Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7800
Gene name
Locationscaffold_8:15082..16021
Strand-
Gene length (bp)939
Transcript length (bp)780
Coding sequence length (bp)777
Protein length (aa) 259

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01522 Polysacc_deac_1 Polysaccharide deacetylase 1.4E-26 49 166

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 38 250 3.0E-50
sp|D4AM78|CDA_ARTBC Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 5 252 7.0E-47
sp|P83513|XY11A_PSEXY Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 38 241 8.0E-20
sp|Q8DP63|PGDA_STRR6 Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 52 242 1.0E-19
sp|P50325|CDA_AMYRO Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 26 240 2.0E-16
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Swissprot ID Swissprot Description Start End E-value
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 38 250 3.0E-50
sp|D4AM78|CDA_ARTBC Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 5 252 7.0E-47
sp|P83513|XY11A_PSEXY Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 38 241 8.0E-20
sp|Q8DP63|PGDA_STRR6 Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 52 242 1.0E-19
sp|P50325|CDA_AMYRO Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 26 240 2.0E-16
sp|O34798|PDAC_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaC OS=Bacillus subtilis (strain 168) GN=pdaC PE=1 SV=1 31 240 6.0E-16
sp|P04675|NODB_BRASP Chitooligosaccharide deacetylase OS=Bradyrhizobium sp. (strain ANU 289) GN=nodB PE=3 SV=2 52 210 5.0E-14
sp|P50355|NODB_RHISN Chitooligosaccharide deacetylase OS=Rhizobium sp. (strain NGR234) GN=nodB PE=3 SV=2 55 210 5.0E-13
sp|P54865|XYND_CELFI Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 51 219 6.0E-13
sp|P02963|NODB_RHIME Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3 52 176 9.0E-13
sp|P50352|NODB_BRAEL Chitooligosaccharide deacetylase OS=Bradyrhizobium elkanii GN=nodB PE=3 SV=1 55 210 1.0E-12
sp|P50354|NODB_RHIGA Chitooligosaccharide deacetylase OS=Rhizobium galegae GN=nodB PE=3 SV=1 55 176 1.0E-11
sp|Q52845|NODB_RHILO Chitooligosaccharide deacetylase OS=Rhizobium loti (strain MAFF303099) GN=nodB PE=3 SV=2 52 176 1.0E-11
sp|Q06702|CDA1_YEAST Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 5 244 5.0E-11
sp|Q8SU65|YB51_ENCCU Polysaccharide deacetylase domain-containing protein ECU11_0510 OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU11_0510 PE=1 SV=1 46 241 6.0E-11
sp|P24150|NODB_RHILP Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. phaseoli GN=nodB PE=3 SV=1 52 176 2.0E-10
sp|Q06703|CDA2_YEAST Chitin deacetylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA2 PE=1 SV=1 44 242 3.0E-10
sp|P04339|NODB_RHILV Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. viciae GN=nodB PE=3 SV=1 55 210 5.0E-10
sp|O07596|YHEN_BACSU Putative polysaccharide deacetylase YheN OS=Bacillus subtilis (strain 168) GN=yheN PE=3 SV=1 52 231 6.0E-09
sp|Q07740|NODB_AZOC5 Chitooligosaccharide deacetylase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=nodB PE=3 SV=2 46 177 7.0E-09
sp|P50850|YLXY_BACSU Uncharacterized protein YlxY OS=Bacillus subtilis (strain 168) GN=ylxY PE=3 SV=2 64 245 1.0E-07
sp|P82476|CDA_CRYNH Chitin deacetylase OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CNAG_01239 PE=1 SV=3 54 216 1.0E-07
sp|P0CP76|CDA_CRYNJ Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MP 84 PE=2 SV=1 54 216 2.0E-07
sp|P0CP77|CDA_CRYNB Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=MP 84 PE=3 SV=1 54 216 3.0E-07
sp|Q59674|XY11A_CELJA Bifunctional xylanase/xylan deacetylase OS=Cellvibrio japonicus GN=xyn11A PE=1 SV=1 51 222 2.0E-06
sp|P94361|YXKH_BACSU Putative polysaccharide deacetylase YxkH OS=Bacillus subtilis (strain 168) GN=yxkH PE=3 SV=1 55 166 2.0E-06
sp|Q04729|YFUM2_GEOSE Uncharacterized 30.6 kDa protein in fumA 3'region OS=Geobacillus stearothermophilus PE=3 SV=1 53 183 4.0E-06
sp|Q99PX1|DEAA_VIBAL Chitin disaccharide deacetylase OS=Vibrio alginolyticus GN=deaA PE=1 SV=1 1 118 4.0E-06
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GO

GO Term Description Terminal node
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Yes
GO:0005975 carbohydrate metabolic process Yes
GO:0016787 hydrolase activity No
GO:0071704 organic substance metabolic process No
GO:0044238 primary metabolic process No
GO:0003824 catalytic activity No
GO:0003674 molecular_function No
GO:0008152 metabolic process No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7800
MKLSPLSLLSLAAVAVQAQALPNDSTTAGISRPKAGPIPYGTSITTCNQPGTLALTFDDGPGAYTPQLLDILDEL
QVKATFFIIGTGHEDAASAAVLRRMYNAGHQLASHTYSHQSLNGPSRWTDVTANEAYFRNIFGFFPTYIRPPYLE
CNQECLNFLGERGYHVISADVDTKDFEHDDPVGIEASRRLFSEGVSSNPAGNGHIVLAHDIHANTVTNLARFMVE
ESHRLGYRLVTVGECLGDSRDNWYRQAGEAPRSY
Coding >Ophio5|7800
ATGAAGCTTTCACCGCTGTCGCTCCTCTCTTTGGCCGCTGTCGCTGTACAAGCCCAGGCGCTGCCCAACGATTCC
ACCACCGCTGGCATCTCCCGGCCCAAGGCTGGCCCCATTCCTTACGGCACCTCGATCACGACCTGCAACCAGCCG
GGAACATTGGCATTGACGTTTGATGACGGCCCGGGAGCCTATACACCGCAACTCTTGGACATCCTGGACGAGCTC
CAGGTCAAGGCCACCTTTTTCATCATCGGAACCGGCCACGAAGACGCTGCTTCCGCAGCCGTTCTGCGTCGCATG
TATAATGCCGGCCATCAACTAGCGAGCCACACGTACTCGCACCAAAGCCTTAATGGCCCGAGCCGCTGGACCGAC
GTTACGGCGAACGAAGCTTACTTCCGAAATATCTTCGGCTTCTTCCCGACTTATATCCGCCCGCCCTATCTAGAG
TGCAACCAGGAATGTCTCAACTTTCTCGGCGAGCGCGGATACCACGTCATCTCAGCCGATGTCGACACCAAAGAC
TTTGAGCACGATGACCCTGTCGGGATAGAGGCTTCTCGAAGACTCTTCAGCGAAGGTGTATCTTCCAACCCAGCG
GGCAATGGTCACATTGTGCTCGCCCACGACATTCACGCCAACACCGTTACCAACCTTGCCCGCTTCATGGTTGAA
GAGTCGCATCGTTTGGGGTACCGGCTCGTTACCGTGGGAGAATGTCTTGGGGATTCTCGGGACAATTGGTATCGG
CAAGCGGGTGAGGCGCCTCGGTCGTAC
Transcript >Ophio5|7800
ATGAAGCTTTCACCGCTGTCGCTCCTCTCTTTGGCCGCTGTCGCTGTACAAGCCCAGGCGCTGCCCAACGATTCC
ACCACCGCTGGCATCTCCCGGCCCAAGGCTGGCCCCATTCCTTACGGCACCTCGATCACGACCTGCAACCAGCCG
GGAACATTGGCATTGACGTTTGATGACGGCCCGGGAGCCTATACACCGCAACTCTTGGACATCCTGGACGAGCTC
CAGGTCAAGGCCACCTTTTTCATCATCGGAACCGGCCACGAAGACGCTGCTTCCGCAGCCGTTCTGCGTCGCATG
TATAATGCCGGCCATCAACTAGCGAGCCACACGTACTCGCACCAAAGCCTTAATGGCCCGAGCCGCTGGACCGAC
GTTACGGCGAACGAAGCTTACTTCCGAAATATCTTCGGCTTCTTCCCGACTTATATCCGCCCGCCCTATCTAGAG
TGCAACCAGGAATGTCTCAACTTTCTCGGCGAGCGCGGATACCACGTCATCTCAGCCGATGTCGACACCAAAGAC
TTTGAGCACGATGACCCTGTCGGGATAGAGGCTTCTCGAAGACTCTTCAGCGAAGGTGTATCTTCCAACCCAGCG
GGCAATGGTCACATTGTGCTCGCCCACGACATTCACGCCAACACCGTTACCAACCTTGCCCGCTTCATGGTTGAA
GAGTCGCATCGTTTGGGGTACCGGCTCGTTACCGTGGGAGAATGTCTTGGGGATTCTCGGGACAATTGGTATCGG
CAAGCGGGTGAGGCGCCTCGGTCGTACTAA
Gene >Ophio5|7800
ATGAAGCTTTCACCGCTGTCGCTCCTCTCTTTGGCCGCTGTCGCTGTACAAGCCCAGGCGCTGCCCAACGATTCG
TAAGTGGCCCCCCCCCCTCCCCCCCTGGTGTAGCAGGAGAGCGTGTGTGTGTGTGTGTGGTGAAAAGGGGGAGAG
ACAGGCAGAGATTTGAAACGACAAGCAAAGAGAGAAGAAGAGTAAGAGTACCACCTGGCTGACGTCCAATCATCA
TTGATTAGCACCACCGCTGGCATCTCCCGGCCCAAGGCTGGCCCCATTCCTTACGGCACCTCGATCACGACCTGC
AACCAGCCGGGAACATTGGCATTGACGTTTGATGACGGCCCGGGAGCCTATACACCGCAACTCTTGGACATCCTG
GACGAGCTCCAGGTCAAGGCCACCTTTTTCATCATCGGAACCGGCCACGAAGACGCTGCTTCCGCAGCCGTTCTG
CGTCGCATGTATAATGCCGGCCATCAACTAGCGAGCCACACGTACTCGCACCAAAGCCTTAATGGCCCGAGCCGC
TGGACCGACGTTACGGCGAACGAAGCTTACTTCCGAAATATCTTCGGCTTCTTCCCGACTTATATCCGCCCGCCC
TATCTAGAGTGCAACCAGGAATGTCTCAACTTTCTCGGCGAGCGCGGATACCACGTCATCTCAGCCGATGTCGAC
ACCAAAGACTTTGAGCACGATGACCCTGTCGGGATAGAGGCTTCTCGAAGACTCTTCAGCGAAGGTGTATCTTCC
AACCCAGCGGGCAATGGTCACATTGTGCTCGCCCACGACATTCACGCCAACACCGTTACCAACCTTGCCCGCTTC
ATGGTTGAAGAGTCGCATCGTTTGGGGTACCGGCTCGTTACCGTGGGAGAATGTCTTGGGGATTCTCGGGACAAT
TGGTATCGGCAAGCGGGTGAGGCGCCTCGGTCGTACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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