© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7657 |
| Gene name | |
| Location | scaffold_762:3567..4626 |
| Strand | - |
| Gene length (bp) | 1059 |
| Transcript length (bp) | 807 |
| Coding sequence length (bp) | 804 |
| Protein length (aa) | 268 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02656 | DUF202 | Domain of unknown function (DUF202) | 3.1E-21 | 139 | 217 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Transmembrane domain | 0.0587 | 0.1141 | 0.0279 | 0.3151 | 0.1893 | 0.0053 | 0.2333 | 0.7214 | 0.5081 | 0.0116 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 149 | 171 | 22 |
| 2 | 193 | 210 | 17 |
| 3 | 231 | 253 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5154 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7657 MAGSEPLTAPARLEQVDDDDMRAAPTSARPPSRAVSISQSTSSRIDDILQTGRARAESRGQHDDWMPVASRGSAP SVVALQPPKSSSVYRRRTHDHRTADPVLAEVLGDEDGGVDGPWWREMLGRFQSVELENHGSVARDHLALERTFLA WLRTSLAFASIGVAVTQLFRLNTSLSDVGEGVDSLTLRRMGKPLGATFLAISILTLLLGFRRYFHGQEWVMKGKF PASRGTIVVVAILALAIMLVSLVVVIVIQPTEERAREAVRLDL |
| Coding | >Ophio5|7657 ATGGCCGGGTCCGAGCCTCTCACGGCTCCGGCGCGCCTCGAGCAAGTCGACGATGACGACATGCGGGCCGCACCG ACCAGCGCCAGACCCCCGAGCCGGGCCGTTTCGATTTCGCAGTCGACGAGCTCGCGCATCGACGACATCTTGCAG ACCGGACGCGCCCGGGCCGAGAGTCGCGGACAGCACGACGATTGGATGCCCGTGGCGTCGCGCGGTTCCGCCCCG AGCGTCGTGGCGCTGCAGCCGCCCAAGTCGTCTTCCGTTTATCGGCGCCGCACGCACGACCATCGGACGGCTGAT CCGGTGCTGGCGGAAGTCCTGGGGGATGAAGACGGCGGCGTCGATGGACCTTGGTGGAGGGAGATGCTCGGCAGG TTTCAGTCGGTGGAGCTCGAGAATCACGGCAGCGTGGCTAGAGATCACCTGGCACTCGAACGCACCTTTCTCGCC TGGCTGCGGACCTCGCTCGCGTTCGCGTCCATCGGCGTCGCCGTCACGCAACTATTTCGGCTCAACACGTCTCTC TCCGACGTGGGCGAGGGCGTCGACTCGTTGACGCTGCGACGGATGGGCAAGCCTCTGGGGGCGACGTTCCTGGCC ATCAGCATACTGACGCTGTTGCTGGGCTTCCGAAGATACTTCCACGGGCAGGAATGGGTTATGAAGGGCAAGTTT CCGGCGAGTAGGGGAACGATTGTCGTTGTGGCCATTCTGGCGCTGGCCATCATGTTGGTGTCGCTGGTGGTGGTG ATTGTCATTCAGCCGACGGAGGAGCGGGCGAGGGAGGCCGTGAGGTTGGATCTG |
| Transcript | >Ophio5|7657 ATGGCCGGGTCCGAGCCTCTCACGGCTCCGGCGCGCCTCGAGCAAGTCGACGATGACGACATGCGGGCCGCACCG ACCAGCGCCAGACCCCCGAGCCGGGCCGTTTCGATTTCGCAGTCGACGAGCTCGCGCATCGACGACATCTTGCAG ACCGGACGCGCCCGGGCCGAGAGTCGCGGACAGCACGACGATTGGATGCCCGTGGCGTCGCGCGGTTCCGCCCCG AGCGTCGTGGCGCTGCAGCCGCCCAAGTCGTCTTCCGTTTATCGGCGCCGCACGCACGACCATCGGACGGCTGAT CCGGTGCTGGCGGAAGTCCTGGGGGATGAAGACGGCGGCGTCGATGGACCTTGGTGGAGGGAGATGCTCGGCAGG TTTCAGTCGGTGGAGCTCGAGAATCACGGCAGCGTGGCTAGAGATCACCTGGCACTCGAACGCACCTTTCTCGCC TGGCTGCGGACCTCGCTCGCGTTCGCGTCCATCGGCGTCGCCGTCACGCAACTATTTCGGCTCAACACGTCTCTC TCCGACGTGGGCGAGGGCGTCGACTCGTTGACGCTGCGACGGATGGGCAAGCCTCTGGGGGCGACGTTCCTGGCC ATCAGCATACTGACGCTGTTGCTGGGCTTCCGAAGATACTTCCACGGGCAGGAATGGGTTATGAAGGGCAAGTTT CCGGCGAGTAGGGGAACGATTGTCGTTGTGGCCATTCTGGCGCTGGCCATCATGTTGGTGTCGCTGGTGGTGGTG ATTGTCATTCAGCCGACGGAGGAGCGGGCGAGGGAGGCCGTGAGGTTGGATCTGTAG |
| Gene | >Ophio5|7657 ATGGCCGGGTCCGAGCCTCTCACGGCTCCGGCGCGCCTCGAGCAAGTCGACGATGACGACATGCGGGCCGCACCG ACCAGCGCCAGACCCCCGAGCCGGGCCGTTTCGATTTCGCAGTCGACGAGCTCGCGCATCGACGACATCTTGCAG GTGCTGTAACGTACACGTCTAGATGCCTACCTACCTACCTATCTACCTACCTACCTACCTACCTAGGTAGGAAGA GAGGTAGGTAGGTAGGTAGGTAGGTAGGTACATGATCGGACAGAGTGGGCTAACACACACGACGGCGCCGCCAGA CCGGACGCGCCCGGGCCGAGAGTCGCGGACAGCACGACGATTGGATGCCCGTGGCGTCGCGCGGTTCCGCCCCGA GCGTCGTGGCGCTGCAGCCGCCCAAGTCGTCTTCCGTTTATCGGCGCCGCACGCACGACCATCGGACGGCTGATC CGGTGCTGGCGGAAGTCCTGGGGGATGAAGACGGCGGCGTCGATGGACCTTGGTGGAGGGAGATGCTCGGCAGGT TTCAGTCGGTGGAGCTCGAGAATCACGGCAGCGTGGCTAGAGATCACCTGGCACTCGGTGCGAATACCTACCTAC CTACCTACCTACCTACCTACCTAAGGAAATCATACCTACCTACCTAGCTACCGTACACGCGCTGACCCGGCCGAC CGATTGTCAGAACGCACCTTTCTCGCCTGGCTGCGGACCTCGCTCGCGTTCGCGTCCATCGGCGTCGCCGTCACG CAACTATTTCGGCTCAACACGTCTCTCTCCGACGTGGGCGAGGGCGTCGACTCGTTGACGCTGCGACGGATGGGC AAGCCTCTGGGGGCGACGTTCCTGGCCATCAGCATACTGACGCTGTTGCTGGGCTTCCGAAGATACTTCCACGGG CAGGAATGGGTTATGAAGGGCAAGTTTCCGGCGAGTAGGGGAACGATTGTCGTTGTGGCCATTCTGGCGCTGGCC ATCATGTTGGTGTCGCTGGTGGTGGTGATTGTCATTCAGCCGACGGAGGAGCGGGCGAGGGAGGCCGTGAGGTTG GATCTGTAG |