCCTCCTCCTCCACGGCCAGCCCGGCGTCGGCAAGACGTGT ACAGCCGAATGCATGGCGGAAGCCAGCGGCCGACCTCTCCTAGCCCTCACCAGCGGCGATCTGGGCCTCTCCGGC AGCGAGCACCTCGTCGAGAGGCGACTGAATTACTTCCTCGGCCTGGGCCAACGGTACGGCGCCCTCGTCCTCATC GACGAGGCAGACGTCTACCTCGAACAACGACGCGCGTCCGACATTGCCCGCAACGGCCTCGTCGCCCTCTTCCTT CGCGCCCTGGAATACTACCGCGGTCTCGTCGTCCTCACCACCAATCGCGTCCGATGCTTTGACGCCGCCTTCCTG AGCCGCGTCCACGTCGCTCTCCATTATCGGAATCTATCCCTCTCTCTTCGAGAGCGCGTCTGGTCGACGGCTTTC GATCGTCTCGTTCGCGACTCGCACGGTCGCGTCGTCGTCGCCAATGACGCCAGACGATTCGTCCTCGACCCGTCC CATACGCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCCGCCGCCGTCAACGGAAGAGAGATT AGGAACGCGCTGCAGACGGCCCTCGCTCTCGCCCAGAGCCAGTGTCCTGACCACCACCATGACCCTGTCGTCGTC GTGCGCGAGAGTCATTTGCGTGCCGTCTTGGATCTGACGCAAGCTTTCAAGGATTTTGCTGCTGCCTTGGAGGAG |
| Transcript | >Ophio5|7887 ATGTTTCCCTCTTCTCGGCCCGGGTCCGATGGTGCGGTCAATGCAGTGGACGACGACGATGCCGTCGCCTCTATA CAGAGTTCTGGCCTTTCCTCGGGGCCTTGGACGGAGTCCGGCTGGACCGAGGCGGATAAGGTGACGGAACAAGAC GGCCATTTCCCGGACATCATTTACAGCCTCAAACGTTATGGCAGAGGCGGCCGGCTCGTCGATAATGTCGTGCGC GACAGACCTTTTGCCGAGACAGACTTATACGGCCCCCTGAGCGGTCCAGATGTCGAGCAGAGGAGGAGGCCTGTG CTACAGATTGTGACGAGGACATTCCAAGGCGCACCTCGGAGAGCTCGGCTTTACTCACCTCCTCCCCCTGAGCGC GACTCGGAAGACGACGACGATGATGACGACTGCGACGATACTCACTCCCAAGCCATGATCATCCACTCAGAGCAC CTTGTCAATGCTCTGCAGGCCGTCATCGAGTACGACCCCGATTTGGTCATTGGTAACCCGTTCCGGATATCTGCT CCCTACCGCTCCCTCTACCACCATCGTCAGCAGCTGGCAGACTATCGGAACCAGCAGCCGAGCGCCCATGGCCCC GAGCAAGCCGCAACGACGTCACGACACATTGATGTTCTCCTCGGCTTCCTGGAGAGGCACCTCGGCGACCAAGTG CGGCGGGAAGCAGAGCGTCACAAGCTCGATCCCCCGCAGGCCACCTTTGATCTGTTTTGGCTGCTCCTCAAGCCC GGCACCGTGGTATACGCCAAACGACACGGCTTCTGGACCGCGTACATCATCAGCGGTGTCTTGATGCCCCGGAGT CAAACCGACGGCTACAGCGTCACCGCCTGGCTACTGGAATCGGACGGGAGCCGGCTGCAGCGTCTGGACGAGGTC CACGGCGTGCCGCGATGGCGTGGCGAACATGCCGTCGGGAGCCTGCCCGTCATTCCTGCGGCGCTCTGGCCCGAG GACTGGGAAGCCCAGGCAGGGCGGACCATGCACGACAAGCAGGTTGCCGAGGGCAGGCTATACTGGGAGCTCCTC CAGCGGCCCACGTACATGCAGTACGACGGCTTGCTGCTGAACGCCTGGCCGGACGAGGACGCGGCTCAGGTGGGC TTCATGAAGGGCCGCGTCATATGCGACGGAGCCGGCTTGGACAAGTTGTACGGCATGGCCATTGAGGATCGGCCT CAGCCGCGCGGCTGCTGGCGGGGGGGATGGTCACCTCCTCCTCCCCCTCCCCCTCCTCCCCCTCCTCTTCCGCCA CTCTTGATGCCCCCGAGCAGGAGACATACTCTGCCTCAGAGCGCGCCTCGCTGCGGATGTCGAGCCTGCAGTCTC GAGCGGCCCCGGAGCGACATCAAGGGACCCTTTCACGGCTTCCAAGGCTTGGACCCCGTCAGCGAAAGAGCGCCG GAAAACAACGGGTCCTTCTTCCTCGTCTGCAGCAAGATCATACCGGCCTTTGTTCTCGGCACGCGCCGCTGGGCT GCGGTTCACGTATCCAAGCTCGATGCTGTCGATGCCGACAAGGAGGCGTTCTGCTACCTCGCCATCGACGACGGC ATCAAGCGCACCGTGGAAGCACTCGTGGGCCAGTTCGCATCGTCGACGACGACGACGAGAGTCGAGCCCTGGGGC AGCGACTTTGTCCGCAACAAGGGCCAAGGCCGCATCCTCCTCCTCCACGGCCAGCCCGGCGTCGGCAAGACGTGT ACAGCCGAATGCATGGCGGAAGCCAGCGGCCGACCTCTCCTAGCCCTCACCAGCGGCGATCTGGGCCTCTCCGGC AGCGAGCACCTCGTCGAGAGGCGACTGAATTACTTCCTCGGCCTGGGCCAACGGTACGGCGCCCTCGTCCTCATC GACGAGGCAGACGTCTACCTCGAACAACGACGCGCGTCCGACATTGCCCGCAACGGCCTCGTCGCCCTCTTCCTT CGCGCCCTGGAATACTACCGCGGTCTCGTCGTCCTCACCACCAATCGCGTCCGATGCTTTGACGCCGCCTTCCTG AGCCGCGTCCACGTCGCTCTCCATTATCGGAATCTATCCCTCTCTCTTCGAGAGCGCGTCTGGTCGACGGCTTTC GATCGTCTCGTTCGCGACTCGCACGGTCGCGTCGTCGTCGCCAATGACGCCAGACGATTCGTCCTCGACCCGTCC CATACGCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCCGCCGCCGTCAACGGAAGAGAGATT AGGAACGCGCTGCAGACGGCCCTCGCTCTCGCCCAGAGCCAGTGTCCTGACCACCACCATGACCCTGTCGTCGTC GTGCGCGAGAGTCATTTGCGTGCCGTCTTGGATCTGACGCAAGCTTTCAAGGATTTTGCTGCTGCCTTGGAGGAG TGA |
| Gene | >Ophio5|7887 ATGTTTCCCTCTTCTCGGCCCGGGTCCGATGGTGCGGTCAATGCAGTGGACGACGACGATGCCGTCGCCTCTATA CAGAGTTCTGGCCTTTCCTCGGGGCCTTGGACGGAGTCCGGCTGGACCGAGGCGGATAAGGTGACGGAACAAGAC GGCCATTTCCCGGACATCATTTACAGCCTCAAACGTTATGGCAGAGGCGGCCGGCTCGTCGATAGTAGGAGACCC GGTGTACGCCCCTTTCTACTACTCGCTTGCATGCTGAATGCCTTGATAGATGTCGTGCGCGACAGACCTTTTGCC GAGACAGACTTATACGGCCCCCTGAGCGGTCCAGATGTCGAGCAGAGGAGGAGGCCTGTGCTACAGATTGTGACG AGGACATTCCAAGGCGCACCTCGGAGAGCTCGGCTTTACTCACCTCCTCCCCCTGAGCGCGACTCGGAAGACGAC GACGATGATGACGACTGCGACGATACTCACTCCCAAGCCATGATCATCCACTCAGAGCACCTTGTCAATGCTCTG CAGGCCGTCATCGAGTACGACCCCGATTTGGTCATTGGTAACCCGTTCCGGATATCTGCTCCCTACCGCTCCCTC TACCACCATCGTCAGCAGCTGGCAGACTATCGGAACCAGCAGCCGAGCGCCCATGGCCCCGAGCAAGCCGCAACG ACGTCACGACACATTGATGTTCTCCTCGGCTTCCTGGAGAGGCACCTCGGCGACCAAGTGCGGCGGGAAGCAGAG CGTCACAAGCTCGATCCCCCGCAGGCCACCTTTGATCTGTTTTGGCTGCTCCTCAAGCCCGGCACCGTGGTATAC GCCAAACGACACGGCTTCTGGACCGCGTACATCATCAGCGGTGTCTTGATGCCCCGGAGTCAAACCGACGGCTAC AGCGTCACCGCCTGGCTACTGGAATCGGACGGGAGCCGGCTGCAGCGTCTGGACGAGGTCCACGGCGTGCCGCGA TGGCGTGGCGAACATGCCGTCGGGAGCCTGCCCGTCATTCCTGCGGCGCTCTGGCCCGAGGACTGGGAAGCCCAG GCAGGGCGGACCATGCACGACAAGCAGGTTGCCGAGGGCAGGCTATACTGGGAGCTCCTCCAGCGGCCCACGTAC ATGCAGTACGACGGCTTGCTGCTGAACGCCTGGCCGGACGAGGACGCGGCTCAGGTGGGCTTCATGAAGGGCCGC GTCATATGCGACGGAGCCGGCTTGGACAAGTTGTACGGCATGGCCATTGAGGATCGGCCTCAGCCGCGCGGCTGC TGGCGGGGGGGATGGTCACCTCCTCCTCCCCCTCCCCCTCCTCCCCCTCCTCTTCCGCCACTCTTGATGCCCCCG AGCAGGAGACATACTCTGCCTCAGAGCGCGCCTCGCTGCGGATGTCGAGCCTGCAGTCTCGAGCGGCCCCGGAGC GACATCAAGGGACCCTTTCACGGCTTCCAAGGCTTGGACCCCGTCAGCGAAAGAGCGCCGGAAAACAACGGGTCC TTCTTCCTCGTCTGCAGCAAGATCATACCGGCCTTTGTTCTCGGCACGCGCCGCTGGGCTGCGGTTCACGTATCC AAGCTCGATGCTGTCGATGCCGACAAGGAGGCGTTCTGCTACCTCGCCATCGACGACGGCATCAAGCGCACCGTG GAAGCACTCGTGGGCCAGTTCGCATCGTCGACGACGACGACGAGAGTCGAGCCCTGGGGCAGCGACTTTGTCCGC AACAAGGGCCAAGGCCGCATCCTCCTCCTCCACGGCCAGCCCGGCGTCGGCAAGACGTGTACAGCCGAATGCATG GCGGAAGCCAGCGGCCGACCTCTCCTAGCCCTCACCAGCGGCGATCTGGGCCTCTCCGGCAGCGAGCACCTCGTC GAGAGGCGACTGAATTACTTCCTCGGCCTGGGCCAACGGTACGGCGCCCTCGTCCTCATCGACGAGGCAGACGTC TACCTCGAACAACGACGCGCGTCCGACATTGCCCGCAACGGCCTCGTCGCCCTCTTCCTTCGCGCCCTGGAATAC TACCGCGGTCTCGTCGTCCTCACCACCAATCGCGTCCGATGCTTTGACGCCGCCTTCCTGAGCCGCGTCCACGTC GCTCTCCATTATCGGAATCTATCCCTCTCTCTTCGAGAGCGCGTCTGGTCGACGGCTTTCGATCGTCTCGTTCGC GACTCGCACGGTCGCGTCGTCGTCGCCAATGACGCCAGACGATTCGTCCTCGACCCGTCCCATACGCTTTCTTCT TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCCGCCGCCGTCAACGGAAGAGAGATTAGGAACGCGCTGCAG ACGGCCCTCGCTCTCGCCCAGAGCCAGTGTCCTGACCACCACCATGACCCTGTCGTCGTCGTGCGCGAGAGTCAT TTGCGTGCCGTCTTGGATCTGACGCAAGCTTTCAAGGATTTTGCTGCTGCCTTGGAGGAGTGA |