Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7833
Gene name
Locationscaffold_80:7262..7711
Strand+
Gene length (bp)449
Transcript length (bp)399
Coding sequence length (bp)396
Protein length (aa) 132

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF20345 DUF6640 Family of unknown function (DUF6640) 3.3E-21 8 114

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.5

Transmembrane Domains

Domain # Start End Length
1 5 22 17
2 42 64 22
3 76 95 19
4 105 127 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7833
MLGKILLTIDAIGLAVGPVIADMNETHMYNPRWPPHAKFHNAQTITLAALLGLLILYFTWRNSSNPSLRRESTKS
AMIFGSIYWIAGCCAQLFPGADGLDPEFGGPGFPQLKIFLFFLSCGILGGVCDLNGL
Coding >Ophio5|7833
ATGCTCGGAAAGATTCTTCTTACAATCGACGCCATTGGCCTCGCTGTCGGCCCAGTAATCGCCGATATGAATGAG
ACGCACATGTACAATCCGCGGTGGCCACCTCACGCGAAGTTTCATAATGCACAGACAATCACATTGGCAGCGCTT
TTAGGACTTCTTATCTTGTATTTTACGTGGCGGAACAGCTCTAACCCCTCGCTTAGACGCGAATCGACCAAGTCT
GCCATGATATTCGGCTCCATTTACTGGATTGCGGGTTGCTGTGCGCAGCTGTTCCCGGGAGCCGACGGACTTGAC
CCGGAATTCGGTGGTCCCGGATTCCCGCAACTGAAGATATTTCTTTTCTTCCTGAGCTGTGGTATTCTGGGAGGT
GTTTGTGACCTGAACGGTCTC
Transcript >Ophio5|7833
ATGCTCGGAAAGATTCTTCTTACAATCGACGCCATTGGCCTCGCTGTCGGCCCAGTAATCGCCGATATGAATGAG
ACGCACATGTACAATCCGCGGTGGCCACCTCACGCGAAGTTTCATAATGCACAGACAATCACATTGGCAGCGCTT
TTAGGACTTCTTATCTTGTATTTTACGTGGCGGAACAGCTCTAACCCCTCGCTTAGACGCGAATCGACCAAGTCT
GCCATGATATTCGGCTCCATTTACTGGATTGCGGGTTGCTGTGCGCAGCTGTTCCCGGGAGCCGACGGACTTGAC
CCGGAATTCGGTGGTCCCGGATTCCCGCAACTGAAGATATTTCTTTTCTTCCTGAGCTGTGGTATTCTGGGAGGT
GTTTGTGACCTGAACGGTCTCTGA
Gene >Ophio5|7833
ATGCTCGGAAAGATTCTTCTTACAATCGACGCCATTGGCCTCGCTGTCGGCCCAGTAATCGCCGATATGAATGAG
ACGCACATGTACAATCCGCGGTGGCCACCTCACGCGAAGTGCGTTCCATTCTAAACCCGAATTCAGCAGATGCTA
AGAGAAGTCATAGGTTTCATAATGCACAGACAATCACATTGGCAGCGCTTTTAGGACTTCTTATCTTGTATTTTA
CGTGGCGGAACAGCTCTAACCCCTCGCTTAGACGCGAATCGACCAAGTCTGCCATGATATTCGGCTCCATTTACT
GGATTGCGGGTTGCTGTGCGCAGCTGTTCCCGGGAGCCGACGGACTTGACCCGGAATTCGGTGGTCCCGGATTCC
CGCAACTGAAGATATTTCTTTTCTTCCTGAGCTGTGGTATTCTGGGAGGTGTTTGTGACCTGAACGGTCTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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