© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7688 |
| Gene name | |
| Location | scaffold_770:5440..6773 |
| Strand | - |
| Gene length (bp) | 1333 |
| Transcript length (bp) | 1209 |
| Coding sequence length (bp) | 1206 |
| Protein length (aa) | 402 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02116 | STE2 | Fungal pheromone mating factor STE2 GPCR | 5.1E-73 | 23 | 305 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004932 | mating-type factor pheromone receptor activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0007186 | G protein-coupled receptor signaling pathway | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0004888 | transmembrane signaling receptor activity | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0004930 | G protein-coupled receptor activity | No |
| GO:0065007 | biological regulation | No |
| GO:0007165 | signal transduction | No |
| GO:0038023 | signaling receptor activity | No |
| GO:0003674 | molecular_function | No |
| GO:0009987 | cellular process | No |
| GO:0005575 | cellular_component | No |
| GO:0050789 | regulation of biological process | No |
| GO:0060089 | molecular transducer activity | No |
| GO:0016503 | pheromone receptor activity | No |
| GO:0008528 | G protein-coupled peptide receptor activity | No |
| GO:0001653 | peptide receptor activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 101 | 123 | 22 |
| 3 | 138 | 160 | 22 |
| 4 | 173 | 195 | 22 |
| 5 | 215 | 237 | 22 |
| 6 | 258 | 280 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 6.24 | 1.81 | 10.67 |
| CcL | In ants, during behavior modification | 0.05 | 0.00 | 0.29 |
| CcD | In ants, recently dead | 0.05 | 0.00 | 0.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.274982 | no |
| SC16a | CcD | 0.264439 | no |
| CcL | CcD | 1.000000 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7688 MGLAPPAGSSFLSEFPSKPEAGFEPADQILAFYARDGKRLIGVPMSVVDNFNDESISMAVNYGALVGACIVTLAA LVVLTPLAKLRRPTAMMQMVALVICLVRGAFEISDFISPVIHFYVYWAGDYSGVPRGYIYKTLVGHFITMLANIA IEIILMNQAWTMVSLFPRTARMLLVVVSAIMALVAAGLRVTLTVSLVRADIVSASRASIKWIEQGALISSTVTIF WFCALFNAKLVLHLIANRGLLPSARKLSSMEILVMTNGLLMVIPVIFAGLEYGSFRNFEPALVTTTSVAVILPLG TLAAQRTNTPISGAGFDRPPNFSGSGSSAVKRIRAGLYHFRKQSVSSSSASPNSKCERSQAGLHAGTARVEDPYD LELRRIDSAGYPGIRIDQKLEQRYENV |
| Coding | >Ophio5|7688 ATGGGCCTCGCCCCGCCGGCTGGGTCCTCTTTCTTGTCCGAGTTCCCGTCCAAGCCCGAGGCCGGATTCGAGCCG GCCGATCAGATTCTCGCCTTCTACGCACGCGATGGTAAAAGGTTGATCGGCGTGCCCATGTCGGTGGTGGATAAC TTCAACGACGAGTCCATCAGCATGGCCGTCAACTATGGTGCCTTGGTCGGAGCCTGTATCGTGACGCTGGCAGCC CTGGTGGTGCTCACGCCGCTGGCCAAGCTTCGACGGCCCACGGCCATGATGCAAATGGTCGCTCTCGTCATTTGC CTCGTACGCGGCGCCTTTGAGATATCCGACTTTATCTCGCCCGTCATTCACTTCTACGTCTACTGGGCTGGCGAT TACTCGGGCGTTCCACGCGGTTACATATACAAGACTCTGGTCGGCCACTTCATCACTATGCTGGCCAATATCGCC ATCGAGATTATCCTCATGAACCAGGCTTGGACCATGGTTTCGCTTTTCCCCAGGACGGCGAGGATGCTGCTGGTC GTTGTGTCGGCCATCATGGCCCTGGTTGCTGCCGGCCTGCGTGTTACCCTTACCGTCTCGCTGGTTCGCGCCGAC ATAGTCTCTGCCTCTCGGGCATCGATTAAATGGATTGAGCAAGGTGCTCTCATTTCCAGTACCGTCACCATCTTC TGGTTCTGCGCCTTGTTCAACGCCAAGTTGGTTCTCCATCTCATCGCCAACCGCGGCCTGCTGCCCTCGGCTCGG AAGCTGAGCTCCATGGAGATTCTCGTCATGACCAACGGACTCCTCATGGTCATCCCAGTCATCTTCGCCGGCCTC GAATACGGCAGCTTCCGCAACTTCGAACCCGCCCTCGTCACCACCACGTCCGTCGCCGTCATCCTTCCCCTCGGC ACCTTGGCCGCCCAGCGCACAAACACGCCCATCAGCGGTGCCGGCTTCGACCGCCCGCCTAACTTCTCGGGAAGC GGCTCCTCCGCCGTCAAACGGATCCGCGCCGGCCTCTACCACTTTCGAAAGCAGAGTGTGTCCAGCAGCTCGGCA TCACCAAACTCCAAGTGCGAGCGTAGCCAGGCCGGTCTCCATGCCGGGACCGCTCGCGTCGAAGACCCCTACGAT CTGGAGCTACGCCGCATAGACTCGGCTGGCTATCCGGGCATCCGCATCGACCAGAAGCTGGAGCAGCGGTACGAG AACGTC |
| Transcript | >Ophio5|7688 ATGGGCCTCGCCCCGCCGGCTGGGTCCTCTTTCTTGTCCGAGTTCCCGTCCAAGCCCGAGGCCGGATTCGAGCCG GCCGATCAGATTCTCGCCTTCTACGCACGCGATGGTAAAAGGTTGATCGGCGTGCCCATGTCGGTGGTGGATAAC TTCAACGACGAGTCCATCAGCATGGCCGTCAACTATGGTGCCTTGGTCGGAGCCTGTATCGTGACGCTGGCAGCC CTGGTGGTGCTCACGCCGCTGGCCAAGCTTCGACGGCCCACGGCCATGATGCAAATGGTCGCTCTCGTCATTTGC CTCGTACGCGGCGCCTTTGAGATATCCGACTTTATCTCGCCCGTCATTCACTTCTACGTCTACTGGGCTGGCGAT TACTCGGGCGTTCCACGCGGTTACATATACAAGACTCTGGTCGGCCACTTCATCACTATGCTGGCCAATATCGCC ATCGAGATTATCCTCATGAACCAGGCTTGGACCATGGTTTCGCTTTTCCCCAGGACGGCGAGGATGCTGCTGGTC GTTGTGTCGGCCATCATGGCCCTGGTTGCTGCCGGCCTGCGTGTTACCCTTACCGTCTCGCTGGTTCGCGCCGAC ATAGTCTCTGCCTCTCGGGCATCGATTAAATGGATTGAGCAAGGTGCTCTCATTTCCAGTACCGTCACCATCTTC TGGTTCTGCGCCTTGTTCAACGCCAAGTTGGTTCTCCATCTCATCGCCAACCGCGGCCTGCTGCCCTCGGCTCGG AAGCTGAGCTCCATGGAGATTCTCGTCATGACCAACGGACTCCTCATGGTCATCCCAGTCATCTTCGCCGGCCTC GAATACGGCAGCTTCCGCAACTTCGAACCCGCCCTCGTCACCACCACGTCCGTCGCCGTCATCCTTCCCCTCGGC ACCTTGGCCGCCCAGCGCACAAACACGCCCATCAGCGGTGCCGGCTTCGACCGCCCGCCTAACTTCTCGGGAAGC GGCTCCTCCGCCGTCAAACGGATCCGCGCCGGCCTCTACCACTTTCGAAAGCAGAGTGTGTCCAGCAGCTCGGCA TCACCAAACTCCAAGTGCGAGCGTAGCCAGGCCGGTCTCCATGCCGGGACCGCTCGCGTCGAAGACCCCTACGAT CTGGAGCTACGCCGCATAGACTCGGCTGGCTATCCGGGCATCCGCATCGACCAGAAGCTGGAGCAGCGGTACGAG AACGTCTAG |
| Gene | >Ophio5|7688 ATGGGCCTCGCCCCGCCGGCTGGGTCCTCTTTCTTGTCCGAGTTCCCGTCCAAGCCCGAGGCCGGATTCGAGCCG GCCGATCAGATTCTCGCCTTCTACGCACGCGATGGTAAAAGGTTGATCGGCGTGCCCATGTCGGTGGTGGATAAC TTCAACGACGAGTCCATCAGCATGGCCGTCAACTATGGTGCCTTGGTCGGAGCCTGTATCGTGACGCTGGCAGCC CTGGTGGTGCTCACGCCGCTGGCCAAGCTTCGACGGCCCACGGCCATGATGCAAATGGTCGCTCTCGTCATTTGC CTCGTACGCGGCGCCTTTGAGATATCCGACTTTATCTCGCCCGTCATTCACTTCTACGTCTACTGGGCTGGCGAT TACTCGGGCGTTCCACGCGGTTACATATACAAGACTCTGGTCGGCCACTTCATCACTATGCTGGCCAATATCGCC ATCGAGATTATCCTCATGAACCAGGCTTGGACCATGGTTTCGCTTTTCCCCAGGACGGCGAGGATGCTGCTGGTC GTTGTGTCGGCCATCATGGCCCTGGTTGCTGCCGGCCTGCGTGTTACCCTTACCGTCTCGCTGGTTCGCGCCGAC ATAGTCTCTGCCTCTCGGGCATCGATTAAATGGATTGAGCAAGGTGCTCTCATTTCCAGTACCGTCACCATCTTC TGGTTCTGCGCCTTGTTCAACGCCAAGTTGGTTCTCCATCTCATCGCCAACCGCGGCCTGCTGCCCTCGGCTCGG AAGCTGAGCTCCATGGAGATTCTCGTCATGACCAACGGACTCCTCATGGTCATCCCAGGTATTCCTCTCCTCCTG CTCACTCCTCCCCCCCCCCCCTCCTCCCCCCTTTTGAAAAATAGTTTTATGAAGAAGAAGAAGAAGAAGAAGAAG AAGAAGAAGAAGCTCTCCTCTAACTGATACAGTCATCTTCGCCGGCCTCGAATACGGCAGCTTCCGCAACTTCGA ACCCGCCCTCGTCACCACCACGTCCGTCGCCGTCATCCTTCCCCTCGGCACCTTGGCCGCCCAGCGCACAAACAC GCCCATCAGCGGTGCCGGCTTCGACCGCCCGCCTAACTTCTCGGGAAGCGGCTCCTCCGCCGTCAAACGGATCCG CGCCGGCCTCTACCACTTTCGAAAGCAGAGTGTGTCCAGCAGCTCGGCATCACCAAACTCCAAGTGCGAGCGTAG CCAGGCCGGTCTCCATGCCGGGACCGCTCGCGTCGAAGACCCCTACGATCTGGAGCTACGCCGCATAGACTCGGC TGGCTATCCGGGCATCCGCATCGACCAGAAGCTGGAGCAGCGGTACGAGAACGTCTAG |