Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|7657
Gene name
Location	scaffold_762:3567..4626
Strand	-
Gene length (bp)	1059
Transcript length (bp)	807
Coding sequence length (bp)	804
Protein length (aa)	268

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF02656	DUF202	Domain of unknown function (DUF202)	3.1E-21	139	217

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 29	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	149	171	22
2	193	210	17
3	231	253	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	71.81	37.50	106.12
CcL	In ants, during behavior modification	118.86	59.48	178.25
CcD	In ants, recently dead	93.23	50.41	136.05

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.031173	yes
SC16a	CcD	0.278738	no
CcL	CcD	0.338374	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|7657 MAGSEPLTAPARLEQVDDDDMRAAPTSARPPSRAVSISQSTSSRIDDILQTGRARAESRGQHDDWMPVASRGSAP SVVALQPPKSSSVYRRRTHDHRTADPVLAEVLGDEDGGVDGPWWREMLGRFQSVELENHGSVARDHLALERTFLA WLRTSLAFASIGVAVTQLFRLNTSLSDVGEGVDSLTLRRMGKPLGATFLAISILTLLLGFRRYFHGQEWVMKGKF PASRGTIVVVAILALAIMLVSLVVVIVIQPTEERAREAVRLDL
Coding	>Ophio5\|7657 ATGGCCGGGTCCGAGCCTCTCACGGCTCCGGCGCGCCTCGAGCAAGTCGACGATGACGACATGCGGGCCGCACCG ACCAGCGCCAGACCCCCGAGCCGGGCCGTTTCGATTTCGCAGTCGACGAGCTCGCGCATCGACGACATCTTGCAG ACCGGACGCGCCCGGGCCGAGAGTCGCGGACAGCACGACGATTGGATGCCCGTGGCGTCGCGCGGTTCCGCCCCG AGCGTCGTGGCGCTGCAGCCGCCCAAGTCGTCTTCCGTTTATCGGCGCCGCACGCACGACCATCGGACGGCTGAT CCGGTGCTGGCGGAAGTCCTGGGGGATGAAGACGGCGGCGTCGATGGACCTTGGTGGAGGGAGATGCTCGGCAGG TTTCAGTCGGTGGAGCTCGAGAATCACGGCAGCGTGGCTAGAGATCACCTGGCACTCGAACGCACCTTTCTCGCC TGGCTGCGGACCTCGCTCGCGTTCGCGTCCATCGGCGTCGCCGTCACGCAACTATTTCGGCTCAACACGTCTCTC TCCGACGTGGGCGAGGGCGTCGACTCGTTGACGCTGCGACGGATGGGCAAGCCTCTGGGGGCGACGTTCCTGGCC ATCAGCATACTGACGCTGTTGCTGGGCTTCCGAAGATACTTCCACGGGCAGGAATGGGTTATGAAGGGCAAGTTT CCGGCGAGTAGGGGAACGATTGTCGTTGTGGCCATTCTGGCGCTGGCCATCATGTTGGTGTCGCTGGTGGTGGTG ATTGTCATTCAGCCGACGGAGGAGCGGGCGAGGGAGGCCGTGAGGTTGGATCTG
Transcript	>Ophio5\|7657 ATGGCCGGGTCCGAGCCTCTCACGGCTCCGGCGCGCCTCGAGCAAGTCGACGATGACGACATGCGGGCCGCACCG ACCAGCGCCAGACCCCCGAGCCGGGCCGTTTCGATTTCGCAGTCGACGAGCTCGCGCATCGACGACATCTTGCAG ACCGGACGCGCCCGGGCCGAGAGTCGCGGACAGCACGACGATTGGATGCCCGTGGCGTCGCGCGGTTCCGCCCCG AGCGTCGTGGCGCTGCAGCCGCCCAAGTCGTCTTCCGTTTATCGGCGCCGCACGCACGACCATCGGACGGCTGAT CCGGTGCTGGCGGAAGTCCTGGGGGATGAAGACGGCGGCGTCGATGGACCTTGGTGGAGGGAGATGCTCGGCAGG TTTCAGTCGGTGGAGCTCGAGAATCACGGCAGCGTGGCTAGAGATCACCTGGCACTCGAACGCACCTTTCTCGCC TGGCTGCGGACCTCGCTCGCGTTCGCGTCCATCGGCGTCGCCGTCACGCAACTATTTCGGCTCAACACGTCTCTC TCCGACGTGGGCGAGGGCGTCGACTCGTTGACGCTGCGACGGATGGGCAAGCCTCTGGGGGCGACGTTCCTGGCC ATCAGCATACTGACGCTGTTGCTGGGCTTCCGAAGATACTTCCACGGGCAGGAATGGGTTATGAAGGGCAAGTTT CCGGCGAGTAGGGGAACGATTGTCGTTGTGGCCATTCTGGCGCTGGCCATCATGTTGGTGTCGCTGGTGGTGGTG ATTGTCATTCAGCCGACGGAGGAGCGGGCGAGGGAGGCCGTGAGGTTGGATCTGTAG
Gene	>Ophio5\|7657 ATGGCCGGGTCCGAGCCTCTCACGGCTCCGGCGCGCCTCGAGCAAGTCGACGATGACGACATGCGGGCCGCACCG ACCAGCGCCAGACCCCCGAGCCGGGCCGTTTCGATTTCGCAGTCGACGAGCTCGCGCATCGACGACATCTTGCAG GTGCTGTAACGTACACGTCTAGATGCCTACCTACCTACCTATCTACCTACCTACCTACCTACCTAGGTAGGAAGA GAGGTAGGTAGGTAGGTAGGTAGGTAGGTACATGATCGGACAGAGTGGGCTAACACACACGACGGCGCCGCCAGA CCGGACGCGCCCGGGCCGAGAGTCGCGGACAGCACGACGATTGGATGCCCGTGGCGTCGCGCGGTTCCGCCCCGA GCGTCGTGGCGCTGCAGCCGCCCAAGTCGTCTTCCGTTTATCGGCGCCGCACGCACGACCATCGGACGGCTGATC CGGTGCTGGCGGAAGTCCTGGGGGATGAAGACGGCGGCGTCGATGGACCTTGGTGGAGGGAGATGCTCGGCAGGT TTCAGTCGGTGGAGCTCGAGAATCACGGCAGCGTGGCTAGAGATCACCTGGCACTCGGTGCGAATACCTACCTAC CTACCTACCTACCTACCTACCTAAGGAAATCATACCTACCTACCTAGCTACCGTACACGCGCTGACCCGGCCGAC CGATTGTCAGAACGCACCTTTCTCGCCTGGCTGCGGACCTCGCTCGCGTTCGCGTCCATCGGCGTCGCCGTCACG CAACTATTTCGGCTCAACACGTCTCTCTCCGACGTGGGCGAGGGCGTCGACTCGTTGACGCTGCGACGGATGGGC AAGCCTCTGGGGGCGACGTTCCTGGCCATCAGCATACTGACGCTGTTGCTGGGCTTCCGAAGATACTTCCACGGG CAGGAATGGGTTATGAAGGGCAAGTTTCCGGCGAGTAGGGGAACGATTGTCGTTGTGGCCATTCTGGCGCTGGCC ATCATGTTGGTGTCGCTGGTGGTGGTGATTGTCATTCAGCCGACGGAGGAGCGGGCGAGGGAGGCCGTGAGGTTG GATCTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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