Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7594
Gene name
Locationscaffold_75:37108..37585
Strand-
Gene length (bp)477
Transcript length (bp)477
Coding sequence length (bp)474
Protein length (aa) 158

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 2.2E-08 114 157

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 48 0.45

Transmembrane Domains

Domain # Start End Length
1 80 102 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7594
MAMDDSDDQRLPEGMARVGYDADSQVYTFQDDDGSYWESAPGCRYGRLTRVGHDGPEAEQQQPFMHRQPAVSWRH
EMMPLLNFGLLVGLSLLLLFWYLHWAADDSPKQCPGPSYTVRPGDTCWAICRARRIALRDLVARNPSVDCDALAV
ASVLCLPG
Coding >Ophio5|7594
ATGGCCATGGATGATTCCGACGACCAACGCCTCCCCGAGGGTATGGCCCGCGTCGGCTACGATGCCGACTCCCAA
GTCTACACCTTCCAGGACGACGACGGCTCCTACTGGGAGTCTGCCCCCGGTTGCCGCTACGGCCGCCTGACGCGC
GTCGGCCACGACGGTCCAGAGGCCGAGCAGCAGCAGCCCTTTATGCATCGTCAACCCGCCGTCTCGTGGCGCCAC
GAAATGATGCCTCTTCTCAACTTCGGCCTCCTCGTCGGTCTTAGTCTCCTCCTGCTCTTCTGGTACCTGCATTGG
GCCGCCGACGACTCCCCGAAGCAGTGTCCCGGACCTTCGTATACCGTCCGCCCCGGTGATACCTGCTGGGCCATC
TGCCGCGCCAGGCGCATCGCCCTCCGAGATCTCGTCGCACGCAACCCCTCCGTCGACTGCGATGCTCTTGCCGTC
GCCTCCGTCCTGTGTCTTCCGGGT
Transcript >Ophio5|7594
ATGGCCATGGATGATTCCGACGACCAACGCCTCCCCGAGGGTATGGCCCGCGTCGGCTACGATGCCGACTCCCAA
GTCTACACCTTCCAGGACGACGACGGCTCCTACTGGGAGTCTGCCCCCGGTTGCCGCTACGGCCGCCTGACGCGC
GTCGGCCACGACGGTCCAGAGGCCGAGCAGCAGCAGCCCTTTATGCATCGTCAACCCGCCGTCTCGTGGCGCCAC
GAAATGATGCCTCTTCTCAACTTCGGCCTCCTCGTCGGTCTTAGTCTCCTCCTGCTCTTCTGGTACCTGCATTGG
GCCGCCGACGACTCCCCGAAGCAGTGTCCCGGACCTTCGTATACCGTCCGCCCCGGTGATACCTGCTGGGCCATC
TGCCGCGCCAGGCGCATCGCCCTCCGAGATCTCGTCGCACGCAACCCCTCCGTCGACTGCGATGCTCTTGCCGTC
GCCTCCGTCCTGTGTCTTCCGGGTTGA
Gene >Ophio5|7594
ATGGCCATGGATGATTCCGACGACCAACGCCTCCCCGAGGGTATGGCCCGCGTCGGCTACGATGCCGACTCCCAA
GTCTACACCTTCCAGGACGACGACGGCTCCTACTGGGAGTCTGCCCCCGGTTGCCGCTACGGCCGCCTGACGCGC
GTCGGCCACGACGGTCCAGAGGCCGAGCAGCAGCAGCCCTTTATGCATCGTCAACCCGCCGTCTCGTGGCGCCAC
GAAATGATGCCTCTTCTCAACTTCGGCCTCCTCGTCGGTCTTAGTCTCCTCCTGCTCTTCTGGTACCTGCATTGG
GCCGCCGACGACTCCCCGAAGCAGTGTCCCGGACCTTCGTATACCGTCCGCCCCGGTGATACCTGCTGGGCCATC
TGCCGCGCCAGGCGCATCGCCCTCCGAGATCTCGTCGCACGCAACCCCTCCGTCGACTGCGATGCTCTTGCCGTC
GCCTCCGTCCTGTGTCTTCCGGGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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