© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7627 |
| Gene name | |
| Location | scaffold_758:7394..7848 |
| Strand | + |
| Gene length (bp) | 454 |
| Transcript length (bp) | 393 |
| Coding sequence length (bp) | 390 |
| Protein length (aa) | 130 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01783 | Ribosomal_L32p | Ribosomal L32p protein family | 2.3E-12 | 61 | 107 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94379|RM32_SCHPO | Probable 54S ribosomal protein L32, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl32 PE=3 SV=1 | 40 | 117 | 4.0E-16 |
| sp|P25348|RM32_YEAST | 54S ribosomal protein L32, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL32 PE=1 SV=1 | 56 | 124 | 3.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0006412 | translation | Yes |
| GO:0015934 | large ribosomal subunit | Yes |
| GO:0006518 | peptide metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0005575 | cellular_component | No |
| GO:0005198 | structural molecule activity | No |
| GO:0044391 | ribosomal subunit | No |
| GO:0043043 | peptide biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7627 MAAAAAVLAPLAPRLALASLISSPLRWPAIVWPRPLAGFGFPSISLNLPTLDDIWESVLRAVPKKKTSHSKKRHR QMAGKALEDVHGLCDCPGCGERKRTHRICQKCLDDMRRIWREDTPEFKPFETPVV |
| Coding | >Ophio5|7627 ATGGCCGCTGCTGCCGCCGTCCTCGCGCCCCTCGCGCCGCGTCTGGCTCTCGCCTCCCTCATCAGTTCGCCGCTC CGATGGCCGGCCATAGTCTGGCCGCGGCCGCTCGCCGGCTTTGGGTTTCCGAGCATCAGCCTCAACTTGCCGACG CTGGATGACATCTGGGAGTCTGTTCTGCGGGCTGTGCCGAAGAAGAAGACGTCGCACTCCAAGAAGCGACACCGG CAGATGGCCGGCAAGGCCCTCGAGGACGTACACGGTCTCTGCGATTGTCCTGGCTGCGGAGAGAGGAAGCGGACA CACCGCATATGTCAGAAGTGTCTCGATGATATGCGGAGGATATGGCGTGAAGATACACCCGAGTTCAAGCCGTTT GAAACGCCCGTAGTA |
| Transcript | >Ophio5|7627 ATGGCCGCTGCTGCCGCCGTCCTCGCGCCCCTCGCGCCGCGTCTGGCTCTCGCCTCCCTCATCAGTTCGCCGCTC CGATGGCCGGCCATAGTCTGGCCGCGGCCGCTCGCCGGCTTTGGGTTTCCGAGCATCAGCCTCAACTTGCCGACG CTGGATGACATCTGGGAGTCTGTTCTGCGGGCTGTGCCGAAGAAGAAGACGTCGCACTCCAAGAAGCGACACCGG CAGATGGCCGGCAAGGCCCTCGAGGACGTACACGGTCTCTGCGATTGTCCTGGCTGCGGAGAGAGGAAGCGGACA CACCGCATATGTCAGAAGTGTCTCGATGATATGCGGAGGATATGGCGTGAAGATACACCCGAGTTCAAGCCGTTT GAAACGCCCGTAGTATAG |
| Gene | >Ophio5|7627 ATGGCCGCTGCTGCCGCCGTCCTCGCGCCCCTCGCGCCGCGTCTGGCTCTCGCCTCCCTCATCAGTTCGCCGCTC CGATGGCCGGCCATAGTCTGGCCGCGGCCGCTCGCCGGCTTTGGGTTTCCGAGCATCAGCCTCAACTTGCCGACG CTGGATGACATCTGGGAGTCTGTTCTGCGGGCTGTGCCGAAGAAGAAGACGTCGCACTCCAAGAAGCGACACCGG CAGATGGCCGGCAAGGCCCTCGAGGACGTACACGGTCTCTGCGATTGTCCTGGCTGCGGAGAGAGGAAGCGGACA CACCGCATATGTCAGAAGTGTCTCGATGGTAGGTGCTGGTCTGGTTGACGTCGTAGACGTCGTGTGTTTTGCTGA TGGGTTGCGTGCAGATATGCGGAGGATATGGCGTGAAGATACACCCGAGTTCAAGCCGTTTGAAACGCCCGTAGT ATAG |