Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7553
Gene name
Locationscaffold_740:4227..5776
Strand+
Gene length (bp)1549
Transcript length (bp)1434
Coding sequence length (bp)1431
Protein length (aa) 477

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01522 Polysacc_deac_1 Polysaccharide deacetylase 5.8E-25 44 172

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 36 255 2.0E-60
sp|D4AM78|CDA_ARTBC Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 36 252 3.0E-59
sp|Q8DP63|PGDA_STRR6 Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 50 243 4.0E-19
sp|P54865|XYND_CELFI Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 53 234 1.0E-14
sp|Q52845|NODB_RHILO Chitooligosaccharide deacetylase OS=Rhizobium loti (strain MAFF303099) GN=nodB PE=3 SV=2 53 215 3.0E-13
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Swissprot ID Swissprot Description Start End E-value
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 36 255 2.0E-60
sp|D4AM78|CDA_ARTBC Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 36 252 3.0E-59
sp|Q8DP63|PGDA_STRR6 Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 50 243 4.0E-19
sp|P54865|XYND_CELFI Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 53 234 1.0E-14
sp|Q52845|NODB_RHILO Chitooligosaccharide deacetylase OS=Rhizobium loti (strain MAFF303099) GN=nodB PE=3 SV=2 53 215 3.0E-13
sp|Q06702|CDA1_YEAST Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 42 245 7.0E-13
sp|P83513|XY11A_PSEXY Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 43 243 1.0E-12
sp|P50352|NODB_BRAEL Chitooligosaccharide deacetylase OS=Bradyrhizobium elkanii GN=nodB PE=3 SV=1 53 215 3.0E-12
sp|O34798|PDAC_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaC OS=Bacillus subtilis (strain 168) GN=pdaC PE=1 SV=1 35 242 4.0E-12
sp|P04675|NODB_BRASP Chitooligosaccharide deacetylase OS=Bradyrhizobium sp. (strain ANU 289) GN=nodB PE=3 SV=2 53 215 7.0E-12
sp|O34928|PDAA_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaA OS=Bacillus subtilis (strain 168) GN=pdaA PE=1 SV=1 24 213 4.0E-11
sp|P50325|CDA_AMYRO Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 42 242 2.0E-10
sp|P50354|NODB_RHIGA Chitooligosaccharide deacetylase OS=Rhizobium galegae GN=nodB PE=3 SV=1 53 212 2.0E-10
sp|Q04729|YFUM2_GEOSE Uncharacterized 30.6 kDa protein in fumA 3'region OS=Geobacillus stearothermophilus PE=3 SV=1 53 213 3.0E-10
sp|P04339|NODB_RHILV Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. viciae GN=nodB PE=3 SV=1 31 215 4.0E-10
sp|P24150|NODB_RHILP Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. phaseoli GN=nodB PE=3 SV=1 50 215 5.0E-09
sp|O07596|YHEN_BACSU Putative polysaccharide deacetylase YheN OS=Bacillus subtilis (strain 168) GN=yheN PE=3 SV=1 50 232 5.0E-09
sp|P50850|YLXY_BACSU Uncharacterized protein YlxY OS=Bacillus subtilis (strain 168) GN=ylxY PE=3 SV=2 62 247 6.0E-09
sp|Q59674|XY11A_CELJA Bifunctional xylanase/xylan deacetylase OS=Cellvibrio japonicus GN=xyn11A PE=1 SV=1 52 234 1.0E-08
sp|Q07740|NODB_AZOC5 Chitooligosaccharide deacetylase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=nodB PE=3 SV=2 49 215 4.0E-08
sp|P04676|NODB_RHILT Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. trifolii GN=nodB PE=3 SV=1 31 215 4.0E-07
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GO

GO Term Description Terminal node
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Yes
GO:0005975 carbohydrate metabolic process Yes
GO:0016787 hydrolase activity No
GO:0071704 organic substance metabolic process No
GO:0044238 primary metabolic process No
GO:0003824 catalytic activity No
GO:0003674 molecular_function No
GO:0008152 metabolic process No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7553
MLPLLLVSSVLPGVATAQKAACSPVAADQLASQTQVPFGEIITNCTQPNTFALTFDDGPFNFTAELLTTLRKAGV
RATFFINGKNKANIEDFSGILNRMLCDGHQIGSHTFDHKDLVLDGLSESDIVKEMTDLDDKLLLQNSIQMKPTYM
RPPFFSTNETVLAIMKRLEYHVVQSSVDTKDFEFSTEETNGQAVTKFQNELDAGGSISLMHDIFPTTVSLLVPQA
LEILRQKQMKLVTVGECLGDAKQNWYRLPPGMTGGNINGKNCRRRNRNGRKFKNGQSFQSNGTTNVVTRRETGDG
SETERSQSPELNGEIKTDGKPEGERQEDEKPKEEDKTKKKEEEDDKTKKKEEEDNKTKKKEEDDKTERKEEDKPK
EDDKIKTESGKTPEPDESKKDEKQKEDQKLKEEEKLKGTDKNGTGSTITPKLNGTKIDQDSGKGGKNRTEIPGTR
KSALQQQNEGGYSLRKGTRPAAANETR
Coding >Ophio5|7553
ATGTTGCCTCTACTGCTGGTCAGTTCTGTGCTTCCGGGGGTGGCGACGGCGCAGAAAGCAGCCTGCTCCCCCGTG
GCGGCCGATCAATTGGCGTCGCAGACACAAGTCCCCTTCGGCGAGATCATCACCAACTGCACGCAGCCCAATACA
TTCGCCCTTACATTCGACGATGGACCCTTCAACTTTACGGCCGAGCTTCTGACGACGCTGAGAAAGGCCGGCGTC
AGGGCCACCTTTTTCATCAACGGCAAGAACAAGGCCAACATTGAGGATTTCAGTGGTATCTTGAACAGGATGTTG
TGTGATGGACACCAGATTGGCTCTCACACTTTCGATCACAAGGATCTCGTCTTGGATGGCCTTTCTGAGAGTGAT
ATCGTCAAGGAGATGACGGACCTCGACGACAAGCTGCTTCTGCAGAACAGCATCCAAATGAAGCCCACCTACATG
CGGCCACCTTTCTTCAGCACCAACGAGACGGTTCTAGCTATCATGAAGAGGTTGGAGTACCACGTCGTCCAATCC
TCGGTCGACACCAAGGACTTTGAATTCAGCACGGAAGAGACCAACGGCCAAGCCGTCACCAAATTCCAAAACGAG
CTGGACGCGGGCGGCTCCATCTCGCTCATGCACGACATCTTTCCCACAACAGTCAGCCTTCTGGTGCCTCAGGCG
CTGGAGATTCTAAGACAGAAGCAGATGAAACTGGTTACGGTGGGAGAATGCTTGGGCGACGCTAAACAGAACTGG
TATCGGCTTCCACCAGGCATGACGGGAGGGAACATCAATGGGAAGAATTGCAGGCGGCGGAATCGAAATGGAAGG
AAGTTCAAGAATGGACAGAGTTTCCAGTCGAATGGAACAACTAACGTCGTCACGAGGCGGGAGACGGGCGACGGG
AGCGAGACGGAAAGAAGCCAGAGTCCCGAGTTGAATGGGGAAATCAAGACAGATGGGAAGCCGGAGGGGGAGCGG
CAGGAAGATGAGAAGCCAAAGGAGGAGGACAAGACGAAGAAGAAGGAGGAGGAGGACGACAAGACGAAGAAGAAG
GAGGAGGAGGACAACAAGACAAAGAAAAAGGAAGAGGACGACAAGACAGAGAGAAAGGAAGAGGACAAGCCAAAG
GAGGACGACAAAATCAAAACGGAGAGCGGTAAAACACCAGAGCCAGATGAAAGCAAGAAAGATGAGAAACAAAAA
GAGGACCAGAAACTAAAGGAAGAAGAGAAGCTAAAGGGAACCGACAAAAATGGAACGGGAAGCACCATAACTCCA
AAGCTAAATGGAACCAAAATCGACCAAGATTCGGGAAAAGGCGGCAAAAACAGGACAGAAATTCCAGGAACCCGG
AAGTCGGCCCTTCAACAGCAGAACGAAGGGGGTTATTCGCTTAGAAAAGGGACGAGACCGGCAGCGGCCAACGAG
ACGCGA
Transcript >Ophio5|7553
ATGTTGCCTCTACTGCTGGTCAGTTCTGTGCTTCCGGGGGTGGCGACGGCGCAGAAAGCAGCCTGCTCCCCCGTG
GCGGCCGATCAATTGGCGTCGCAGACACAAGTCCCCTTCGGCGAGATCATCACCAACTGCACGCAGCCCAATACA
TTCGCCCTTACATTCGACGATGGACCCTTCAACTTTACGGCCGAGCTTCTGACGACGCTGAGAAAGGCCGGCGTC
AGGGCCACCTTTTTCATCAACGGCAAGAACAAGGCCAACATTGAGGATTTCAGTGGTATCTTGAACAGGATGTTG
TGTGATGGACACCAGATTGGCTCTCACACTTTCGATCACAAGGATCTCGTCTTGGATGGCCTTTCTGAGAGTGAT
ATCGTCAAGGAGATGACGGACCTCGACGACAAGCTGCTTCTGCAGAACAGCATCCAAATGAAGCCCACCTACATG
CGGCCACCTTTCTTCAGCACCAACGAGACGGTTCTAGCTATCATGAAGAGGTTGGAGTACCACGTCGTCCAATCC
TCGGTCGACACCAAGGACTTTGAATTCAGCACGGAAGAGACCAACGGCCAAGCCGTCACCAAATTCCAAAACGAG
CTGGACGCGGGCGGCTCCATCTCGCTCATGCACGACATCTTTCCCACAACAGTCAGCCTTCTGGTGCCTCAGGCG
CTGGAGATTCTAAGACAGAAGCAGATGAAACTGGTTACGGTGGGAGAATGCTTGGGCGACGCTAAACAGAACTGG
TATCGGCTTCCACCAGGCATGACGGGAGGGAACATCAATGGGAAGAATTGCAGGCGGCGGAATCGAAATGGAAGG
AAGTTCAAGAATGGACAGAGTTTCCAGTCGAATGGAACAACTAACGTCGTCACGAGGCGGGAGACGGGCGACGGG
AGCGAGACGGAAAGAAGCCAGAGTCCCGAGTTGAATGGGGAAATCAAGACAGATGGGAAGCCGGAGGGGGAGCGG
CAGGAAGATGAGAAGCCAAAGGAGGAGGACAAGACGAAGAAGAAGGAGGAGGAGGACGACAAGACGAAGAAGAAG
GAGGAGGAGGACAACAAGACAAAGAAAAAGGAAGAGGACGACAAGACAGAGAGAAAGGAAGAGGACAAGCCAAAG
GAGGACGACAAAATCAAAACGGAGAGCGGTAAAACACCAGAGCCAGATGAAAGCAAGAAAGATGAGAAACAAAAA
GAGGACCAGAAACTAAAGGAAGAAGAGAAGCTAAAGGGAACCGACAAAAATGGAACGGGAAGCACCATAACTCCA
AAGCTAAATGGAACCAAAATCGACCAAGATTCGGGAAAAGGCGGCAAAAACAGGACAGAAATTCCAGGAACCCGG
AAGTCGGCCCTTCAACAGCAGAACGAAGGGGGTTATTCGCTTAGAAAAGGGACGAGACCGGCAGCGGCCAACGAG
ACGCGATAA
Gene >Ophio5|7553
ATGTTGCCTCTACTGCTGGTCAGTTCTGTGCTTCCGGGGGTGGCGACGGCGCAGAAAGCAGCCTGCTCCCCCGTG
GCGGCCGATCAATTGGCGTCGCAGACACAAGTCCCCTTCGGCGAGATCATCACCAACTGCACGCAGCCCAATACA
TTCGCCCTTACATTCGACGATGGACCCTTCAACTTTACGGCCGAGCTTCTGACGACGCTGAGAAAGGCCGGCGTC
AGGGCCACCTTTTTCATCAACGGCAAGAACAAGGCCAACATTGAGGATTTCAGTGGTATCTTGAACAGGATGTTG
TGTGATGGACACCAGATTGGCTCTCACACGTGCGTTCATTCATGATGCCTGGTGAGGTGGAAGCTGACGTTCCGC
CTATTGATGCAGTTTCGATCACAAGGATCTCGTCTTGGATGGCCTTTCTGAGAGTGATATCGTCAAGGAGATGAC
GGACCTCGACGACAAGCTGCTTCTGCAGAACAGCATCCAAATGAAGCCCACCTACATGCGGCCACCTTTCTTCAG
CACCAACGAGACGGTTCTAGCTATCATGAAGAGGTTGGAGTACCACGTCGTCCAATCCTCGGTCGACACCAAGGA
CTTTGAATTCAGCACGGAAGAGACCAACGGCCAAGCCGTCACCAAATTCCAAAACGAGCTGGACGCGGGCGGCTC
CATCTCGCTCATGCACGACATCTTTCCCACAACAGTCAGCCTTCTGGTGCCTCAGGCGCTGGAGATTCTAAGACA
GAAGCAGATGAAACGTATGTCTCGAGGGAAGTCGTGTTGAATATGTGAGCAATGCTGACGCGTGACGGCAGTGGT
TACGGTGGGAGAATGCTTGGGCGACGCTAAACAGAACTGGTATCGGCTTCCACCAGGCATGACGGGAGGGAACAT
CAATGGGAAGAATTGCAGGCGGCGGAATCGAAATGGAAGGAAGTTCAAGAATGGACAGAGTTTCCAGTCGAATGG
AACAACTAACGTCGTCACGAGGCGGGAGACGGGCGACGGGAGCGAGACGGAAAGAAGCCAGAGTCCCGAGTTGAA
TGGGGAAATCAAGACAGATGGGAAGCCGGAGGGGGAGCGGCAGGAAGATGAGAAGCCAAAGGAGGAGGACAAGAC
GAAGAAGAAGGAGGAGGAGGACGACAAGACGAAGAAGAAGGAGGAGGAGGACAACAAGACAAAGAAAAAGGAAGA
GGACGACAAGACAGAGAGAAAGGAAGAGGACAAGCCAAAGGAGGACGACAAAATCAAAACGGAGAGCGGTAAAAC
ACCAGAGCCAGATGAAAGCAAGAAAGATGAGAAACAAAAAGAGGACCAGAAACTAAAGGAAGAAGAGAAGCTAAA
GGGAACCGACAAAAATGGAACGGGAAGCACCATAACTCCAAAGCTAAATGGAACCAAAATCGACCAAGATTCGGG
AAAAGGCGGCAAAAACAGGACAGAAATTCCAGGAACCCGGAAGTCGGCCCTTCAACAGCAGAACGAAGGGGGTTA
TTCGCTTAGAAAAGGGACGAGACCGGCAGCGGCCAACGAGACGCGATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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