© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7644 |
| Gene name | |
| Location | scaffold_76:32277..33987 |
| Strand | + |
| Gene length (bp) | 1710 |
| Transcript length (bp) | 1602 |
| Coding sequence length (bp) | 1599 |
| Protein length (aa) | 533 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01398 | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 3.2E-13 | 355 | 460 |
| PF08969 | USP8_dimer | USP8 dimerisation domain | 2.5E-07 | 16 | 117 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P371|SST2_SCHPO | AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst2 PE=1 SV=1 | 341 | 533 | 1.0E-51 |
| sp|O95630|STABP_HUMAN | STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1 | 317 | 504 | 2.0E-41 |
| sp|Q6TH47|STBPA_DANRE | STAM-binding protein-like A OS=Danio rerio GN=stambpa PE=2 SV=3 | 321 | 504 | 1.0E-40 |
| sp|Q8R424|STABP_RAT | STAM-binding protein OS=Rattus norvegicus GN=Stambp PE=2 SV=1 | 298 | 504 | 3.0E-40 |
| sp|Q9CQ26|STABP_MOUSE | STAM-binding protein OS=Mus musculus GN=Stambp PE=1 SV=1 | 312 | 504 | 4.0E-39 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P371|SST2_SCHPO | AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst2 PE=1 SV=1 | 341 | 533 | 1.0E-51 |
| sp|O95630|STABP_HUMAN | STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1 | 317 | 504 | 2.0E-41 |
| sp|Q6TH47|STBPA_DANRE | STAM-binding protein-like A OS=Danio rerio GN=stambpa PE=2 SV=3 | 321 | 504 | 1.0E-40 |
| sp|Q8R424|STABP_RAT | STAM-binding protein OS=Rattus norvegicus GN=Stambp PE=2 SV=1 | 298 | 504 | 3.0E-40 |
| sp|Q9CQ26|STABP_MOUSE | STAM-binding protein OS=Mus musculus GN=Stambp PE=1 SV=1 | 312 | 504 | 4.0E-39 |
| sp|Q54Q40|D1039_DICDI | Probable ubiquitin thioesterase DG1039 OS=Dictyostelium discoideum GN=DG1039 PE=3 SV=1 | 354 | 514 | 1.0E-38 |
| sp|Q5PNU3|AMSH3_ARATH | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3 PE=1 SV=2 | 322 | 531 | 2.0E-38 |
| sp|Q63ZM7|STABP_XENLA | STAM-binding protein-like OS=Xenopus laevis GN=stambp PE=2 SV=1 | 312 | 501 | 2.0E-38 |
| sp|Q8VYB5|AMSH1_ARATH | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana GN=AMSH1 PE=2 SV=1 | 343 | 531 | 4.0E-37 |
| sp|Q96FJ0|STALP_HUMAN | AMSH-like protease OS=Homo sapiens GN=STAMBPL1 PE=1 SV=2 | 352 | 502 | 4.0E-35 |
| sp|Q6NKP9|AMSH2_ARATH | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana GN=AMSH2 PE=2 SV=1 | 354 | 531 | 1.0E-34 |
| sp|Q5R558|STALP_PONAB | AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=2 SV=1 | 352 | 502 | 2.0E-34 |
| sp|Q76N33|STALP_MOUSE | AMSH-like protease OS=Mus musculus GN=Stambpl1 PE=1 SV=1 | 341 | 504 | 2.0E-33 |
| sp|Q9P371|SST2_SCHPO | AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst2 PE=1 SV=1 | 13 | 119 | 1.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0140492 | metal-dependent deubiquitinase activity | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0070122 | obsolete isopeptidase activity | Yes |
| GO:0016787 | hydrolase activity | No |
| GO:0005488 | binding | No |
| GO:0101005 | deubiquitinase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0003824 | catalytic activity | No |
| GO:0019783 | ubiquitin-like protein peptidase activity | No |
| GO:0008233 | peptidase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0008237 | metallopeptidase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 55.35 | 30.34 | 80.36 |
| CcL | In ants, during behavior modification | 51.24 | 27.68 | 74.80 |
| CcD | In ants, recently dead | 84.71 | 45.90 | 123.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.773961 | no |
| SC16a | CcD | 0.058681 | no |
| CcL | CcD | 0.024067 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7644 MEPRSSQRLMRPPPTVSSLVAQAENFSFNTNIPFKHWARAAETLYHEASFAISDGDYGRAYTMLYRHSVLVLKCL PSHPQFKEADSRRAFRPLSRRIDLALDHLERIKPVLEDDYAEWERMAAEVGTAPFQSSNAYADFATRDPTLSGPA KVLDASEHQELAVDLAQKELARRDRVKRVSRLPASAESGHGDSPRSVQELDESSLQRQMETARRAWSLDQQDQGD EVNTRDPAAAPRAPPSQPYYPSIARSKPVEYEASVHRRRPSYIPVPCRPPKERIPSQDLASNVGTRPLESDDDLL PAVPRKLPLEVSPLSTTLSRPPRPPKGIPDGPSLPRKDRLAFKPGAYLENGDPIRSVFVPSKLRSTFLEIASKNT EAGLEMCGILCGLPINNALFVRCLLIPDQRCTSDTCETENEGAMFDYCASEDLLVLGWIHTHPTQTCFMSSRDLH TQAGYQVMMPESIAIVCAPRFQPAYGIFRLTHPPGLDYILDCRHQDTFHQHTIDNIYRETEHPDGHVYESDKLPF YVHDLRTK |
| Coding | >Ophio5|7644 ATGGAGCCTCGCTCGTCGCAGCGGCTGATGCGCCCGCCGCCCACCGTCAGCTCTCTCGTCGCTCAGGCGGAAAAC TTTAGCTTCAACACCAATATCCCTTTCAAGCACTGGGCGAGGGCTGCCGAGACGCTATACCATGAGGCGTCTTTC GCCATTTCTGATGGCGATTACGGACGAGCGTACACGATGCTCTATCGCCACTCTGTTCTCGTCCTCAAATGTCTG CCGTCGCATCCTCAGTTTAAGGAAGCCGACAGTCGCAGAGCGTTCCGGCCCTTGTCGAGACGCATCGACCTCGCA CTCGACCACTTGGAGCGCATCAAGCCCGTCCTGGAAGACGATTATGCCGAGTGGGAGCGAATGGCGGCCGAGGTC GGTACCGCTCCGTTCCAATCTTCGAATGCATATGCAGACTTCGCGACGCGGGACCCCACCTTGAGTGGCCCTGCG AAAGTGCTCGACGCGTCCGAGCATCAGGAGCTCGCTGTCGACTTGGCCCAGAAAGAGCTGGCTCGCAGAGACAGG GTCAAGCGAGTGTCTCGACTCCCTGCCTCAGCCGAATCCGGACATGGCGACTCTCCGCGCAGCGTCCAGGAGCTC GACGAAAGCAGTTTGCAGCGGCAGATGGAAACTGCCCGACGAGCTTGGAGCCTCGACCAGCAAGATCAAGGCGAT GAAGTGAATACTCGTGACCCTGCTGCCGCTCCCCGCGCCCCACCGTCCCAGCCCTATTATCCATCGATAGCCAGA TCGAAGCCGGTCGAATACGAGGCTTCCGTGCACCGTCGGCGCCCGTCTTACATACCTGTGCCTTGCCGGCCGCCG AAAGAAAGAATTCCCTCGCAGGATCTCGCTTCTAACGTGGGGACGCGCCCCCTCGAGTCAGATGACGACCTGCTA CCGGCCGTCCCACGCAAGCTGCCCCTGGAAGTGAGCCCCTTGTCCACAACCCTCAGCCGACCCCCTCGACCTCCC AAAGGAATCCCGGACGGGCCGTCGCTCCCTAGGAAAGATCGGCTGGCCTTTAAGCCCGGGGCCTATCTCGAGAAC GGCGACCCTATCCGGTCTGTTTTTGTCCCGAGCAAACTGCGATCCACATTTCTCGAGATTGCCTCCAAGAACACG GAGGCCGGGCTGGAGATGTGCGGTATCCTGTGTGGTTTGCCCATCAACAATGCTTTGTTCGTGCGCTGCCTCCTC ATTCCCGATCAGCGATGCACCTCGGACACGTGCGAGACGGAGAACGAAGGTGCCATGTTCGACTACTGCGCAAGC GAGGACCTTCTCGTGCTTGGATGGATCCACACGCACCCCACCCAGACGTGCTTCATGAGCTCGCGCGACCTGCAC ACGCAGGCGGGCTACCAAGTCATGATGCCCGAGAGCATCGCCATCGTCTGCGCTCCCAGGTTCCAGCCGGCTTAC GGCATCTTCCGCCTCACTCATCCCCCTGGGCTGGACTATATACTCGACTGCAGACACCAAGACACCTTTCACCAG CACACCATCGACAACATCTATCGGGAGACGGAGCACCCAGACGGACACGTCTACGAGAGCGATAAATTGCCCTTT TACGTGCATGACCTACGAACGAAG |
| Transcript | >Ophio5|7644 ATGGAGCCTCGCTCGTCGCAGCGGCTGATGCGCCCGCCGCCCACCGTCAGCTCTCTCGTCGCTCAGGCGGAAAAC TTTAGCTTCAACACCAATATCCCTTTCAAGCACTGGGCGAGGGCTGCCGAGACGCTATACCATGAGGCGTCTTTC GCCATTTCTGATGGCGATTACGGACGAGCGTACACGATGCTCTATCGCCACTCTGTTCTCGTCCTCAAATGTCTG CCGTCGCATCCTCAGTTTAAGGAAGCCGACAGTCGCAGAGCGTTCCGGCCCTTGTCGAGACGCATCGACCTCGCA CTCGACCACTTGGAGCGCATCAAGCCCGTCCTGGAAGACGATTATGCCGAGTGGGAGCGAATGGCGGCCGAGGTC GGTACCGCTCCGTTCCAATCTTCGAATGCATATGCAGACTTCGCGACGCGGGACCCCACCTTGAGTGGCCCTGCG AAAGTGCTCGACGCGTCCGAGCATCAGGAGCTCGCTGTCGACTTGGCCCAGAAAGAGCTGGCTCGCAGAGACAGG GTCAAGCGAGTGTCTCGACTCCCTGCCTCAGCCGAATCCGGACATGGCGACTCTCCGCGCAGCGTCCAGGAGCTC GACGAAAGCAGTTTGCAGCGGCAGATGGAAACTGCCCGACGAGCTTGGAGCCTCGACCAGCAAGATCAAGGCGAT GAAGTGAATACTCGTGACCCTGCTGCCGCTCCCCGCGCCCCACCGTCCCAGCCCTATTATCCATCGATAGCCAGA TCGAAGCCGGTCGAATACGAGGCTTCCGTGCACCGTCGGCGCCCGTCTTACATACCTGTGCCTTGCCGGCCGCCG AAAGAAAGAATTCCCTCGCAGGATCTCGCTTCTAACGTGGGGACGCGCCCCCTCGAGTCAGATGACGACCTGCTA CCGGCCGTCCCACGCAAGCTGCCCCTGGAAGTGAGCCCCTTGTCCACAACCCTCAGCCGACCCCCTCGACCTCCC AAAGGAATCCCGGACGGGCCGTCGCTCCCTAGGAAAGATCGGCTGGCCTTTAAGCCCGGGGCCTATCTCGAGAAC GGCGACCCTATCCGGTCTGTTTTTGTCCCGAGCAAACTGCGATCCACATTTCTCGAGATTGCCTCCAAGAACACG GAGGCCGGGCTGGAGATGTGCGGTATCCTGTGTGGTTTGCCCATCAACAATGCTTTGTTCGTGCGCTGCCTCCTC ATTCCCGATCAGCGATGCACCTCGGACACGTGCGAGACGGAGAACGAAGGTGCCATGTTCGACTACTGCGCAAGC GAGGACCTTCTCGTGCTTGGATGGATCCACACGCACCCCACCCAGACGTGCTTCATGAGCTCGCGCGACCTGCAC ACGCAGGCGGGCTACCAAGTCATGATGCCCGAGAGCATCGCCATCGTCTGCGCTCCCAGGTTCCAGCCGGCTTAC GGCATCTTCCGCCTCACTCATCCCCCTGGGCTGGACTATATACTCGACTGCAGACACCAAGACACCTTTCACCAG CACACCATCGACAACATCTATCGGGAGACGGAGCACCCAGACGGACACGTCTACGAGAGCGATAAATTGCCCTTT TACGTGCATGACCTACGAACGAAGTAG |
| Gene | >Ophio5|7644 ATGGAGCCTCGCTCGTCGCAGCGGCTGATGCGCCCGCCGCCCACCGTCAGCTCTCTCGTCGCTCAGGCGGAAAAC TTTAGCTTCAACACCAATATCCCTTTCAAGCACTGGGCGAGGGCTGCCGAGACGCTATACCATGAGGTCGGACCC GGCCTCTCCGCCTGGTCGACCGCCGCTGACAGTGCTTTTCCTTGCAGGCGTCTTTCGCCATTTCTGATGGCGATT ACGGACGAGCGTACACGATGCTCTATCGCCACTCTGTTCTCGTCCTCAAATGTCTGCCGTCGCATCCTCAGTTTA AGGAAGCCGACAGTCGCAGAGCGTTCCGGCCCTTGTCGAGACGCATCGACCTCGCACTCGACCACTTGGAGCGCA TCAAGCCCGTCCTGGAAGACGATTATGCCGAGTGGGAGCGAATGGCGGCCGAGGTCGGTACCGCTCCGTTCCAAT CTTCGAATGCATATGCAGACTTCGCGACGCGGGACCCCACCTTGAGTGGCCCTGCGAAAGTGCTCGACGCGTCCG AGCATCAGGAGCTCGCTGTCGACTTGGCCCAGAAAGAGCTGGCTCGCAGAGACAGGGTCAAGCGAGTGTCTCGAC TCCCTGCCTCAGCCGAATCCGGACATGGCGACTCTCCGCGCAGCGTCCAGGAGCTCGACGAAAGCAGTTTGCAGC GGCAGATGGAAACTGCCCGACGAGCTTGGAGCCTCGACCAGCAAGATCAAGGCGATGAAGTGAATACTCGTGACC CTGCTGCCGCTCCCCGCGCCCCACCGTCCCAGCCCTATTATCCATCGATAGCCAGATCGAAGCCGGTCGAATACG AGGCTTCCGTGCACCGTCGGCGCCCGTCTTACATACCTGTGCCTTGCCGGCCGCCGAAAGAAAGAATTCCCTCGC AGGATCTCGCTTCTAACGTGGGGACGCGCCCCCTCGAGTCAGATGACGACCTGCTACCGGCCGTCCCACGCAAGC TGCCCCTGGAAGTGAGCCCCTTGTCCACAACCCTCAGCCGACCCCCTCGACCTCCCAAAGGAATCCCGGACGGGC CGTCGCTCCCTAGGAAAGATCGGCTGGCCTTTAAGCCCGGGGCCTATCTCGAGAACGGCGACCCTATCCGGTCTG TTTTTGTCCCGAGCAAACTGCGATCCACATTTCTCGAGATTGCCTCCAAGAACACGGAGGCCGGGCTGGAGATGT GCGGTATCCTGTGTGGTTTGCCCATCAACAATGCTTTGTTCGTGCGCTGCCTCCTCATTCCCGATCAGCGATGCA CCTCGGACACGTGCGAGACGGAGAACGAAGGTGCCATGTTCGACTACTGCGCAAGCGAGGACCTTCTCGTGCTTG GATGGATCCACACGCACCCCACCCAGACGTGCTTCATGAGCTCGCGCGACCTGCACACGCAGGCGGGCTACCAAG TCATGATGCCCGAGAGCATCGCCATCGTCTGCGCTCCCAGGTTCCAGCCGGCGTGAGTGGAGAGTGTATGTAGAG GGCCGCGACAACGTGCTAATTTGTGACAGTTACGGCATCTTCCGCCTCACTCATCCCCCTGGGCTGGACTATATA CTCGACTGCAGACACCAAGACACCTTTCACCAGCACACCATCGACAACATCTATCGGGAGACGGAGCACCCAGAC GGACACGTCTACGAGAGCGATAAATTGCCCTTTTACGTGCATGACCTACGAACGAAGTAG |