Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|7771
Gene name
Location	scaffold_791:6450..7185
Strand	-
Gene length (bp)	735
Transcript length (bp)	678
Coding sequence length (bp)	675
Protein length (aa)	225

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 19	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	3059.27	948.12	5170.41
CcL	In ants, during behavior modification	3615.58	704.23	6526.93
CcD	In ants, recently dead	4678.46	1202.57	8154.36

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.685863	no
SC16a	CcD	0.235608	no
CcL	CcD	0.524852	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|7771 MRFHSLFASGVFALAVNAQGVTSSAEAPMASSAYEDSKPSQTYSPSPAEASASACLAACNGDVNCKAHCITVPSP NKDQAKATNDCTANCAKGDGSKATNDAYSTCVQKCISDNFYNQPIGTPDNKHFAGGSGNSGNAGSSSSSDTGNDG ASASGTATGTGATATQTDTDESSSSSSSASRSASASGSSSSGTRAAASSTSQGLAPAVTAAPAAALGLVAMVLAL
Coding	>Ophio5\|7771 ATGCGTTTCCACAGCCTGTTTGCCAGCGGCGTCTTCGCCCTCGCCGTCAACGCTCAGGGTGTCACCTCGTCGGCC GAGGCGCCCATGGCTTCGTCGGCGTATGAAGACTCCAAGCCGTCGCAGACGTACTCGCCTTCGCCTGCCGAGGCG TCCGCCAGCGCGTGTCTTGCCGCTTGCAATGGGGATGTGAACTGCAAGGCTCACTGCATCACGGTCCCCTCGCCC AACAAGGACCAGGCCAAGGCCACCAACGACTGCACCGCCAATTGCGCCAAGGGCGACGGCTCAAAGGCCACCAAC GACGCCTATAGCACTTGCGTCCAGAAGTGCATCTCGGACAACTTCTATAACCAGCCTATTGGCACTCCCGACAAC AAGCACTTTGCCGGTGGCTCGGGCAACTCCGGAAACGCGGGCAGCAGCAGCAGCAGCGATACCGGCAACGACGGC GCGAGTGCTTCTGGTACGGCTACCGGCACCGGCGCCACCGCCACTCAGACCGATACGGACGAGTCTTCTTCTTCT TCTTCTTCCGCCTCCAGGTCTGCCTCTGCCTCTGGCTCCTCCTCCTCCGGCACCCGCGCTGCGGCCTCGTCGACG TCGCAGGGTCTTGCCCCGGCTGTCACCGCCGCGCCCGCCGCTGCCCTTGGTCTGGTCGCCATGGTTCTTGCTCTG
Transcript	>Ophio5\|7771 ATGCGTTTCCACAGCCTGTTTGCCAGCGGCGTCTTCGCCCTCGCCGTCAACGCTCAGGGTGTCACCTCGTCGGCC GAGGCGCCCATGGCTTCGTCGGCGTATGAAGACTCCAAGCCGTCGCAGACGTACTCGCCTTCGCCTGCCGAGGCG TCCGCCAGCGCGTGTCTTGCCGCTTGCAATGGGGATGTGAACTGCAAGGCTCACTGCATCACGGTCCCCTCGCCC AACAAGGACCAGGCCAAGGCCACCAACGACTGCACCGCCAATTGCGCCAAGGGCGACGGCTCAAAGGCCACCAAC GACGCCTATAGCACTTGCGTCCAGAAGTGCATCTCGGACAACTTCTATAACCAGCCTATTGGCACTCCCGACAAC AAGCACTTTGCCGGTGGCTCGGGCAACTCCGGAAACGCGGGCAGCAGCAGCAGCAGCGATACCGGCAACGACGGC GCGAGTGCTTCTGGTACGGCTACCGGCACCGGCGCCACCGCCACTCAGACCGATACGGACGAGTCTTCTTCTTCT TCTTCTTCCGCCTCCAGGTCTGCCTCTGCCTCTGGCTCCTCCTCCTCCGGCACCCGCGCTGCGGCCTCGTCGACG TCGCAGGGTCTTGCCCCGGCTGTCACCGCCGCGCCCGCCGCTGCCCTTGGTCTGGTCGCCATGGTTCTTGCTCTG TAA
Gene	>Ophio5\|7771 ATGCGTTTCCACAGCCTGTTTGCCAGCGGCGTCTTCGCCCTCGCCGTCAACGCTCAGGGTGTCACCTCGTCGGCC GAGGCGCCCATGGCTTCGTCGGCGTATGAAGACTCCAAGCCGTCGCAGACGTACTCGCCTTCGCCTGCCGAGGCG TCCGCCAGCGCGTGTCTTGCCGCTTGCAATGGGGATGTGAACTGCAAGGCTCACTGCATCACGGTATGTCTACCT TGAACATATCGGCCTCGCGTCGCGTCTAGCTGACTTGGTGGGAAGGTCCCCTCGCCCAACAAGGACCAGGCCAAG GCCACCAACGACTGCACCGCCAATTGCGCCAAGGGCGACGGCTCAAAGGCCACCAACGACGCCTATAGCACTTGC GTCCAGAAGTGCATCTCGGACAACTTCTATAACCAGCCTATTGGCACTCCCGACAACAAGCACTTTGCCGGTGGC TCGGGCAACTCCGGAAACGCGGGCAGCAGCAGCAGCAGCGATACCGGCAACGACGGCGCGAGTGCTTCTGGTACG GCTACCGGCACCGGCGCCACCGCCACTCAGACCGATACGGACGAGTCTTCTTCTTCTTCTTCTTCCGCCTCCAGG TCTGCCTCTGCCTCTGGCTCCTCCTCCTCCGGCACCCGCGCTGCGGCCTCGTCGACGTCGCAGGGTCTTGCCCCG GCTGTCACCGCCGCGCCCGCCGCTGCCCTTGGTCTGGTCGCCATGGTTCTTGCTCTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail