Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|78
Gene name
Locationscaffold_10:28136..29035
Strand-
Gene length (bp)899
Transcript length (bp)591
Coding sequence length (bp)588
Protein length (aa) 196

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04777 Evr1_Alr Erv1 / Alr family 2.8E-29 71 156

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P56213|ALR_MOUSE FAD-linked sulfhydryl oxidase ALR OS=Mus musculus GN=Gfer PE=1 SV=2 6 158 1.0E-40
sp|P27882|ERV1_YEAST Mitochondrial FAD-linked sulfhydryl oxidase ERV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV1 PE=1 SV=2 11 156 3.0E-38
sp|Q63042|ALR_RAT FAD-linked sulfhydryl oxidase ALR OS=Rattus norvegicus GN=Gfer PE=1 SV=2 27 158 3.0E-38
sp|P55789|ALR_HUMAN FAD-linked sulfhydryl oxidase ALR OS=Homo sapiens GN=GFER PE=1 SV=2 10 158 3.0E-38
sp|O14144|ERV1_SCHPO Mitochondrial FAD-linked sulfhydryl oxidase erv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv1 PE=3 SV=1 23 155 4.0E-34
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Swissprot ID Swissprot Description Start End E-value
sp|P56213|ALR_MOUSE FAD-linked sulfhydryl oxidase ALR OS=Mus musculus GN=Gfer PE=1 SV=2 6 158 1.0E-40
sp|P27882|ERV1_YEAST Mitochondrial FAD-linked sulfhydryl oxidase ERV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV1 PE=1 SV=2 11 156 3.0E-38
sp|Q63042|ALR_RAT FAD-linked sulfhydryl oxidase ALR OS=Rattus norvegicus GN=Gfer PE=1 SV=2 27 158 3.0E-38
sp|P55789|ALR_HUMAN FAD-linked sulfhydryl oxidase ALR OS=Homo sapiens GN=GFER PE=1 SV=2 10 158 3.0E-38
sp|O14144|ERV1_SCHPO Mitochondrial FAD-linked sulfhydryl oxidase erv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv1 PE=3 SV=1 23 155 4.0E-34
sp|Q8GXX0|ERV1_ARATH FAD-linked sulfhydryl oxidase ERV1 OS=Arabidopsis thaliana GN=ERV1 PE=1 SV=1 52 175 2.0E-23
sp|Q12284|ERV2_YEAST FAD-linked sulfhydryl oxidase ERV2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV2 PE=1 SV=1 69 158 2.0E-13
sp|Q9Y806|ERV2_SCHPO FAD-linked sulfhydryl oxidase erv2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv2 PE=3 SV=1 74 155 3.0E-09
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GO

GO Term Description Terminal node
GO:0016972 thiol oxidase activity Yes
GO:0016491 oxidoreductase activity No
GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor No
GO:0003824 catalytic activity No
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 163.48 89.49 237.48
CcL In ants, during behavior modification 280.51 103.99 457.03
CcD In ants, recently dead 123.66 65.49 181.83

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.043189 yes
SC16a CcD 0.236835 no
CcL CcD 0.002815 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|78
MANDERKKDDDAPTANQPKKLPTGVVLDKDGKPCRNCTSFAAWAAQTKQQTRSVPAGPRPDCPPDVEALGRSTWT
LLHSVAASYPEKPSLAQQSDLLGFVRLFSRLYPCWVCAEDFQAYLGRHAPPVASRADFGFWLCGAHNDVNRKLGK
PEFDCSKLCPGLLRIGQTAARVRSCCSGLAAPAPSKPRPSDARIRS
Coding >Ophio5|78
ATGGCCAATGACGAGAGGAAGAAAGACGACGACGCTCCGACGGCCAACCAGCCCAAGAAACTGCCGACTGGCGTC
GTCCTCGACAAAGACGGAAAGCCCTGCCGCAACTGCACCTCCTTCGCCGCCTGGGCCGCCCAGACCAAGCAACAG
ACACGATCCGTCCCGGCCGGCCCTCGCCCAGATTGCCCGCCCGACGTCGAGGCCCTCGGCCGTAGCACCTGGACC
CTCCTCCATTCCGTGGCCGCCAGCTACCCGGAGAAGCCTTCGCTCGCGCAGCAGTCGGACCTCCTCGGCTTCGTC
CGTCTCTTCTCCCGCCTCTATCCCTGCTGGGTCTGCGCCGAGGACTTTCAGGCCTATCTCGGCCGCCACGCGCCG
CCCGTCGCCAGCCGCGCTGACTTCGGCTTCTGGCTCTGCGGCGCCCACAACGACGTCAATCGCAAGCTGGGCAAG
CCCGAGTTCGATTGCTCCAAGTTGTGTCCAGGGCTGTTGAGGATAGGGCAGACGGCAGCCCGTGTCCGATCGTGC
TGTTCCGGCCTCGCAGCTCCCGCTCCATCCAAACCCAGACCGAGCGACGCTCGAATCCGTTCA
Transcript >Ophio5|78
ATGGCCAATGACGAGAGGAAGAAAGACGACGACGCTCCGACGGCCAACCAGCCCAAGAAACTGCCGACTGGCGTC
GTCCTCGACAAAGACGGAAAGCCCTGCCGCAACTGCACCTCCTTCGCCGCCTGGGCCGCCCAGACCAAGCAACAG
ACACGATCCGTCCCGGCCGGCCCTCGCCCAGATTGCCCGCCCGACGTCGAGGCCCTCGGCCGTAGCACCTGGACC
CTCCTCCATTCCGTGGCCGCCAGCTACCCGGAGAAGCCTTCGCTCGCGCAGCAGTCGGACCTCCTCGGCTTCGTC
CGTCTCTTCTCCCGCCTCTATCCCTGCTGGGTCTGCGCCGAGGACTTTCAGGCCTATCTCGGCCGCCACGCGCCG
CCCGTCGCCAGCCGCGCTGACTTCGGCTTCTGGCTCTGCGGCGCCCACAACGACGTCAATCGCAAGCTGGGCAAG
CCCGAGTTCGATTGCTCCAAGTTGTGTCCAGGGCTGTTGAGGATAGGGCAGACGGCAGCCCGTGTCCGATCGTGC
TGTTCCGGCCTCGCAGCTCCCGCTCCATCCAAACCCAGACCGAGCGACGCTCGAATCCGTTCATAG
Gene >Ophio5|78
ATGGCCAATGACGAGAGGAAGAAAGACGACGACGCTCCGACGGCCAACCAGCCCAAGAAACTGCCGACTGGCGTC
GTCCTCGACAAAGACGGAAAGCCGTGAGTCGTCCGGATGCTCATGGTCTTTCGTTTTTTTTGTTTCCTCTCTAGC
TTCATGCACGAGAAAGGTGCCAATTGCCCCTGACCACTCCAGCTGCCGCAACTGCACCTCCTTCGCCGCCTGGGC
CGCCCAGACCAAGCAACAGACACGATCCGTCCCGGCCGGCCCTCGCCCAGATTGCCCGCCCGACGTCGAGGCCCT
CGGCCGTAGCACCTGGACCCTCCTCCATTCCGTGGCCGCCAGCTACCCGGAGAAGCCTTCGCTCGCGCAGCAGTC
GGACCTCCTCGGCTTCGTCCGTCTCTTCTCCCGCCTCTATCCCTGCTGGGTCTGCGCCGAGGACTTTCAGGCCTA
TCTCGGCCGCCACGCGCCGCCCGTCGCCAGCCGCGCTGACTTCGGCTTCTGGCTCTGCGGCGCCCACAACGACGT
CAATCGCAAGCTGGGCAAGCCCGAGTTCGATTGCTCCAAGTGGGAGGAGCGGTGGCGCACCGGATGGGCGGATGG
GCGCTGCGGCTGACGTGCGACACTTCCTACCTACCTACCTGCCTACCTACCTACCTAACTGCCTAGTAACCTTGG
CACCCAACTCTTCACTCAGCCACCTGTCCAATATAAGCGTCTCCAGGTTGTGTCCAGGGCTGTTGAGGATAGGGC
AGACGGCAGCCCGTGTCCGATCGTGCTGTTCCGGCCTCGCAGCTCCCGCTCCATCCAAACCCAGACCGAGCGACG
GTGCGTCATCACCAATGGTTGGGTTGCCGTACGTAGGCTGACGCGACGCGGGCCTAGCTCGAATCCGTTCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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