© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7764 |
| Gene name | |
| Location | scaffold_79:31012..33307 |
| Strand | - |
| Gene length (bp) | 2295 |
| Transcript length (bp) | 2175 |
| Coding sequence length (bp) | 2172 |
| Protein length (aa) | 724 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08172 | CASP_C | CASP C terminal | 1.1E-93 | 434 | 681 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59795|CASP_SCHPO | Protein CASP OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=coy1 PE=3 SV=1 | 29 | 679 | 2.0E-68 |
| sp|P34237|CASP_YEAST | Protein CASP OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COY1 PE=1 SV=2 | 29 | 681 | 3.0E-68 |
| sp|Q5R8V1|CASP_PONAB | Protein CASP OS=Pongo abelii GN=CUTL1 PE=2 SV=1 | 26 | 696 | 2.0E-53 |
| sp|Q13948|CASP_HUMAN | Protein CASP OS=Homo sapiens GN=CUX1 PE=1 SV=2 | 26 | 696 | 2.0E-52 |
| sp|P70403|CASP_MOUSE | Protein CASP OS=Mus musculus GN=Cux1 PE=1 SV=2 | 36 | 700 | 6.0E-51 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59795|CASP_SCHPO | Protein CASP OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=coy1 PE=3 SV=1 | 29 | 679 | 2.0E-68 |
| sp|P34237|CASP_YEAST | Protein CASP OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COY1 PE=1 SV=2 | 29 | 681 | 3.0E-68 |
| sp|Q5R8V1|CASP_PONAB | Protein CASP OS=Pongo abelii GN=CUTL1 PE=2 SV=1 | 26 | 696 | 2.0E-53 |
| sp|Q13948|CASP_HUMAN | Protein CASP OS=Homo sapiens GN=CUX1 PE=1 SV=2 | 26 | 696 | 2.0E-52 |
| sp|P70403|CASP_MOUSE | Protein CASP OS=Mus musculus GN=Cux1 PE=1 SV=2 | 36 | 700 | 6.0E-51 |
| sp|Q9LS42|CASP_ARATH | Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2 | 36 | 688 | 2.0E-42 |
| sp|P53565|CUX1_RAT | Homeobox protein cut-like 1 OS=Rattus norvegicus GN=Cux1 PE=1 SV=2 | 26 | 428 | 5.0E-25 |
| sp|Q8IA98|CASP_CAEEL | Protein CASP OS=Caenorhabditis elegans GN=ceh-44 PE=3 SV=1 | 35 | 676 | 3.0E-22 |
| sp|P53564|CUX1_MOUSE | Homeobox protein cut-like 1 OS=Mus musculus GN=Cux1 PE=1 SV=3 | 44 | 428 | 1.0E-21 |
| sp|P39880|CUX1_HUMAN | Homeobox protein cut-like 1 OS=Homo sapiens GN=CUX1 PE=1 SV=3 | 44 | 428 | 5.0E-21 |
| sp|Q9BL02|CUT_CAEEL | Homeobox protein cut-like ceh-44 OS=Caenorhabditis elegans GN=ceh-44 PE=3 SV=1 | 35 | 425 | 2.0E-09 |
| sp|O14529|CUX2_HUMAN | Homeobox protein cut-like 2 OS=Homo sapiens GN=CUX2 PE=1 SV=4 | 26 | 133 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030173 | integral component of Golgi membrane | Yes |
| GO:0006891 | intra-Golgi vesicle-mediated transport | Yes |
| GO:0031301 | integral component of organelle membrane | No |
| GO:0016192 | vesicle-mediated transport | No |
| GO:0016021 | integral component of membrane | No |
| GO:0031300 | intrinsic component of organelle membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0048193 | Golgi vesicle transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| GO:0031228 | intrinsic component of Golgi membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 659 | 678 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7764 MADAAQAPAPAPAPVTGLASDPVEGGNKFQRAISAWRNVDLTTLTASLDNTASEIVTYQRDSTVQRKDLAQKTKE FRKLEDASKLAEIKGLLKAYQTFIDLLTTHTKSVNSAFLQAYTSISDAPDPYPLLEAAVDSMLVTEETLPRLTEE NQRLQENVVKLTTQLGDAESKLQVERAARKESEDTLEARVKGVESSWTAVLDEKRDNWEARERSLEEKLENQERL LNEMRASYEVGQRLGLSGDDADTQRGNASSAELEMLHSELERAGSRLAEVEARNEQMRLELAQAKSSLSSQPEKS LEDDPDYMRMRTENSSLIRKLEAARMDKESTKRDLNTRLHSMEREAALLKEERALLKSKMQNWSDYDDIKQELEV LKSIEFSTGDDDEVRDRADNSAEKGDTLEKLLLSRNKKLSEELTILRVSHQDLHSRLASIQEELSGTKEELEKAQ KLNEKLESDLANMQAEGASAFPSGVSVAGTYVTRAPTRKGRISPTSSIISGMDPRMLQEPMGGGSGILPMVTAQR DRFKKKNAQLEQDLGEAHKTMRQLRQEVAALQKDNLNLYEKTRYVSTYNRGGATASSSSAYTANPNPSTVSMGGT GNPGMSLDRYRKAYESNLSPFAAFRGRESARAYRRMSFPERVVYSVTRMVLASRASRNLFAAYCVALHVLVFLSL YWLGHSDLERHGSNFGSAAAAAAAGGEQGASLARGGTDHGQWQEDGFNG |
| Coding | >Ophio5|7764 ATGGCCGACGCCGCCCAAGCGCCTGCGCCAGCGCCAGCCCCAGTTACGGGGCTGGCTTCAGACCCGGTCGAAGGG GGAAACAAGTTTCAACGTGCCATCTCGGCATGGCGAAACGTCGACCTCACGACGTTGACAGCAAGTCTCGATAAC ACGGCATCGGAGATTGTTACCTATCAACGGGACTCGACTGTGCAACGCAAGGACCTGGCCCAAAAGACCAAGGAG TTTAGGAAGCTGGAAGACGCCTCCAAGCTGGCGGAGATCAAAGGTCTTCTCAAAGCCTACCAAACATTCATCGAT CTCCTCACTACCCACACTAAATCTGTCAATTCTGCCTTCCTTCAGGCCTACACCTCGATATCCGATGCGCCCGAT CCGTATCCGCTTCTCGAGGCCGCCGTGGACTCCATGCTCGTGACGGAAGAGACGCTCCCCAGGCTAACGGAAGAG AACCAGCGGCTGCAAGAAAATGTGGTGAAGCTGACAACTCAGCTAGGAGATGCCGAATCAAAGCTGCAGGTCGAG CGAGCCGCGCGCAAGGAGTCGGAAGATACACTTGAGGCTCGGGTCAAGGGCGTTGAATCGTCTTGGACTGCCGTG TTGGATGAGAAGAGGGACAACTGGGAAGCCCGAGAGAGGAGCCTGGAGGAGAAGCTGGAAAACCAGGAACGCCTC CTCAACGAGATGCGCGCGAGCTACGAGGTCGGTCAGCGTCTGGGCCTCAGCGGGGACGATGCGGACACACAGCGT GGCAACGCCTCGAGCGCCGAGCTGGAGATGCTTCACTCAGAGCTCGAGCGCGCAGGCTCCAGACTGGCCGAGGTA GAAGCACGGAACGAGCAGATGCGACTGGAGCTGGCTCAGGCCAAGTCTTCTCTGTCTTCCCAGCCCGAGAAATCA CTCGAGGACGACCCGGACTACATGCGGATGCGGACCGAGAACTCGTCGTTGATCCGCAAGCTTGAGGCTGCCAGG ATGGACAAGGAGAGCACCAAGCGGGATCTTAACACGCGCTTGCATTCGATGGAACGAGAGGCGGCACTGTTGAAG GAGGAGAGAGCATTGCTCAAGTCCAAGATGCAGAATTGGAGCGACTACGACGACATTAAACAAGAGCTTGAAGTG CTCAAGAGCATAGAGTTTTCTACCGGCGACGACGATGAAGTCCGCGACAGGGCGGACAACAGCGCGGAGAAGGGC GACACGCTGGAAAAGCTCTTACTGTCGCGAAACAAGAAGCTCAGCGAAGAGCTCACCATTCTGCGCGTGTCCCAT CAAGACCTCCACAGCAGGCTGGCGAGTATCCAAGAAGAGCTTTCGGGGACCAAAGAAGAACTGGAAAAGGCGCAA AAGCTCAACGAGAAGCTAGAGAGCGACCTGGCCAACATGCAGGCCGAAGGAGCGAGTGCTTTTCCCTCGGGAGTG TCTGTTGCCGGCACGTACGTGACACGTGCGCCGACTCGGAAAGGGAGGATTTCGCCGACGTCGTCCATCATCAGC GGCATGGATCCGCGCATGTTGCAGGAGCCGATGGGCGGCGGATCCGGCATCCTGCCGATGGTGACGGCGCAGCGA GACCGGTTCAAAAAGAAGAACGCGCAGCTGGAGCAGGACCTGGGCGAGGCGCACAAAACCATGCGACAGCTGCGG CAGGAGGTGGCGGCCCTACAGAAGGACAACCTGAACCTGTACGAGAAGACGCGCTACGTTTCGACATACAACCGA GGCGGGGCGACAGCATCGTCCTCGTCGGCCTACACGGCGAACCCTAACCCGTCGACGGTCTCGATGGGCGGGACT GGCAACCCCGGCATGTCGCTGGACCGTTACCGTAAGGCATACGAGTCAAACCTATCGCCCTTTGCGGCTTTTCGG GGCCGCGAGTCGGCGAGGGCGTATCGAAGGATGAGCTTCCCGGAGAGGGTTGTGTACTCGGTCACGAGGATGGTT CTGGCGTCCCGGGCGAGCAGGAACCTGTTTGCGGCGTATTGCGTCGCGCTGCACGTCCTGGTCTTCTTGTCGTTA TACTGGCTCGGGCACTCAGACTTGGAGAGGCATGGCAGCAACTTTGGGTCGGCGGCGGCGGCGGCGGCGGCGGGG GGGGAACAGGGGGCTTCTTTGGCCAGGGGCGGCACAGATCACGGGCAATGGCAAGAGGACGGCTTCAACGGA |
| Transcript | >Ophio5|7764 ATGGCCGACGCCGCCCAAGCGCCTGCGCCAGCGCCAGCCCCAGTTACGGGGCTGGCTTCAGACCCGGTCGAAGGG GGAAACAAGTTTCAACGTGCCATCTCGGCATGGCGAAACGTCGACCTCACGACGTTGACAGCAAGTCTCGATAAC ACGGCATCGGAGATTGTTACCTATCAACGGGACTCGACTGTGCAACGCAAGGACCTGGCCCAAAAGACCAAGGAG TTTAGGAAGCTGGAAGACGCCTCCAAGCTGGCGGAGATCAAAGGTCTTCTCAAAGCCTACCAAACATTCATCGAT CTCCTCACTACCCACACTAAATCTGTCAATTCTGCCTTCCTTCAGGCCTACACCTCGATATCCGATGCGCCCGAT CCGTATCCGCTTCTCGAGGCCGCCGTGGACTCCATGCTCGTGACGGAAGAGACGCTCCCCAGGCTAACGGAAGAG AACCAGCGGCTGCAAGAAAATGTGGTGAAGCTGACAACTCAGCTAGGAGATGCCGAATCAAAGCTGCAGGTCGAG CGAGCCGCGCGCAAGGAGTCGGAAGATACACTTGAGGCTCGGGTCAAGGGCGTTGAATCGTCTTGGACTGCCGTG TTGGATGAGAAGAGGGACAACTGGGAAGCCCGAGAGAGGAGCCTGGAGGAGAAGCTGGAAAACCAGGAACGCCTC CTCAACGAGATGCGCGCGAGCTACGAGGTCGGTCAGCGTCTGGGCCTCAGCGGGGACGATGCGGACACACAGCGT GGCAACGCCTCGAGCGCCGAGCTGGAGATGCTTCACTCAGAGCTCGAGCGCGCAGGCTCCAGACTGGCCGAGGTA GAAGCACGGAACGAGCAGATGCGACTGGAGCTGGCTCAGGCCAAGTCTTCTCTGTCTTCCCAGCCCGAGAAATCA CTCGAGGACGACCCGGACTACATGCGGATGCGGACCGAGAACTCGTCGTTGATCCGCAAGCTTGAGGCTGCCAGG ATGGACAAGGAGAGCACCAAGCGGGATCTTAACACGCGCTTGCATTCGATGGAACGAGAGGCGGCACTGTTGAAG GAGGAGAGAGCATTGCTCAAGTCCAAGATGCAGAATTGGAGCGACTACGACGACATTAAACAAGAGCTTGAAGTG CTCAAGAGCATAGAGTTTTCTACCGGCGACGACGATGAAGTCCGCGACAGGGCGGACAACAGCGCGGAGAAGGGC GACACGCTGGAAAAGCTCTTACTGTCGCGAAACAAGAAGCTCAGCGAAGAGCTCACCATTCTGCGCGTGTCCCAT CAAGACCTCCACAGCAGGCTGGCGAGTATCCAAGAAGAGCTTTCGGGGACCAAAGAAGAACTGGAAAAGGCGCAA AAGCTCAACGAGAAGCTAGAGAGCGACCTGGCCAACATGCAGGCCGAAGGAGCGAGTGCTTTTCCCTCGGGAGTG TCTGTTGCCGGCACGTACGTGACACGTGCGCCGACTCGGAAAGGGAGGATTTCGCCGACGTCGTCCATCATCAGC GGCATGGATCCGCGCATGTTGCAGGAGCCGATGGGCGGCGGATCCGGCATCCTGCCGATGGTGACGGCGCAGCGA GACCGGTTCAAAAAGAAGAACGCGCAGCTGGAGCAGGACCTGGGCGAGGCGCACAAAACCATGCGACAGCTGCGG CAGGAGGTGGCGGCCCTACAGAAGGACAACCTGAACCTGTACGAGAAGACGCGCTACGTTTCGACATACAACCGA GGCGGGGCGACAGCATCGTCCTCGTCGGCCTACACGGCGAACCCTAACCCGTCGACGGTCTCGATGGGCGGGACT GGCAACCCCGGCATGTCGCTGGACCGTTACCGTAAGGCATACGAGTCAAACCTATCGCCCTTTGCGGCTTTTCGG GGCCGCGAGTCGGCGAGGGCGTATCGAAGGATGAGCTTCCCGGAGAGGGTTGTGTACTCGGTCACGAGGATGGTT CTGGCGTCCCGGGCGAGCAGGAACCTGTTTGCGGCGTATTGCGTCGCGCTGCACGTCCTGGTCTTCTTGTCGTTA TACTGGCTCGGGCACTCAGACTTGGAGAGGCATGGCAGCAACTTTGGGTCGGCGGCGGCGGCGGCGGCGGCGGGG GGGGAACAGGGGGCTTCTTTGGCCAGGGGCGGCACAGATCACGGGCAATGGCAAGAGGACGGCTTCAACGGATAG |
| Gene | >Ophio5|7764 ATGGCCGACGCCGCCCAAGCGCCTGCGCCAGCGCCAGCCCCAGTTACGGGGCTGGCTTCAGACCCGGTCGAAGGG GGAAACAAGTTTCAACGTGCCATCTCGGCATGGCGAAGTACGCTCTTGTTGGCCGGCAAGGCCATCATGACGCAC ATTTGCTGACGCGTTAGGGTAGACGTCGACCTCACGACGTTGACAGCAAGTCTCGATAACACGGCATCGGAGATT GTTACCTATCAACGGGACTCGACTGTGCAACGCAAGGACCTGGCCCAAAAGACCAAGGAGTTTAGGAAGCTGGAA GACGCCTCCAAGCTGGCGGAGATCAAAGGTCTTCTCAAAGGTACTGTATTCGCAGGGGGGAGGCGACGACGACGA CTTGGCTAATCTTTACGCCCTCCAGCCTACCAAACATTCATCGATCTCCTCACTACCCACACTAAATCTGTCAAT TCTGCCTTCCTTCAGGCCTACACCTCGATATCCGATGCGCCCGATCCGTATCCGCTTCTCGAGGCCGCCGTGGAC TCCATGCTCGTGACGGAAGAGACGCTCCCCAGGCTAACGGAAGAGAACCAGCGGCTGCAAGAAAATGTGGTGAAG CTGACAACTCAGCTAGGAGATGCCGAATCAAAGCTGCAGGTCGAGCGAGCCGCGCGCAAGGAGTCGGAAGATACA CTTGAGGCTCGGGTCAAGGGCGTTGAATCGTCTTGGACTGCCGTGTTGGATGAGAAGAGGGACAACTGGGAAGCC CGAGAGAGGAGCCTGGAGGAGAAGCTGGAAAACCAGGAACGCCTCCTCAACGAGATGCGCGCGAGCTACGAGGTC GGTCAGCGTCTGGGCCTCAGCGGGGACGATGCGGACACACAGCGTGGCAACGCCTCGAGCGCCGAGCTGGAGATG CTTCACTCAGAGCTCGAGCGCGCAGGCTCCAGACTGGCCGAGGTAGAAGCACGGAACGAGCAGATGCGACTGGAG CTGGCTCAGGCCAAGTCTTCTCTGTCTTCCCAGCCCGAGAAATCACTCGAGGACGACCCGGACTACATGCGGATG CGGACCGAGAACTCGTCGTTGATCCGCAAGCTTGAGGCTGCCAGGATGGACAAGGAGAGCACCAAGCGGGATCTT AACACGCGCTTGCATTCGATGGAACGAGAGGCGGCACTGTTGAAGGAGGAGAGAGCATTGCTCAAGTCCAAGATG CAGAATTGGAGCGACTACGACGACATTAAACAAGAGCTTGAAGTGCTCAAGAGCATAGAGTTTTCTACCGGCGAC GACGATGAAGTCCGCGACAGGGCGGACAACAGCGCGGAGAAGGGCGACACGCTGGAAAAGCTCTTACTGTCGCGA AACAAGAAGCTCAGCGAAGAGCTCACCATTCTGCGCGTGTCCCATCAAGACCTCCACAGCAGGCTGGCGAGTATC CAAGAAGAGCTTTCGGGGACCAAAGAAGAACTGGAAAAGGCGCAAAAGCTCAACGAGAAGCTAGAGAGCGACCTG GCCAACATGCAGGCCGAAGGAGCGAGTGCTTTTCCCTCGGGAGTGTCTGTTGCCGGCACGTACGTGACACGTGCG CCGACTCGGAAAGGGAGGATTTCGCCGACGTCGTCCATCATCAGCGGCATGGATCCGCGCATGTTGCAGGAGCCG ATGGGCGGCGGATCCGGCATCCTGCCGATGGTGACGGCGCAGCGAGACCGGTTCAAAAAGAAGAACGCGCAGCTG GAGCAGGACCTGGGCGAGGCGCACAAAACCATGCGACAGCTGCGGCAGGAGGTGGCGGCCCTACAGAAGGACAAC CTGAACCTGTACGAGAAGACGCGCTACGTTTCGACATACAACCGAGGCGGGGCGACAGCATCGTCCTCGTCGGCC TACACGGCGAACCCTAACCCGTCGACGGTCTCGATGGGCGGGACTGGCAACCCCGGCATGTCGCTGGACCGTTAC CGTAAGGCATACGAGTCAAACCTATCGCCCTTTGCGGCTTTTCGGGGCCGCGAGTCGGCGAGGGCGTATCGAAGG ATGAGCTTCCCGGAGAGGGTTGTGTACTCGGTCACGAGGATGGTTCTGGCGTCCCGGGCGAGCAGGAACCTGTTT GCGGCGTATTGCGTCGCGCTGCACGTCCTGGTCTTCTTGTCGTTATACTGGCTCGGGCACTCAGACTTGGAGAGG CATGGCAGCAACTTTGGGTCGGCGGCGGCGGCGGCGGCGGCGGGGGGGGAACAGGGGGCTTCTTTGGCCAGGGGC GGCACAGATCACGGGCAATGGCAAGAGGACGGCTTCAACGGATAG |