Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7644
Gene name
Locationscaffold_76:32277..33987
Strand+
Gene length (bp)1710
Transcript length (bp)1602
Coding sequence length (bp)1599
Protein length (aa) 533

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01398 JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease 3.2E-13 355 460
PF08969 USP8_dimer USP8 dimerisation domain 2.5E-07 16 117

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9P371|SST2_SCHPO AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst2 PE=1 SV=1 341 533 1.0E-51
sp|O95630|STABP_HUMAN STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1 317 504 2.0E-41
sp|Q6TH47|STBPA_DANRE STAM-binding protein-like A OS=Danio rerio GN=stambpa PE=2 SV=3 321 504 1.0E-40
sp|Q8R424|STABP_RAT STAM-binding protein OS=Rattus norvegicus GN=Stambp PE=2 SV=1 298 504 3.0E-40
sp|Q9CQ26|STABP_MOUSE STAM-binding protein OS=Mus musculus GN=Stambp PE=1 SV=1 312 504 4.0E-39
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Swissprot ID Swissprot Description Start End E-value
sp|Q9P371|SST2_SCHPO AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst2 PE=1 SV=1 341 533 1.0E-51
sp|O95630|STABP_HUMAN STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1 317 504 2.0E-41
sp|Q6TH47|STBPA_DANRE STAM-binding protein-like A OS=Danio rerio GN=stambpa PE=2 SV=3 321 504 1.0E-40
sp|Q8R424|STABP_RAT STAM-binding protein OS=Rattus norvegicus GN=Stambp PE=2 SV=1 298 504 3.0E-40
sp|Q9CQ26|STABP_MOUSE STAM-binding protein OS=Mus musculus GN=Stambp PE=1 SV=1 312 504 4.0E-39
sp|Q54Q40|D1039_DICDI Probable ubiquitin thioesterase DG1039 OS=Dictyostelium discoideum GN=DG1039 PE=3 SV=1 354 514 1.0E-38
sp|Q5PNU3|AMSH3_ARATH AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3 PE=1 SV=2 322 531 2.0E-38
sp|Q63ZM7|STABP_XENLA STAM-binding protein-like OS=Xenopus laevis GN=stambp PE=2 SV=1 312 501 2.0E-38
sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana GN=AMSH1 PE=2 SV=1 343 531 4.0E-37
sp|Q96FJ0|STALP_HUMAN AMSH-like protease OS=Homo sapiens GN=STAMBPL1 PE=1 SV=2 352 502 4.0E-35
sp|Q6NKP9|AMSH2_ARATH AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana GN=AMSH2 PE=2 SV=1 354 531 1.0E-34
sp|Q5R558|STALP_PONAB AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=2 SV=1 352 502 2.0E-34
sp|Q76N33|STALP_MOUSE AMSH-like protease OS=Mus musculus GN=Stambpl1 PE=1 SV=1 341 504 2.0E-33
sp|Q9P371|SST2_SCHPO AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst2 PE=1 SV=1 13 119 1.0E-09
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GO

GO Term Description Terminal node
GO:0140492 metal-dependent deubiquitinase activity Yes
GO:0005515 protein binding Yes
GO:0070122 obsolete isopeptidase activity Yes
GO:0016787 hydrolase activity No
GO:0005488 binding No
GO:0101005 deubiquitinase activity No
GO:0140096 catalytic activity, acting on a protein No
GO:0003824 catalytic activity No
GO:0019783 ubiquitin-like protein peptidase activity No
GO:0008233 peptidase activity No
GO:0003674 molecular_function No
GO:0008237 metallopeptidase activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7644
MEPRSSQRLMRPPPTVSSLVAQAENFSFNTNIPFKHWARAAETLYHEASFAISDGDYGRAYTMLYRHSVLVLKCL
PSHPQFKEADSRRAFRPLSRRIDLALDHLERIKPVLEDDYAEWERMAAEVGTAPFQSSNAYADFATRDPTLSGPA
KVLDASEHQELAVDLAQKELARRDRVKRVSRLPASAESGHGDSPRSVQELDESSLQRQMETARRAWSLDQQDQGD
EVNTRDPAAAPRAPPSQPYYPSIARSKPVEYEASVHRRRPSYIPVPCRPPKERIPSQDLASNVGTRPLESDDDLL
PAVPRKLPLEVSPLSTTLSRPPRPPKGIPDGPSLPRKDRLAFKPGAYLENGDPIRSVFVPSKLRSTFLEIASKNT
EAGLEMCGILCGLPINNALFVRCLLIPDQRCTSDTCETENEGAMFDYCASEDLLVLGWIHTHPTQTCFMSSRDLH
TQAGYQVMMPESIAIVCAPRFQPAYGIFRLTHPPGLDYILDCRHQDTFHQHTIDNIYRETEHPDGHVYESDKLPF
YVHDLRTK
Coding >Ophio5|7644
ATGGAGCCTCGCTCGTCGCAGCGGCTGATGCGCCCGCCGCCCACCGTCAGCTCTCTCGTCGCTCAGGCGGAAAAC
TTTAGCTTCAACACCAATATCCCTTTCAAGCACTGGGCGAGGGCTGCCGAGACGCTATACCATGAGGCGTCTTTC
GCCATTTCTGATGGCGATTACGGACGAGCGTACACGATGCTCTATCGCCACTCTGTTCTCGTCCTCAAATGTCTG
CCGTCGCATCCTCAGTTTAAGGAAGCCGACAGTCGCAGAGCGTTCCGGCCCTTGTCGAGACGCATCGACCTCGCA
CTCGACCACTTGGAGCGCATCAAGCCCGTCCTGGAAGACGATTATGCCGAGTGGGAGCGAATGGCGGCCGAGGTC
GGTACCGCTCCGTTCCAATCTTCGAATGCATATGCAGACTTCGCGACGCGGGACCCCACCTTGAGTGGCCCTGCG
AAAGTGCTCGACGCGTCCGAGCATCAGGAGCTCGCTGTCGACTTGGCCCAGAAAGAGCTGGCTCGCAGAGACAGG
GTCAAGCGAGTGTCTCGACTCCCTGCCTCAGCCGAATCCGGACATGGCGACTCTCCGCGCAGCGTCCAGGAGCTC
GACGAAAGCAGTTTGCAGCGGCAGATGGAAACTGCCCGACGAGCTTGGAGCCTCGACCAGCAAGATCAAGGCGAT
GAAGTGAATACTCGTGACCCTGCTGCCGCTCCCCGCGCCCCACCGTCCCAGCCCTATTATCCATCGATAGCCAGA
TCGAAGCCGGTCGAATACGAGGCTTCCGTGCACCGTCGGCGCCCGTCTTACATACCTGTGCCTTGCCGGCCGCCG
AAAGAAAGAATTCCCTCGCAGGATCTCGCTTCTAACGTGGGGACGCGCCCCCTCGAGTCAGATGACGACCTGCTA
CCGGCCGTCCCACGCAAGCTGCCCCTGGAAGTGAGCCCCTTGTCCACAACCCTCAGCCGACCCCCTCGACCTCCC
AAAGGAATCCCGGACGGGCCGTCGCTCCCTAGGAAAGATCGGCTGGCCTTTAAGCCCGGGGCCTATCTCGAGAAC
GGCGACCCTATCCGGTCTGTTTTTGTCCCGAGCAAACTGCGATCCACATTTCTCGAGATTGCCTCCAAGAACACG
GAGGCCGGGCTGGAGATGTGCGGTATCCTGTGTGGTTTGCCCATCAACAATGCTTTGTTCGTGCGCTGCCTCCTC
ATTCCCGATCAGCGATGCACCTCGGACACGTGCGAGACGGAGAACGAAGGTGCCATGTTCGACTACTGCGCAAGC
GAGGACCTTCTCGTGCTTGGATGGATCCACACGCACCCCACCCAGACGTGCTTCATGAGCTCGCGCGACCTGCAC
ACGCAGGCGGGCTACCAAGTCATGATGCCCGAGAGCATCGCCATCGTCTGCGCTCCCAGGTTCCAGCCGGCTTAC
GGCATCTTCCGCCTCACTCATCCCCCTGGGCTGGACTATATACTCGACTGCAGACACCAAGACACCTTTCACCAG
CACACCATCGACAACATCTATCGGGAGACGGAGCACCCAGACGGACACGTCTACGAGAGCGATAAATTGCCCTTT
TACGTGCATGACCTACGAACGAAG
Transcript >Ophio5|7644
ATGGAGCCTCGCTCGTCGCAGCGGCTGATGCGCCCGCCGCCCACCGTCAGCTCTCTCGTCGCTCAGGCGGAAAAC
TTTAGCTTCAACACCAATATCCCTTTCAAGCACTGGGCGAGGGCTGCCGAGACGCTATACCATGAGGCGTCTTTC
GCCATTTCTGATGGCGATTACGGACGAGCGTACACGATGCTCTATCGCCACTCTGTTCTCGTCCTCAAATGTCTG
CCGTCGCATCCTCAGTTTAAGGAAGCCGACAGTCGCAGAGCGTTCCGGCCCTTGTCGAGACGCATCGACCTCGCA
CTCGACCACTTGGAGCGCATCAAGCCCGTCCTGGAAGACGATTATGCCGAGTGGGAGCGAATGGCGGCCGAGGTC
GGTACCGCTCCGTTCCAATCTTCGAATGCATATGCAGACTTCGCGACGCGGGACCCCACCTTGAGTGGCCCTGCG
AAAGTGCTCGACGCGTCCGAGCATCAGGAGCTCGCTGTCGACTTGGCCCAGAAAGAGCTGGCTCGCAGAGACAGG
GTCAAGCGAGTGTCTCGACTCCCTGCCTCAGCCGAATCCGGACATGGCGACTCTCCGCGCAGCGTCCAGGAGCTC
GACGAAAGCAGTTTGCAGCGGCAGATGGAAACTGCCCGACGAGCTTGGAGCCTCGACCAGCAAGATCAAGGCGAT
GAAGTGAATACTCGTGACCCTGCTGCCGCTCCCCGCGCCCCACCGTCCCAGCCCTATTATCCATCGATAGCCAGA
TCGAAGCCGGTCGAATACGAGGCTTCCGTGCACCGTCGGCGCCCGTCTTACATACCTGTGCCTTGCCGGCCGCCG
AAAGAAAGAATTCCCTCGCAGGATCTCGCTTCTAACGTGGGGACGCGCCCCCTCGAGTCAGATGACGACCTGCTA
CCGGCCGTCCCACGCAAGCTGCCCCTGGAAGTGAGCCCCTTGTCCACAACCCTCAGCCGACCCCCTCGACCTCCC
AAAGGAATCCCGGACGGGCCGTCGCTCCCTAGGAAAGATCGGCTGGCCTTTAAGCCCGGGGCCTATCTCGAGAAC
GGCGACCCTATCCGGTCTGTTTTTGTCCCGAGCAAACTGCGATCCACATTTCTCGAGATTGCCTCCAAGAACACG
GAGGCCGGGCTGGAGATGTGCGGTATCCTGTGTGGTTTGCCCATCAACAATGCTTTGTTCGTGCGCTGCCTCCTC
ATTCCCGATCAGCGATGCACCTCGGACACGTGCGAGACGGAGAACGAAGGTGCCATGTTCGACTACTGCGCAAGC
GAGGACCTTCTCGTGCTTGGATGGATCCACACGCACCCCACCCAGACGTGCTTCATGAGCTCGCGCGACCTGCAC
ACGCAGGCGGGCTACCAAGTCATGATGCCCGAGAGCATCGCCATCGTCTGCGCTCCCAGGTTCCAGCCGGCTTAC
GGCATCTTCCGCCTCACTCATCCCCCTGGGCTGGACTATATACTCGACTGCAGACACCAAGACACCTTTCACCAG
CACACCATCGACAACATCTATCGGGAGACGGAGCACCCAGACGGACACGTCTACGAGAGCGATAAATTGCCCTTT
TACGTGCATGACCTACGAACGAAGTAG
Gene >Ophio5|7644
ATGGAGCCTCGCTCGTCGCAGCGGCTGATGCGCCCGCCGCCCACCGTCAGCTCTCTCGTCGCTCAGGCGGAAAAC
TTTAGCTTCAACACCAATATCCCTTTCAAGCACTGGGCGAGGGCTGCCGAGACGCTATACCATGAGGTCGGACCC
GGCCTCTCCGCCTGGTCGACCGCCGCTGACAGTGCTTTTCCTTGCAGGCGTCTTTCGCCATTTCTGATGGCGATT
ACGGACGAGCGTACACGATGCTCTATCGCCACTCTGTTCTCGTCCTCAAATGTCTGCCGTCGCATCCTCAGTTTA
AGGAAGCCGACAGTCGCAGAGCGTTCCGGCCCTTGTCGAGACGCATCGACCTCGCACTCGACCACTTGGAGCGCA
TCAAGCCCGTCCTGGAAGACGATTATGCCGAGTGGGAGCGAATGGCGGCCGAGGTCGGTACCGCTCCGTTCCAAT
CTTCGAATGCATATGCAGACTTCGCGACGCGGGACCCCACCTTGAGTGGCCCTGCGAAAGTGCTCGACGCGTCCG
AGCATCAGGAGCTCGCTGTCGACTTGGCCCAGAAAGAGCTGGCTCGCAGAGACAGGGTCAAGCGAGTGTCTCGAC
TCCCTGCCTCAGCCGAATCCGGACATGGCGACTCTCCGCGCAGCGTCCAGGAGCTCGACGAAAGCAGTTTGCAGC
GGCAGATGGAAACTGCCCGACGAGCTTGGAGCCTCGACCAGCAAGATCAAGGCGATGAAGTGAATACTCGTGACC
CTGCTGCCGCTCCCCGCGCCCCACCGTCCCAGCCCTATTATCCATCGATAGCCAGATCGAAGCCGGTCGAATACG
AGGCTTCCGTGCACCGTCGGCGCCCGTCTTACATACCTGTGCCTTGCCGGCCGCCGAAAGAAAGAATTCCCTCGC
AGGATCTCGCTTCTAACGTGGGGACGCGCCCCCTCGAGTCAGATGACGACCTGCTACCGGCCGTCCCACGCAAGC
TGCCCCTGGAAGTGAGCCCCTTGTCCACAACCCTCAGCCGACCCCCTCGACCTCCCAAAGGAATCCCGGACGGGC
CGTCGCTCCCTAGGAAAGATCGGCTGGCCTTTAAGCCCGGGGCCTATCTCGAGAACGGCGACCCTATCCGGTCTG
TTTTTGTCCCGAGCAAACTGCGATCCACATTTCTCGAGATTGCCTCCAAGAACACGGAGGCCGGGCTGGAGATGT
GCGGTATCCTGTGTGGTTTGCCCATCAACAATGCTTTGTTCGTGCGCTGCCTCCTCATTCCCGATCAGCGATGCA
CCTCGGACACGTGCGAGACGGAGAACGAAGGTGCCATGTTCGACTACTGCGCAAGCGAGGACCTTCTCGTGCTTG
GATGGATCCACACGCACCCCACCCAGACGTGCTTCATGAGCTCGCGCGACCTGCACACGCAGGCGGGCTACCAAG
TCATGATGCCCGAGAGCATCGCCATCGTCTGCGCTCCCAGGTTCCAGCCGGCGTGAGTGGAGAGTGTATGTAGAG
GGCCGCGACAACGTGCTAATTTGTGACAGTTACGGCATCTTCCGCCTCACTCATCCCCCTGGGCTGGACTATATA
CTCGACTGCAGACACCAAGACACCTTTCACCAGCACACCATCGACAACATCTATCGGGAGACGGAGCACCCAGAC
GGACACGTCTACGAGAGCGATAAATTGCCCTTTTACGTGCATGACCTACGAACGAAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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