© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7579 |
| Gene name | |
| Location | scaffold_75:2371..2994 |
| Strand | - |
| Gene length (bp) | 623 |
| Transcript length (bp) | 501 |
| Coding sequence length (bp) | 498 |
| Protein length (aa) | 166 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF15454 | LAMTOR | Late endosomal/lysosomal adaptor and MAPK and MTOR activator | 8.5E-06 | 19 | 74 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0032008 | positive regulation of TOR signaling | Yes |
| GO:0001919 | regulation of receptor recycling | Yes |
| GO:0007040 | lysosome organization | Yes |
| GO:0031902 | late endosome membrane | Yes |
| GO:0045121 | membrane raft | Yes |
| GO:0043410 | positive regulation of MAPK cascade | Yes |
| GO:0016197 | endosomal transport | Yes |
| GO:0071230 | cellular response to amino acid stimulus | Yes |
| GO:0042632 | cholesterol homeostasis | Yes |
| GO:0071986 | Ragulator complex | Yes |
| GO:0016043 | cellular component organization | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009967 | positive regulation of signal transduction | No |
| GO:0009987 | cellular process | No |
| GO:0051641 | cellular localization | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0005575 | cellular_component | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0071310 | cellular response to organic substance | No |
| GO:0098857 | membrane microdomain | No |
| GO:0046907 | intracellular transport | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0043200 | response to amino acid | No |
| GO:0008150 | biological_process | No |
| GO:0071229 | cellular response to acid chemical | No |
| GO:1901701 | cellular response to oxygen-containing compound | No |
| GO:0032991 | protein-containing complex | No |
| GO:0030659 | cytoplasmic vesicle membrane | No |
| GO:1901698 | response to nitrogen compound | No |
| GO:1901699 | cellular response to nitrogen compound | No |
| GO:0010243 | response to organonitrogen compound | No |
| GO:0032045 | guanyl-nucleotide exchange factor complex | No |
| GO:1901700 | response to oxygen-containing compound | No |
| GO:0098796 | membrane protein complex | No |
| GO:0080171 | lytic vacuole organization | No |
| GO:0048878 | chemical homeostasis | No |
| GO:0048522 | positive regulation of cellular process | No |
| GO:0023051 | regulation of signaling | No |
| GO:0070887 | cellular response to chemical stimulus | No |
| GO:0012506 | vesicle membrane | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0071495 | cellular response to endogenous stimulus | No |
| GO:0007033 | vacuole organization | No |
| GO:0055092 | sterol homeostasis | No |
| GO:0010008 | endosome membrane | No |
| GO:0031090 | organelle membrane | No |
| GO:0071417 | cellular response to organonitrogen compound | No |
| GO:0023056 | positive regulation of signaling | No |
| GO:0016192 | vesicle-mediated transport | No |
| GO:0032006 | regulation of TOR signaling | No |
| GO:0010647 | positive regulation of cell communication | No |
| GO:0042221 | response to chemical | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:1902533 | positive regulation of intracellular signal transduction | No |
| GO:0010646 | regulation of cell communication | No |
| GO:0016020 | membrane | No |
| GO:0043408 | regulation of MAPK cascade | No |
| GO:0001101 | response to acid chemical | No |
| GO:0098588 | bounding membrane of organelle | No |
| GO:0009966 | regulation of signal transduction | No |
| GO:0048518 | positive regulation of biological process | No |
| GO:0048583 | regulation of response to stimulus | No |
| GO:0010033 | response to organic substance | No |
| GO:1902531 | regulation of intracellular signal transduction | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0006996 | organelle organization | No |
| GO:0055088 | lipid homeostasis | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0050896 | response to stimulus | No |
| GO:0042592 | homeostatic process | No |
| GO:0065007 | biological regulation | No |
| GO:0009719 | response to endogenous stimulus | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0048584 | positive regulation of response to stimulus | No |
| GO:0065008 | regulation of biological quality | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 60 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7579 MGACSSCLGRRSKDDYDESEESRLLYEDGSGMQYGSFGDGALGGDDTLEAQRESEALQRVVAKTSSNMVDVFESA PAPHHLLTRAGTAMPFAYSGQGARVARYQHLVSKLMADEDCDPAGVRVDWMVEDDDTDMSENGTATAINTLQKDG GGPLVGTFADAADAMQ |
| Coding | >Ophio5|7579 ATGGGCGCCTGCTCGTCTTGCCTCGGCCGACGGAGCAAGGACGATTACGACGAGAGCGAAGAGAGCCGGCTGCTC TACGAGGACGGCAGCGGTATGCAATACGGTAGCTTTGGCGATGGCGCCCTAGGCGGAGACGACACGCTCGAGGCG CAGAGGGAATCTGAGGCTCTGCAGCGCGTCGTTGCCAAGACATCCAGCAACATGGTAGACGTCTTCGAGTCCGCC CCCGCCCCGCACCATCTGCTTACTCGGGCGGGTACGGCGATGCCTTTCGCCTACTCCGGTCAGGGAGCTCGAGTC GCGCGGTATCAGCACCTGGTATCCAAGCTCATGGCCGACGAGGACTGCGATCCGGCTGGCGTCAGGGTCGACTGG ATGGTCGAGGACGATGATACGGATATGTCGGAAAACGGAACGGCGACTGCCATCAATACGCTGCAGAAAGATGGC GGCGGACCTCTGGTCGGGACCTTTGCCGACGCAGCCGACGCCATGCAA |
| Transcript | >Ophio5|7579 ATGGGCGCCTGCTCGTCTTGCCTCGGCCGACGGAGCAAGGACGATTACGACGAGAGCGAAGAGAGCCGGCTGCTC TACGAGGACGGCAGCGGTATGCAATACGGTAGCTTTGGCGATGGCGCCCTAGGCGGAGACGACACGCTCGAGGCG CAGAGGGAATCTGAGGCTCTGCAGCGCGTCGTTGCCAAGACATCCAGCAACATGGTAGACGTCTTCGAGTCCGCC CCCGCCCCGCACCATCTGCTTACTCGGGCGGGTACGGCGATGCCTTTCGCCTACTCCGGTCAGGGAGCTCGAGTC GCGCGGTATCAGCACCTGGTATCCAAGCTCATGGCCGACGAGGACTGCGATCCGGCTGGCGTCAGGGTCGACTGG ATGGTCGAGGACGATGATACGGATATGTCGGAAAACGGAACGGCGACTGCCATCAATACGCTGCAGAAAGATGGC GGCGGACCTCTGGTCGGGACCTTTGCCGACGCAGCCGACGCCATGCAATGA |
| Gene | >Ophio5|7579 ATGGGCGCCTGCTCGTCTTGCCTCGGCCGACGGAGCAAGGACGATTACGACGAGGTTGGTTCGGCTGCACTGCTG TAGACTCGGCTGGACTGACGATGCCGCCCAGAGCGAAGAGAGCCGGCTGCTCTACGAGGACGGCAGCGGTATGCA ATACGGTAGCTTTGGCGATGGCGCCCTAGGCGGAGACGACACGCTCGAGGCGCAGAGGGAATCTGAGGCTCTGCA GCGCGTCGTTGCCAAGACATCCAGGTCCGTTTTCGTCGTTAACGACAAGAGAATTTGAGGGGGAGGAAGGGTGGG CTAACGTGCATCAACTCAGCAACATGGTAGACGTCTTCGAGTCCGCCCCCGCCCCGCACCATCTGCTTACTCGGG CGGGTACGGCGATGCCTTTCGCCTACTCCGGTCAGGGAGCTCGAGTCGCGCGGTATCAGCACCTGGTATCCAAGC TCATGGCCGACGAGGACTGCGATCCGGCTGGCGTCAGGGTCGACTGGATGGTCGAGGACGATGATACGGATATGT CGGAAAACGGAACGGCGACTGCCATCAATACGCTGCAGAAAGATGGCGGCGGACCTCTGGTCGGGACCTTTGCCG ACGCAGCCGACGCCATGCAATGA |