© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7607 |
| Gene name | |
| Location | scaffold_753:66..1554 |
| Strand | + |
| Gene length (bp) | 1488 |
| Transcript length (bp) | 1311 |
| Coding sequence length (bp) | 1308 |
| Protein length (aa) | 436 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00566 | RabGAP-TBC | Rab-GTPase-TBC domain | 5.5E-32 | 151 | 392 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36618|CDC16_SCHPO | Cell division control protein 16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc16 PE=1 SV=1 | 133 | 435 | 2.0E-81 |
| sp|P26448|BUB2_YEAST | Mitotic check point protein BUB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUB2 PE=1 SV=1 | 133 | 434 | 5.0E-65 |
| sp|Q55EP9|BUB2_DICDI | Putative mitotic check point protein BUB2 OS=Dictyostelium discoideum GN=bub2 PE=3 SV=1 | 142 | 436 | 2.0E-52 |
| sp|Q5F361|TBCK_CHICK | TBC domain-containing protein kinase-like protein OS=Gallus gallus GN=TBCK PE=2 SV=2 | 181 | 392 | 9.0E-10 |
| sp|Q8BM85|TBCK_MOUSE | TBC domain-containing protein kinase-like protein OS=Mus musculus GN=Tbck PE=1 SV=1 | 181 | 392 | 9.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36618|CDC16_SCHPO | Cell division control protein 16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc16 PE=1 SV=1 | 133 | 435 | 2.0E-81 |
| sp|P26448|BUB2_YEAST | Mitotic check point protein BUB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUB2 PE=1 SV=1 | 133 | 434 | 5.0E-65 |
| sp|Q55EP9|BUB2_DICDI | Putative mitotic check point protein BUB2 OS=Dictyostelium discoideum GN=bub2 PE=3 SV=1 | 142 | 436 | 2.0E-52 |
| sp|Q5F361|TBCK_CHICK | TBC domain-containing protein kinase-like protein OS=Gallus gallus GN=TBCK PE=2 SV=2 | 181 | 392 | 9.0E-10 |
| sp|Q8BM85|TBCK_MOUSE | TBC domain-containing protein kinase-like protein OS=Mus musculus GN=Tbck PE=1 SV=1 | 181 | 392 | 9.0E-10 |
| sp|Q8TEA7|TBCK_HUMAN | TBC domain-containing protein kinase-like protein OS=Homo sapiens GN=TBCK PE=1 SV=4 | 181 | 392 | 2.0E-09 |
| sp|Q8R3D1|TBC13_MOUSE | TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=1 SV=1 | 260 | 393 | 4.0E-09 |
| sp|O43048|YH51_SCHPO | TBC domain-containing protein C215.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC215.01 PE=3 SV=4 | 267 | 401 | 2.0E-08 |
| sp|Q9NVG8|TBC13_HUMAN | TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3 | 260 | 393 | 2.0E-08 |
| sp|Q8BYH7|TBC17_MOUSE | TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=1 SV=2 | 267 | 411 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 20.15 | 8.96 | 31.34 |
| CcL | In ants, during behavior modification | 127.63 | 58.91 | 196.35 |
| CcD | In ants, recently dead | 45.80 | 23.67 | 67.93 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000535 | yes |
| CcL | CcD | 0.000286 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7607 MPSPSPSSSSSPPRPVAELQPPPSPRTHRALRRLQSAHNLGASSPLANPPSLIAQQRRGLFGTSSSSPTTSDASR SPQRGRAYSDAASSLDGNAARRFVAKRPVFSHGHLSLQHIIRHGPNDGDFIGALESARWKVVDEGIKSAEDGMST LRIYVWLVLLDAPIMPTDEYLGLIHRGPSPAYSKIRNDTFRTLTTDPLFRRRVSEASLIRLLNAIAWKLHDAKED QRQSRPTSRQSSHPRESLVGSVSGHSQASKPQSNAGPEPGTYVQGMNVLAAPFLYAARSEAEAFVAFHSLLTREC PAYIRGAMDGVHRGLALVDKVLAIVDPKLSMYLTAKGLSAEIYAFPSVLTLCACTPPLPEVLRLWDFLFAYGPHL NIVCIVAQLTIMRSQILQSPSPNKVLRSFPQLHAHLVKSVTIGIIKKIPDDVYAEIVSHAL |
| Coding | >Ophio5|7607 ATGCCGAGCCCGTCGCCCTCGTCCTCCTCCTCGCCACCCCGCCCCGTCGCCGAGCTTCAGCCGCCGCCATCTCCC CGAACACACCGAGCTCTACGCCGGCTCCAGTCGGCTCACAATCTCGGGGCCTCGTCGCCGCTTGCGAACCCGCCG TCGCTCATCGCTCAGCAGCGCAGGGGCCTCTTCGGAACTTCTTCTTCTTCTCCGACTACGAGCGATGCCAGCCGC TCGCCGCAGCGGGGACGCGCCTACAGCGATGCCGCTTCTTCTCTCGACGGTAATGCCGCCCGACGCTTCGTCGCT AAGAGGCCTGTCTTTTCCCATGGTCATCTGTCGCTGCAGCATATTATTCGCCATGGTCCTAATGATGGCGACTTT ATTGGTGCGCTGGAGAGTGCTAGATGGAAGGTTGTCGATGAGGGCATCAAGAGCGCCGAGGATGGAATGTCGACG CTGAGGATATACGTTTGGCTCGTTCTCCTCGACGCCCCCATCATGCCTACCGACGAATACCTCGGCCTCATCCAT CGCGGCCCTTCGCCCGCCTACTCCAAGATCCGCAACGACACCTTTCGCACCCTCACCACCGATCCCCTCTTCCGC CGACGGGTTAGCGAGGCCAGCCTGATCCGTCTCCTCAACGCCATCGCCTGGAAGTTGCACGACGCCAAGGAGGAC CAGCGGCAGAGTCGTCCGACCAGCCGGCAATCCTCGCATCCCCGCGAGAGTCTCGTCGGCAGCGTCTCCGGCCAC TCTCAAGCGAGTAAGCCTCAGTCCAACGCCGGCCCGGAACCCGGCACCTACGTCCAGGGCATGAACGTCCTCGCC GCGCCCTTCCTCTACGCCGCCCGCAGCGAGGCTGAGGCCTTCGTCGCCTTCCACTCGCTCCTCACGCGCGAGTGC CCGGCCTACATCCGAGGCGCCATGGACGGCGTTCATCGCGGCCTGGCCCTCGTCGACAAGGTACTGGCCATCGTC GACCCCAAGCTCAGCATGTACCTGACGGCAAAGGGGCTGTCGGCCGAGATCTACGCCTTCCCCTCCGTCTTGACC CTCTGCGCCTGCACGCCGCCCCTGCCCGAGGTGCTACGCCTCTGGGATTTCCTCTTTGCTTACGGGCCCCATCTG AACATTGTCTGCATCGTCGCCCAGCTTACCATTATGAGGTCGCAGATCCTACAATCGCCCAGCCCCAACAAGGTG CTTCGATCGTTCCCGCAGCTGCATGCCCATCTCGTCAAGAGCGTCACCATCGGCATCATCAAGAAGATTCCTGAC GACGTCTATGCCGAGATTGTCTCCCATGCGCTC |
| Transcript | >Ophio5|7607 ATGCCGAGCCCGTCGCCCTCGTCCTCCTCCTCGCCACCCCGCCCCGTCGCCGAGCTTCAGCCGCCGCCATCTCCC CGAACACACCGAGCTCTACGCCGGCTCCAGTCGGCTCACAATCTCGGGGCCTCGTCGCCGCTTGCGAACCCGCCG TCGCTCATCGCTCAGCAGCGCAGGGGCCTCTTCGGAACTTCTTCTTCTTCTCCGACTACGAGCGATGCCAGCCGC TCGCCGCAGCGGGGACGCGCCTACAGCGATGCCGCTTCTTCTCTCGACGGTAATGCCGCCCGACGCTTCGTCGCT AAGAGGCCTGTCTTTTCCCATGGTCATCTGTCGCTGCAGCATATTATTCGCCATGGTCCTAATGATGGCGACTTT ATTGGTGCGCTGGAGAGTGCTAGATGGAAGGTTGTCGATGAGGGCATCAAGAGCGCCGAGGATGGAATGTCGACG CTGAGGATATACGTTTGGCTCGTTCTCCTCGACGCCCCCATCATGCCTACCGACGAATACCTCGGCCTCATCCAT CGCGGCCCTTCGCCCGCCTACTCCAAGATCCGCAACGACACCTTTCGCACCCTCACCACCGATCCCCTCTTCCGC CGACGGGTTAGCGAGGCCAGCCTGATCCGTCTCCTCAACGCCATCGCCTGGAAGTTGCACGACGCCAAGGAGGAC CAGCGGCAGAGTCGTCCGACCAGCCGGCAATCCTCGCATCCCCGCGAGAGTCTCGTCGGCAGCGTCTCCGGCCAC TCTCAAGCGAGTAAGCCTCAGTCCAACGCCGGCCCGGAACCCGGCACCTACGTCCAGGGCATGAACGTCCTCGCC GCGCCCTTCCTCTACGCCGCCCGCAGCGAGGCTGAGGCCTTCGTCGCCTTCCACTCGCTCCTCACGCGCGAGTGC CCGGCCTACATCCGAGGCGCCATGGACGGCGTTCATCGCGGCCTGGCCCTCGTCGACAAGGTACTGGCCATCGTC GACCCCAAGCTCAGCATGTACCTGACGGCAAAGGGGCTGTCGGCCGAGATCTACGCCTTCCCCTCCGTCTTGACC CTCTGCGCCTGCACGCCGCCCCTGCCCGAGGTGCTACGCCTCTGGGATTTCCTCTTTGCTTACGGGCCCCATCTG AACATTGTCTGCATCGTCGCCCAGCTTACCATTATGAGGTCGCAGATCCTACAATCGCCCAGCCCCAACAAGGTG CTTCGATCGTTCCCGCAGCTGCATGCCCATCTCGTCAAGAGCGTCACCATCGGCATCATCAAGAAGATTCCTGAC GACGTCTATGCCGAGATTGTCTCCCATGCGCTCTAA |
| Gene | >Ophio5|7607 ATGCCGAGCCCGTCGCCCTCGTCCTCCTCCTCGCCACCCCGCCCCGTCGCCGAGCTTCAGCCGCCGCCATCTCCC CGAACACACCGAGCTCTACGCCGGCTCCAGTCGGCTCACAATCTCGGGGCCTCGTCGCCGCTTGCGAACCCGCCG TCGCTCATCGCTCAGCAGCGCAGGGGCCTCTTCGGAACTTCTTCTTCTTCTCCGACTACGAGCGATGCCAGCCGC TCGCCGCAGCGGGGACGCGCCTACAGCGATGCCGCTTCTTCTCTCGACGGTAATGCCGCCCGACGCTTCGTCGCT AAGAGGCCTGTCTTTTCCCATGGTCATCTGTCGCTGCAGCATATTATTCGCCATGGTCCTAATGATGGCGACTTT ATTGGTGCGCTGGAGAGTGCTAGATGGAAGGTTGTCGATGAGGGCATCAAGAGCGCCGAGGATGGAATGGTACGT TGGCCTTTTTGACTCCTTTCACGAGCCTTCTAACTGATGCCGTGCTATCAGTCGACGCTGAGGATATACGTTTGG CTCGTTCTCCTCGACGCCCCCATCATGCCTACCGACGAATACCTCGGCCTCATCCATCGCGGCCCTTCGCCCGCC TACTCCAAGATCCGCAACGACACCTTTCGCACCCTCACCACCGATCCCCTCTTCCGCCGACGGGTTAGCGAGGCC AGCCTGATCCGTCTCCTCAACGCCATCGCCTGGAAGTTGCACGACGCCAAGGAGGACCAGCGGCAGAGTCGTCCG ACCAGCCGGCAATCCTCGCATCCCCGCGAGAGTCTCGTCGGCAGCGTCTCCGGCCACTCTCAAGCGAGTAAGCCT CGTCTGTTCCCCCCTTTCCCCCTCCCCCCAAAAACCCCAATTGACGCTCATCCCCCTTTGACAGAGTCCAACGCC GGCCCGGAACCCGGCACCTACGTCCAGGGCATGAACGTCCTCGCCGCGCCCTTCCTCTACGCCGCCCGCAGCGAG GCTGAGGCCTTCGTCGCCTTCCACTCGCTCCTCACGCGCGAGTGCCCGGCCTACATCCGAGGCGCCATGGACGGC GTTCATCGCGGCCTGGCCCTCGTCGACAAGGTACTGGCCATCGTCGACCCCAAGCTCAGCATGTACCTGACGGCA AAGGGGCTGTCGGCCGAGATCTACGCCTTCCCCTCCGTCTTGACCCTCTGCGCCTGCACGCCGCCCCTGCCCGAG GTGCTACGCCTCTGGGATTTCCTCTTTGCTTACGGGCCCCATCTGAACATTGTCTGCATCGTCGCCCAGCTTACC ATTATGAGGTCGCAGATCCTACAATCGCCCAGGTTAGAGCCGACTTCACTATGTAACGAAACCCTTTGACTGACT GACCCTGCCTATAGCCCCAACAAGGTGCTTCGATCGTTCCCGCAGCTGCATGCCCATCTCGTCAAGAGCGTCACC ATCGGCATCATCAAGAAGATTCCTGACGACGTCTATGCCGAGATTGTCTCCCATGCGCTCTAA |