© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7860 |
| Gene name | |
| Location | scaffold_803:266..1387 |
| Strand | + |
| Gene length (bp) | 1121 |
| Transcript length (bp) | 903 |
| Coding sequence length (bp) | 900 |
| Protein length (aa) | 300 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02077 | SURF4 | SURF4 family | 7.4E-98 | 37 | 300 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74559|SURF4_SCHPO | Surfeit locus protein 4 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC970.06 PE=3 SV=1 | 45 | 300 | 2.0E-88 |
| sp|P53337|ERV29_YEAST | ER-derived vesicles protein ERV29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV29 PE=1 SV=1 | 1 | 300 | 5.0E-73 |
| sp|O18405|SURF4_DROME | Surfeit locus protein 4 homolog OS=Drosophila melanogaster GN=Surf4 PE=2 SV=1 | 35 | 300 | 2.0E-62 |
| sp|Q800K9|SURF4_CHICK | Surfeit locus protein 4 OS=Gallus gallus GN=SURF4 PE=2 SV=1 | 38 | 300 | 2.0E-54 |
| sp|A7YY49|SURF4_BOVIN | Surfeit locus protein 4 OS=Bos taurus GN=SURF4 PE=2 SV=1 | 41 | 300 | 2.0E-54 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74559|SURF4_SCHPO | Surfeit locus protein 4 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC970.06 PE=3 SV=1 | 45 | 300 | 2.0E-88 |
| sp|P53337|ERV29_YEAST | ER-derived vesicles protein ERV29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV29 PE=1 SV=1 | 1 | 300 | 5.0E-73 |
| sp|O18405|SURF4_DROME | Surfeit locus protein 4 homolog OS=Drosophila melanogaster GN=Surf4 PE=2 SV=1 | 35 | 300 | 2.0E-62 |
| sp|Q800K9|SURF4_CHICK | Surfeit locus protein 4 OS=Gallus gallus GN=SURF4 PE=2 SV=1 | 38 | 300 | 2.0E-54 |
| sp|A7YY49|SURF4_BOVIN | Surfeit locus protein 4 OS=Bos taurus GN=SURF4 PE=2 SV=1 | 41 | 300 | 2.0E-54 |
| sp|O57590|SURF4_TAKRU | Surfeit locus protein 4 OS=Takifugu rubripes GN=surf4 PE=3 SV=1 | 38 | 300 | 3.0E-54 |
| sp|Q7SZQ7|SURF4_DANRE | Surfeit locus protein 4 OS=Danio rerio GN=surf4 PE=2 SV=1 | 38 | 300 | 4.0E-54 |
| sp|Q64310|SURF4_MOUSE | Surfeit locus protein 4 OS=Mus musculus GN=Surf4 PE=1 SV=1 | 41 | 300 | 4.0E-54 |
| sp|Q5R705|SURF4_PONAB | Surfeit locus protein 4 OS=Pongo abelii GN=SURF4 PE=2 SV=1 | 41 | 300 | 5.0E-54 |
| sp|O15260|SURF4_HUMAN | Surfeit locus protein 4 OS=Homo sapiens GN=SURF4 PE=1 SV=3 | 41 | 300 | 5.0E-54 |
| sp|Q18864|SURF4_CAEEL | Surfeit locus protein 4 homolog OS=Caenorhabditis elegans GN=sft-4 PE=2 SV=1 | 38 | 300 | 7.0E-50 |
| sp|O45731|YFC7_CAEEL | Uncharacterized protein T02E1.7 OS=Caenorhabditis elegans GN=T02E1.7 PE=3 SV=1 | 38 | 298 | 1.0E-31 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 94 | 116 | 22 |
| 2 | 123 | 142 | 19 |
| 3 | 146 | 165 | 19 |
| 4 | 185 | 204 | 19 |
| 5 | 208 | 230 | 22 |
| 6 | 237 | 256 | 19 |
| 7 | 271 | 293 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 458.07 | 222.44 | 693.71 |
| CcL | In ants, during behavior modification | 173.72 | 67.65 | 279.79 |
| CcD | In ants, recently dead | 180.77 | 98.28 | 263.26 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.901941 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7860 MSHRGPSGYGVGGPGPYGASPSDESNGNILDQIRPYTSKVEDIMDNFSEPIKPYLPAIGRFLIVVTFLEDALRIV TQWSDQLIYLRDYRHIPGGITHLFLIINVLAMIACSGLVIIRKYSDYAVAGLMGVVVTQALGYGLIFDLNFFLRN LSVMGGLLMVLSDSWVRKSKAFAGLPQMDEKDRKMYFQLAGRVLLIFLFIGFVFSGQWSIWRVLVCFMGAGACIM VVVGFKAKFSAILLVVILSIFNLLVNNFWTLHEHHPHKDFAKYDFFQILSIVGGLLLLVNSGPGQFSIDEKKKVY |
| Coding | >Ophio5|7860 ATGTCCCACCGCGGTCCCTCGGGCTACGGCGTCGGCGGCCCTGGGCCGTACGGCGCCTCCCCGTCGGACGAGAGC AACGGCAATATCCTCGACCAGATTCGTCCCTATACCAGCAAGGTCGAGGATATCATGGACAACTTCAGCGAGCCC ATCAAGCCCTATCTGCCAGCTATCGGTCGGTTTCTCATCGTCGTCACCTTTCTCGAAGACGCGCTGCGCATCGTG ACGCAATGGAGCGATCAGCTCATCTACCTGCGCGACTACAGACACATTCCCGGCGGCATCACGCATCTGTTTCTC ATCATCAACGTTCTCGCCATGATCGCCTGCTCGGGCCTCGTCATCATCCGCAAGTACTCGGATTACGCCGTCGCC GGTCTCATGGGCGTCGTTGTCACTCAGGCCCTCGGTTACGGCCTCATCTTCGACCTCAATTTCTTCCTGCGAAAC CTGTCCGTCATGGGCGGTCTGCTCATGGTCCTGTCCGACTCGTGGGTCCGCAAGTCCAAGGCCTTTGCCGGGCTC CCGCAAATGGACGAAAAAGATCGCAAGATGTACTTTCAGCTCGCCGGCCGCGTCCTGCTCATCTTTTTGTTCATC GGCTTCGTCTTCAGCGGCCAGTGGTCCATCTGGCGGGTCCTCGTCTGCTTCATGGGCGCCGGCGCCTGCATCATG GTCGTCGTCGGCTTCAAGGCCAAGTTTAGCGCCATCCTGCTCGTCGTCATCCTGAGCATCTTTAACCTGCTCGTC AACAACTTCTGGACGCTGCACGAGCACCACCCGCACAAGGACTTTGCCAAGTACGACTTCTTCCAGATTCTGTCC ATCGTTGGCGGTCTCCTGCTCCTTGTCAACAGCGGGCCCGGACAATTCAGCATCGACGAGAAGAAGAAGGTGTAC |
| Transcript | >Ophio5|7860 ATGTCCCACCGCGGTCCCTCGGGCTACGGCGTCGGCGGCCCTGGGCCGTACGGCGCCTCCCCGTCGGACGAGAGC AACGGCAATATCCTCGACCAGATTCGTCCCTATACCAGCAAGGTCGAGGATATCATGGACAACTTCAGCGAGCCC ATCAAGCCCTATCTGCCAGCTATCGGTCGGTTTCTCATCGTCGTCACCTTTCTCGAAGACGCGCTGCGCATCGTG ACGCAATGGAGCGATCAGCTCATCTACCTGCGCGACTACAGACACATTCCCGGCGGCATCACGCATCTGTTTCTC ATCATCAACGTTCTCGCCATGATCGCCTGCTCGGGCCTCGTCATCATCCGCAAGTACTCGGATTACGCCGTCGCC GGTCTCATGGGCGTCGTTGTCACTCAGGCCCTCGGTTACGGCCTCATCTTCGACCTCAATTTCTTCCTGCGAAAC CTGTCCGTCATGGGCGGTCTGCTCATGGTCCTGTCCGACTCGTGGGTCCGCAAGTCCAAGGCCTTTGCCGGGCTC CCGCAAATGGACGAAAAAGATCGCAAGATGTACTTTCAGCTCGCCGGCCGCGTCCTGCTCATCTTTTTGTTCATC GGCTTCGTCTTCAGCGGCCAGTGGTCCATCTGGCGGGTCCTCGTCTGCTTCATGGGCGCCGGCGCCTGCATCATG GTCGTCGTCGGCTTCAAGGCCAAGTTTAGCGCCATCCTGCTCGTCGTCATCCTGAGCATCTTTAACCTGCTCGTC AACAACTTCTGGACGCTGCACGAGCACCACCCGCACAAGGACTTTGCCAAGTACGACTTCTTCCAGATTCTGTCC ATCGTTGGCGGTCTCCTGCTCCTTGTCAACAGCGGGCCCGGACAATTCAGCATCGACGAGAAGAAGAAGGTGTAC TAG |
| Gene | >Ophio5|7860 ATGTCCCACCGCGGTCCCTCGGGCTACGGCGTCGGCGGCCCTGGGCCGTACGGCGCCTCCCCGTCGGACGAGAGC AACGGCAATATCCTCGACCAGATTCGTCCCTATACCAGCAAGGTCGAGGATATCATGGACAACTTCAGCGAGCCC ATCAAGCCGTTAGTTTTTTTTTATTTTTATTTTTTTTTTCCTCGGCTCCTTCCTCTCTTACTTCGATGATACGTT TCAGGCTGACGGAAATAAACTCTGTTCAGCTATCTGCCAGCTATCGGTCGGTTTCTCATCGTCGTCACCTTTCTC GAAGACGCGCTGCGCATCGTGACGCAATGGAGCGATCAGCTCATCTACCTGCGCGACTACAGACACAGTACGAGT CTAGGCCCGAGTCCCACTGCCTTGGCTGCTTTGGCTGACACAATATGGCAGTTCCCGGCGGCATCACGCATCTGT TTCTCATCATCAACGTTCTCGCCATGATCGCCTGCTCGGGCCTCGTCATCATCCGCAAGTACTCGGATTACGCCG TCGCCGGTCTCATGGGCGTCGTTGTCACTCAGGCCCTCGGTTACGGCCTCATCTTCGACCTCAATTTCTTCCTGC GAAACCTGTCCGTCATGGGCGGTCTGCTCATGGTCCTGTCCGACTCGTGGGTCCGCAAGTCCAAGGCCTTTGCCG GGCTCCCGCAAATGGACGAAAAAGATCGCAAGATGTACTTTCAGCTCGCCGGCCGCGTCCTGCTCATCTTTTTGT TCATCGGCTTCGTCTTCAGCGGCCAGTGGTCCATCTGGCGGGTCCTCGTCTGCTTCATGGGCGCCGGCGCCTGCA TCATGGTCGTCGTCGGCTTCAAGGCCAAGTTTAGCGCCATCCTGCTCGTCGTCATCCTGAGCATCTTTAACCTGC TCGTCAACAACTTCTGGACGGTGAGTTGTTTCGAGAAGGGCCCGAGCGCGTCCCGCGACAGTGACTGACTCGGCT TCATGCAGCTGCACGAGCACCACCCGCACAAGGACTTTGCCAAGTACGACTTCTTCCAGATTCTGTCCATCGTTG GCGGTCTCCTGCTCCTTGTCAACAGCGGGCCCGGACAATTCAGCATCGACGAGAAGAAGAAGGTGTACTAG |