Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7745
Gene name
Locationscaffold_787:53..1984
Strand-
Gene length (bp)1931
Transcript length (bp)1581
Coding sequence length (bp)1578
Protein length (aa) 526

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF17292 POB3_N POB3-like N-terminal PH domain 8.9E-29 6 97
PF03531 SSrecog Structure-specific recognition protein (SSRP1) 6.3E-29 104 190
PF08512 Rtt106 Histone chaperone Rttp106-like 8.8E-23 375 468

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7RWW0|POB3_NEUCR FACT complex subunit ctc-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ctc-1 PE=3 SV=1 1 518 0.0E+00
sp|Q4IJU0|POB3_GIBZE FACT complex subunit POB3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=POB3 PE=3 SV=1 1 491 0.0E+00
sp|Q2USL9|POB3_ASPOR FACT complex subunit pob3 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pob3 PE=3 SV=1 4 470 0.0E+00
sp|Q4WGK6|POB3_ASPFU FACT complex subunit pob3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pob3 PE=3 SV=2 1 506 0.0E+00
sp|Q5AYE3|POB3_EMENI FACT complex subunit pob3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pob3 PE=3 SV=2 4 518 0.0E+00
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Swissprot ID Swissprot Description Start End E-value
sp|Q7RWW0|POB3_NEUCR FACT complex subunit ctc-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ctc-1 PE=3 SV=1 1 518 0.0E+00
sp|Q4IJU0|POB3_GIBZE FACT complex subunit POB3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=POB3 PE=3 SV=1 1 491 0.0E+00
sp|Q2USL9|POB3_ASPOR FACT complex subunit pob3 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pob3 PE=3 SV=1 4 470 0.0E+00
sp|Q4WGK6|POB3_ASPFU FACT complex subunit pob3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pob3 PE=3 SV=2 1 506 0.0E+00
sp|Q5AYE3|POB3_EMENI FACT complex subunit pob3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pob3 PE=3 SV=2 4 518 0.0E+00
sp|O94529|POB3_SCHPO FACT complex subunit pob3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pob3 PE=3 SV=1 7 481 8.0E-155
sp|Q5ALL8|POB3_CANAL FACT complex subunit POB3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=POB3 PE=3 SV=1 7 483 1.0E-150
sp|Q6C7V4|POB3_YARLI FACT complex subunit POB3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=POB3 PE=3 SV=1 7 501 5.0E-149
sp|Q6BS60|POB3_DEBHA FACT complex subunit POB3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=POB3 PE=3 SV=1 7 483 9.0E-149
sp|Q04636|POB3_YEAST FACT complex subunit POB3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POB3 PE=1 SV=1 7 526 7.0E-137
sp|Q756X6|POB3_ASHGO FACT complex subunit POB3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=POB3 PE=3 SV=1 7 492 1.0E-136
sp|Q6CWD7|POB3_KLULA FACT complex subunit POB3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=POB3 PE=3 SV=1 7 515 8.0E-133
sp|Q6FKI2|POB3_CANGA FACT complex subunit POB3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=POB3 PE=3 SV=1 7 521 1.0E-131
sp|Q4P647|POB3_USTMA FACT complex subunit POB3 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=POB3 PE=3 SV=1 1 493 1.0E-131
sp|P0CR74|POB3_CRYNJ FACT complex subunit POB3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=POB3 PE=3 SV=1 6 503 5.0E-109
sp|P0CR75|POB3_CRYNB FACT complex subunit POB3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=POB3 PE=3 SV=1 6 503 5.0E-109
sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1 19 498 1.0E-83
sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1 7 500 2.0E-80
sp|Q05153|SSRP1_ARATH FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2 6 468 4.0E-79
sp|Q39601|SSRP1_CATRO FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1 19 498 2.0E-78
sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2 7 468 3.0E-78
sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1 1 468 4.0E-77
sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2 1 500 5.0E-77
sp|Q65WY8|SSP1B_ORYSJ FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica GN=SSRP1-B PE=2 SV=1 19 498 6.0E-77
sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2 1 500 8.0E-77
sp|Q293F6|SSRP1_DROPS FACT complex subunit Ssrp1 OS=Drosophila pseudoobscura pseudoobscura GN=Ssrp PE=3 SV=2 18 468 3.0E-76
sp|Q9LEF5|SSRP1_MAIZE FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1 19 491 6.0E-75
sp|Q05344|SSRP1_DROME FACT complex subunit Ssrp1 OS=Drosophila melanogaster GN=Ssrp PE=1 SV=2 18 468 1.0E-74
sp|Q9LGR0|SSP1A_ORYSJ FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1 19 498 1.0E-73
sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1 19 499 2.0E-69
sp|Q54G78|SSRP1_DICDI FACT complex subunit SSRP1 OS=Dictyostelium discoideum GN=ssrp1 PE=3 SV=1 4 477 5.0E-68
sp|P41848|SSP1A_CAEEL FACT complex subunit SSRP1-A OS=Caenorhabditis elegans GN=hmg-4 PE=3 SV=1 7 468 4.0E-61
sp|O01683|SSP1B_CAEEL FACT complex subunit ssrp1-B OS=Caenorhabditis elegans GN=hmg-3 PE=3 SV=1 1 493 3.0E-57
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7745
MTAIESFDGIYLDLSKESGKCRFAETGFGWKPAGGGETFTLDRSNVGGAQWSRAAKGYEVRILHRNSGIIQLDGF
QHADLDRLTKVFKNWYSTVLENKEHALRGWNWGKAEFSKAELTFNVQNKPALELPYSEIANTNLAGRNEVAVELS
LPQDANDTGTAGQGGARGKGKKAGAGRDQLVEMRFYIPGTATKKEAEGEEGGSDDAVEEHNAATLFYETLIEKAE
IGEMAGDTIASFLDVLHLTPRGRFDIDMYEASFRLRGKTYDYKIQYDAVKKFMVLPKPDDMHCMLCIGLDPPLRQ
GQTRYPFVVMQFKKDEEVTIDLNLDEADLHTKYKDKLEPHYEEPLHHVVAKIFRGLGNKKISSPAKDFITHRSQY
GIKCSIKASEGFLYCLEKAFMFVPKPATYIAYEQTQSITFSRVGGAVATLSTFDITVTMRGAITSSQQFSNINRE
DLKALEAFFKLKGLRVKNEIDEDANMLAAALREHGADDDDDDDDDDDHNGAPAGSAGKPSHRPDRGSADEDEESC
S
Coding >Ophio5|7745
ATGACGGCCATCGAGAGCTTCGACGGCATCTACCTCGACCTCTCGAAAGAGAGCGGCAAATGCCGCTTCGCTGAG
ACCGGCTTCGGCTGGAAACCCGCTGGAGGAGGCGAAACCTTCACCCTCGATCGTTCCAACGTCGGTGGAGCGCAA
TGGAGCCGGGCGGCAAAGGGTTACGAAGTTCGCATCCTCCATCGCAACTCGGGCATCATTCAGCTCGATGGCTTT
CAACACGCCGACCTCGATCGTCTCACAAAGGTCTTCAAGAACTGGTACAGCACCGTCCTCGAGAATAAGGAGCAT
GCGCTGCGCGGCTGGAACTGGGGCAAGGCCGAATTCTCCAAGGCGGAACTCACCTTCAACGTGCAGAATAAGCCT
GCGCTCGAACTGCCCTATTCCGAGATTGCCAATACCAACCTGGCCGGCCGAAATGAGGTGGCGGTCGAGTTGTCG
CTGCCGCAGGATGCCAACGACACTGGCACCGCTGGTCAGGGAGGCGCTCGCGGCAAAGGGAAGAAGGCTGGCGCC
GGGAGGGATCAGCTCGTCGAGATGCGCTTCTACATTCCCGGCACGGCCACCAAGAAGGAGGCTGAGGGTGAGGAA
GGCGGCAGTGACGACGCTGTAGAGGAACATAATGCCGCCACCCTCTTCTACGAGACGCTCATCGAAAAGGCCGAG
ATTGGCGAGATGGCCGGAGACACCATTGCTAGTTTCCTTGATGTCCTCCATCTCACCCCCAGAGGCCGCTTCGAC
ATCGACATGTACGAAGCTTCGTTCCGTCTCCGCGGCAAGACGTACGACTACAAGATCCAGTACGACGCCGTCAAG
AAGTTCATGGTGCTCCCCAAGCCCGACGACATGCACTGCATGCTCTGCATCGGTCTGGACCCGCCCCTCCGACAG
GGCCAGACTCGCTACCCCTTCGTCGTCATGCAGTTCAAAAAGGACGAGGAGGTCACCATCGATCTCAACCTCGAC
GAGGCGGACCTGCACACCAAGTACAAGGATAAGTTGGAGCCGCACTACGAAGAGCCCCTGCACCACGTCGTCGCC
AAGATCTTCCGCGGCCTCGGCAACAAGAAGATTTCCTCGCCGGCCAAGGACTTTATCACTCATCGCAGTCAGTAC
GGCATCAAATGCTCCATCAAAGCCAGCGAAGGCTTCCTCTACTGCCTCGAAAAAGCCTTCATGTTCGTGCCCAAG
CCGGCGACGTACATCGCCTACGAACAGACGCAATCCATCACCTTCTCCCGCGTCGGCGGCGCCGTCGCCACCCTC
TCCACCTTTGACATCACCGTCACCATGAGAGGCGCCATCACTTCATCCCAGCAATTCAGCAACATCAACCGCGAA
GACCTCAAAGCCCTCGAGGCCTTTTTCAAACTCAAGGGTTTGCGCGTCAAGAATGAAATCGACGAGGATGCGAAT
ATGCTCGCTGCCGCGTTACGCGAGCACGGCGCTGATGATGATGATGATGATGATGACGATGATGACCACAACGGC
GCTCCTGCTGGTTCGGCCGGCAAGCCTTCCCATAGGCCTGATCGCGGCTCCGCCGATGAGGATGAGGAGAGCTGC
TCA
Transcript >Ophio5|7745
ATGACGGCCATCGAGAGCTTCGACGGCATCTACCTCGACCTCTCGAAAGAGAGCGGCAAATGCCGCTTCGCTGAG
ACCGGCTTCGGCTGGAAACCCGCTGGAGGAGGCGAAACCTTCACCCTCGATCGTTCCAACGTCGGTGGAGCGCAA
TGGAGCCGGGCGGCAAAGGGTTACGAAGTTCGCATCCTCCATCGCAACTCGGGCATCATTCAGCTCGATGGCTTT
CAACACGCCGACCTCGATCGTCTCACAAAGGTCTTCAAGAACTGGTACAGCACCGTCCTCGAGAATAAGGAGCAT
GCGCTGCGCGGCTGGAACTGGGGCAAGGCCGAATTCTCCAAGGCGGAACTCACCTTCAACGTGCAGAATAAGCCT
GCGCTCGAACTGCCCTATTCCGAGATTGCCAATACCAACCTGGCCGGCCGAAATGAGGTGGCGGTCGAGTTGTCG
CTGCCGCAGGATGCCAACGACACTGGCACCGCTGGTCAGGGAGGCGCTCGCGGCAAAGGGAAGAAGGCTGGCGCC
GGGAGGGATCAGCTCGTCGAGATGCGCTTCTACATTCCCGGCACGGCCACCAAGAAGGAGGCTGAGGGTGAGGAA
GGCGGCAGTGACGACGCTGTAGAGGAACATAATGCCGCCACCCTCTTCTACGAGACGCTCATCGAAAAGGCCGAG
ATTGGCGAGATGGCCGGAGACACCATTGCTAGTTTCCTTGATGTCCTCCATCTCACCCCCAGAGGCCGCTTCGAC
ATCGACATGTACGAAGCTTCGTTCCGTCTCCGCGGCAAGACGTACGACTACAAGATCCAGTACGACGCCGTCAAG
AAGTTCATGGTGCTCCCCAAGCCCGACGACATGCACTGCATGCTCTGCATCGGTCTGGACCCGCCCCTCCGACAG
GGCCAGACTCGCTACCCCTTCGTCGTCATGCAGTTCAAAAAGGACGAGGAGGTCACCATCGATCTCAACCTCGAC
GAGGCGGACCTGCACACCAAGTACAAGGATAAGTTGGAGCCGCACTACGAAGAGCCCCTGCACCACGTCGTCGCC
AAGATCTTCCGCGGCCTCGGCAACAAGAAGATTTCCTCGCCGGCCAAGGACTTTATCACTCATCGCAGTCAGTAC
GGCATCAAATGCTCCATCAAAGCCAGCGAAGGCTTCCTCTACTGCCTCGAAAAAGCCTTCATGTTCGTGCCCAAG
CCGGCGACGTACATCGCCTACGAACAGACGCAATCCATCACCTTCTCCCGCGTCGGCGGCGCCGTCGCCACCCTC
TCCACCTTTGACATCACCGTCACCATGAGAGGCGCCATCACTTCATCCCAGCAATTCAGCAACATCAACCGCGAA
GACCTCAAAGCCCTCGAGGCCTTTTTCAAACTCAAGGGTTTGCGCGTCAAGAATGAAATCGACGAGGATGCGAAT
ATGCTCGCTGCCGCGTTACGCGAGCACGGCGCTGATGATGATGATGATGATGATGACGATGATGACCACAACGGC
GCTCCTGCTGGTTCGGCCGGCAAGCCTTCCCATAGGCCTGATCGCGGCTCCGCCGATGAGGATGAGGAGAGCTGC
TCATGA
Gene >Ophio5|7745
ATGACGGCCATGTGAGATTCAAATCCCCCTCAAATCTCCCTGCCTTTCCCCCTTCCCCCCCCAAAACCACAGCAT
CGTAACCTGACGCTTCCCTATCTAGCGAGAGCTTCGACGGCATCTACCTCGACCTCTCGAAAGAGAGCGGCAAAT
GCCGCTTCGCTGAGACCGGCTTCGGCTGGAAACCCGCTGGAGGAGGCGAAACCTTCACCCTCGATCGTTCCAACG
TCGGTGGAGCGCAATGGAGCCGGGCGGCAAAGGGTTACGAAGTTCGCATCCTCCATCGCAACTCGGGCATCATTC
AGCTCGATGGCTTTCAACACGCCGACCTCGATCGTCTCACAAAGGTCTTCAAGAACTGGTACAGCACCGTCCTCG
AGAATAAGGAGCATGCGCTGCGCGGCTGGAACTGGGGCAAGGCCGAATTCTCCAAGGCGGAACTCACCTTCAACG
TGCAGAATAAGCCTGCGCTCGAACTGCCCTATTCCGAGATTGCCAATACCAACCTGGCCGGCCGAAATGAGGTGG
CGGTCGAGTTGTCGCTGCCGCAGGATGCCAACGACACTGGCACCGCTGGTCAGGGAGGCGCTCGCGGCAAAGGGA
AGAAGGCTGGCGCCGGGAGGGATCAGCTCGTCGAGATGCGCTTCTACATTCCCGGCACGGCCACCAAGAAGGAGG
CTGAGGGTGAGGAAGGCGGCAGTGACGACGCTGTAGAGGAACATAATGCCGCCACCCTCTTCTACGAGACGCTCA
TCGAAAAGGCCGAGATTGGCGAGATGGCCGGAGACACCATTGCTAGTTTCCTTGATGTCCTCCATCTCACCCCCA
GGTCAGTCCTCTTTTTTTTTTTTTTTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCCCTCTCCCCCTCTCTTTTCCCCTTTCCTAAAAAGGCTGACAACCTCGATTCCTCAGAGGCCGCTTCGACA
TCGACATGTACGAAGCTTCGTTCCGTCTCCGCGGCAAGACGTACGACTACAAGATCCAGTACGACGCCGTCAAGA
AGTTCATGGTGCTCCCCAAGCCCGACGACATGCACTGCATGCTCTGCATCGGTCTGGACCCGCCCCTCCGACAGG
GCCAGACTCGCTACCCCTTCGTCGTCATGCAGTTCAAAAAGGACGAGGAGGTCACCATCGATCTCAACCTCGACG
AGGCGGACCTGCACACCAAGTACAAGGATAAGTTGGAGCCGCACTACGAAGAGCCCCTGCACCACGTCGTCGCCA
AGATCTTCCGCGGCCTCGGCAACAAGAAGATTTCCTCGCCGGCCAAGGACTTTATCACGTACGTTTTCCCTTTTT
TTTTTTCCCTTTATCCATCAGACAACGCAACTAAAAACCAAAAATAAAAACAGTCATCGCAGTCAGTACGGCATC
AAATGCTCCATCAAAGCCAGCGAAGGCTTCCTCTACTGCCTCGAAAAAGCCTTCATGTTCGTGCCCAAGCCGGCG
ACGTACATCGCCTACGAACAGACGCAATCCATCACCTTCTCCCGCGTCGGCGGCGCCGTCGCCACCCTCTCCACC
TTTGACATCACCGTCACCATGAGAGGCGCCATCACTTCATCCCAGCAATTCAGCAACATCAACCGCGAAGACCTC
AAAGCCCTCGAGGCCTTTTTCAAACTCAAGGGTTTGCGCGTCAAGAATGAAATCGACGAGGATGCGAATATGCTC
GCTGCCGCGTTACGCGAGCACGGCGCTGATGATGATGATGATGATGATGACGATGATGACCACAACGGCGCTCCT
GCTGGTTCGGCCGGCAAGCCTTCCCATAGGCCTGATCGCGGCTCCGCCGATGAGGATGAGGAGAGCGTCGATGAG
GACTTTCAGGCGGATAGTGATAGCGACGTCGCTGAGGAGTTTGATAGTGCTCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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