© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7668 |
| Gene name | |
| Location | scaffold_767:1003..2470 |
| Strand | - |
| Gene length (bp) | 1467 |
| Transcript length (bp) | 1176 |
| Coding sequence length (bp) | 1173 |
| Protein length (aa) | 391 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07798 | CCDC90-like | Coiled-coil domain-containing protein 90-like | 8.9E-48 | 173 | 347 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O42997|YBC7_SCHPO | Uncharacterized protein C27B12.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pi071 PE=4 SV=1 | 171 | 360 | 4.0E-10 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 331 | 350 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 84.28 | 46.11 | 122.45 |
| CcL | In ants, during behavior modification | 97.57 | 53.92 | 141.22 |
| CcD | In ants, recently dead | 86.49 | 47.54 | 125.44 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.568825 | no |
| SC16a | CcD | 0.927939 | no |
| CcL | CcD | 0.641041 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7668 MATGRLALIRLARWRGRPLDSRRAEASFAPRHGKAVEPARGSVVEAGTRKRDKEEESRREGEESKRGEESGTTIQ PGEREQDKMTAQTRRGEEDKKTTQARGDDRTRKPTSSNKAADTSNVEPAGASGQLLPALDAHDAHDAHDRVKKPL EMMILKKTRCQPQMAAPPYVHHFDSYSLVKQLQGGGYTQQQATTAMKGIRTLLAQNLDVAQESLVSKSDVENESY LFTAACSELSTEIKNNRRLQHEQTRQQRTVLQHEVDILTQTLNQELLTLNDNVRGMFNDRTMAVREEQKAVESAI QKINYKMSILLSSDCKSEIEGVRWILIRRSVLGILFMAMLALAVLRYASYKSQQHRRQAEEVKEAREQLRRDGGR SDHSAAADAAAMLAAG |
| Coding | >Ophio5|7668 ATGGCGACGGGCAGGCTGGCCCTGATACGGCTCGCGCGGTGGCGGGGACGGCCGCTGGACTCGCGGCGCGCAGAA GCGTCGTTTGCGCCGCGGCATGGAAAGGCGGTTGAGCCGGCGAGGGGGTCCGTCGTCGAAGCGGGGACGAGGAAG CGGGACAAGGAGGAGGAGTCGAGGCGAGAGGGGGAGGAGTCGAAGCGAGGAGAGGAGAGCGGGACGACGATACAG CCTGGTGAACGTGAGCAGGACAAGATGACGGCGCAGACTCGACGAGGCGAGGAAGACAAGAAGACGACACAAGCT CGTGGCGACGACAGGACGAGAAAGCCGACGTCGTCCAACAAGGCAGCCGATACGAGTAACGTCGAACCGGCTGGG GCCTCGGGCCAGCTCCTGCCCGCCCTCGACGCCCACGACGCCCACGACGCCCACGACCGGGTCAAGAAGCCGCTC GAGATGATGATACTGAAGAAGACGCGATGCCAACCGCAGATGGCGGCGCCTCCGTACGTGCACCATTTCGACAGC TACTCGCTCGTCAAGCAGCTACAGGGGGGCGGATACACGCAGCAGCAGGCGACGACGGCCATGAAGGGGATTCGC ACGCTGCTCGCGCAGAATCTCGACGTTGCGCAGGAGAGTTTGGTGAGCAAGAGTGATGTTGAAAATGAAAGCTAC CTCTTCACGGCCGCTTGTTCCGAGTTGAGCACCGAGATCAAGAATAATCGCCGGCTGCAGCATGAGCAGACGAGG CAGCAGAGGACGGTGCTGCAGCACGAGGTGGACATTTTGACGCAGACGCTCAACCAGGAACTGCTGACGTTGAAT GACAACGTGCGCGGCATGTTTAACGATCGGACCATGGCGGTGAGGGAGGAGCAGAAGGCGGTTGAGAGTGCGATT CAAAAAATCAACTACAAGATGAGCATCCTGCTCAGCAGCGACTGCAAGTCGGAAATCGAAGGGGTGCGATGGATC CTGATCCGGCGCTCCGTCCTCGGCATCCTCTTCATGGCCATGCTGGCCCTCGCCGTCCTGCGCTACGCCTCGTAC AAGTCGCAGCAGCACAGGAGGCAGGCCGAGGAGGTCAAGGAGGCGAGGGAGCAGCTGCGCAGGGACGGTGGCCGG TCCGATCATAGCGCTGCGGCGGATGCGGCTGCCATGCTGGCGGCTGGG |
| Transcript | >Ophio5|7668 ATGGCGACGGGCAGGCTGGCCCTGATACGGCTCGCGCGGTGGCGGGGACGGCCGCTGGACTCGCGGCGCGCAGAA GCGTCGTTTGCGCCGCGGCATGGAAAGGCGGTTGAGCCGGCGAGGGGGTCCGTCGTCGAAGCGGGGACGAGGAAG CGGGACAAGGAGGAGGAGTCGAGGCGAGAGGGGGAGGAGTCGAAGCGAGGAGAGGAGAGCGGGACGACGATACAG CCTGGTGAACGTGAGCAGGACAAGATGACGGCGCAGACTCGACGAGGCGAGGAAGACAAGAAGACGACACAAGCT CGTGGCGACGACAGGACGAGAAAGCCGACGTCGTCCAACAAGGCAGCCGATACGAGTAACGTCGAACCGGCTGGG GCCTCGGGCCAGCTCCTGCCCGCCCTCGACGCCCACGACGCCCACGACGCCCACGACCGGGTCAAGAAGCCGCTC GAGATGATGATACTGAAGAAGACGCGATGCCAACCGCAGATGGCGGCGCCTCCGTACGTGCACCATTTCGACAGC TACTCGCTCGTCAAGCAGCTACAGGGGGGCGGATACACGCAGCAGCAGGCGACGACGGCCATGAAGGGGATTCGC ACGCTGCTCGCGCAGAATCTCGACGTTGCGCAGGAGAGTTTGGTGAGCAAGAGTGATGTTGAAAATGAAAGCTAC CTCTTCACGGCCGCTTGTTCCGAGTTGAGCACCGAGATCAAGAATAATCGCCGGCTGCAGCATGAGCAGACGAGG CAGCAGAGGACGGTGCTGCAGCACGAGGTGGACATTTTGACGCAGACGCTCAACCAGGAACTGCTGACGTTGAAT GACAACGTGCGCGGCATGTTTAACGATCGGACCATGGCGGTGAGGGAGGAGCAGAAGGCGGTTGAGAGTGCGATT CAAAAAATCAACTACAAGATGAGCATCCTGCTCAGCAGCGACTGCAAGTCGGAAATCGAAGGGGTGCGATGGATC CTGATCCGGCGCTCCGTCCTCGGCATCCTCTTCATGGCCATGCTGGCCCTCGCCGTCCTGCGCTACGCCTCGTAC AAGTCGCAGCAGCACAGGAGGCAGGCCGAGGAGGTCAAGGAGGCGAGGGAGCAGCTGCGCAGGGACGGTGGCCGG TCCGATCATAGCGCTGCGGCGGATGCGGCTGCCATGCTGGCGGCTGGGTGA |
| Gene | >Ophio5|7668 ATGGCGACGGGCAGGCTGGCCCTGATACGGCTCGCGCGGTGGCGGGGACGGCCGCTGGACTCGCGGCGCGCAGAA GCGTCGTTTGCGCCGCGGCATGGAAAGGCGGTTGAGCCGGCGAGGGGGTCCGTCGTCGAAGCGGGGACGAGGAAG CGGGACAAGGAGGAGGAGTCGAGGCGAGAGGGGGAGGAGTCGAAGCGAGGAGAGGAGAGCGGGACGACGATACAG CCTGGTGAACGTGAGCAGGACAAGATGACGGCGCAGACTCGACGAGGCGAGGAAGACAAGAAGACGACACAAGCT CGTGGCGACGACAGGACGAGAAAGCCGACGTCGTCCAACAAGGCAGCCGATACGAGTAACGTCGAACCGGCTGGG GCCTCGGGCCAGCTCCTGCCCGCCCTCGACGCCCACGACGCCCACGACGCCCACGACCGGGTCAAGAAGCCGCTC GAGATGATGATACTGAAGAAGACGCGATGCCAACCGCAGATGGCGGCGCCTCCGTACGTGCACCATTTCGACAGC TACTCGCTCGTCAAGCAGCTACAGGGGGGCGGATACACGCAGCAGCAGGCGACGACGGCCATGAAGGGGATTCGC ACGCTGCTCGCGCAGAATCTCGACGTTGCGCAGGAGAGTTTGGTGAGCAAGAGTGATGTTGAAAATGTGCGTGGT TTTTTTTTGTTTTTTTTTTCTTACATCTTGTTCCTCCTCTACTGTACACTTCTACTCTTTTCCCACTCTACTTTT GACCCTCTCTTGTCTGTTGTCGGAAGAAAAAAAAAATGCTAAGACAAAAAGGGGGGAGGGGGGAAGGGGAGGGTG GAAGAGAAAGTAGGAAAGCTACCTCTTCACGGCCGCTTGTTCCGAGTTGAGCACCGAGATCAAGAATAATCGCCG GCTGCAGCATGAGCAGACGAGGCAGCAGAGGACGGTGCTGCAGCACGAGGTGGACATTTTGACGCAGACGCTCAA CCAGGAACTGCTGACGTTGAATGACAACGTGCGCGGCATGTTTAACGATCGGACCATGGCGGTGAGGGAGGAGCA GAAGGCGGTTGAGAGTGCGGTATGTCTTTTTCTATTCTCTTTTCTCTCTCTCTCTCTCTTTTTCTCTTCTTTTCC TTTCTTTTCTATTACACCCCCTCCCGGTGAGTGAGAGGACTGGGTGTTGACGCGCCAAGACAGATTCAAAAAATC AACTACAAGATGAGCATCCTGCTCAGCAGCGACTGCAAGTCGGAAATCGAAGGGGTGCGATGGATCCTGATCCGG CGCTCCGTCCTCGGCATCCTCTTCATGGCCATGCTGGCCCTCGCCGTCCTGCGCTACGCCTCGTACAAGTCGCAG CAGCACAGGAGGCAGGCCGAGGAGGTCAAGGAGGCGAGGGAGCAGCTGCGCAGGGACGGTGGCCGGTCCGATCAT AGCGCTGCGGCGGATGCGGCTGCCATGCTGGCGGCTGGGTGA |