Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|7539
Gene name
Location	scaffold_74:13728..14595
Strand	-
Gene length (bp)	867
Transcript length (bp)	867
Coding sequence length (bp)	864
Protein length (aa)	288

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00293	NUDIX	NUDIX domain	9.5E-10	6	85

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P91148\|NDX7_CAEEL	Putative nudix hydrolase 7 OS=Caenorhabditis elegans GN=ndx-7 PE=3 SV=2	1	197	8.0E-16
sp\|Q5ZL13\|NUD19_CHICK	Nucleoside diphosphate-linked moiety X motif 19 OS=Gallus gallus GN=NUDT19 PE=2 SV=1	1	198	4.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	468.28	223.70	712.86
CcL	In ants, during behavior modification	85.56	37.95	133.17
CcD	In ants, recently dead	45.31	21.91	68.70

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.000286	yes
CcL	CcD	0.009660	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|7539 MAAEARASASVVVLSPQNEVLMVQRTRTSSYPSALVFPGGNLDGQDGAVAERHEDGPAYRHAAVRECFEETGILL AVGRNGDRLALSQEETETARRRVHAGEVRFSDWLETVGAEVDTDGLIPFTRWITPAFMPRRFTTQMYLHLLPLDG PTPSPSSDGGKENTAVTFCSPTTILSRVATGQAIVFPPQYYLLHLLSDHVEATSPAEGRKRLLTDLPHNDMVICP RPMGKRPDGRLILALDDPGVSELRASGRKGDTRRILLVDFAAAAAAGPTGLEVRQRRGEGAFL
Coding	>Ophio5\|7539 ATGGCGGCGGAAGCGCGGGCCAGCGCTTCGGTGGTGGTGCTATCGCCGCAAAATGAAGTATTAATGGTACAGCGG ACTCGGACGTCATCATACCCATCGGCCTTGGTCTTTCCGGGCGGCAATCTGGATGGGCAAGACGGCGCGGTAGCG GAGAGACACGAGGACGGGCCGGCGTATCGACATGCTGCCGTTCGGGAGTGCTTCGAGGAGACGGGCATCTTGCTG GCTGTAGGGCGAAACGGCGACCGGTTGGCGTTGTCGCAGGAGGAGACGGAGACGGCGAGGCGGCGAGTTCATGCC GGCGAGGTGCGATTCAGTGACTGGTTGGAGACGGTGGGAGCCGAAGTTGATACGGATGGCCTCATCCCCTTTACG CGTTGGATCACGCCGGCCTTTATGCCTCGGCGCTTCACGACGCAAATGTACCTCCATCTCCTCCCACTCGACGGC CCGACGCCCTCTCCCAGCAGCGACGGCGGCAAAGAGAACACGGCAGTTACATTCTGCAGTCCGACGACGATCCTC TCGCGCGTAGCGACCGGCCAAGCCATCGTCTTCCCTCCGCAGTACTATCTGCTACACCTACTGTCCGACCACGTC GAAGCAACGTCGCCAGCCGAGGGGCGCAAGAGGCTACTGACCGACTTACCGCACAACGACATGGTCATCTGCCCG CGGCCGATGGGCAAGAGACCCGACGGTCGCTTGATTCTAGCTCTGGATGATCCGGGCGTGTCGGAGTTGCGCGCC TCGGGTCGCAAGGGCGATACTCGACGTATCTTGCTCGTTGACTTTGCCGCCGCCGCCGCTGCTGGGCCGACGGGG TTGGAGGTGCGGCAGAGGCGGGGTGAAGGAGCGTTTTTG
Transcript	>Ophio5\|7539 ATGGCGGCGGAAGCGCGGGCCAGCGCTTCGGTGGTGGTGCTATCGCCGCAAAATGAAGTATTAATGGTACAGCGG ACTCGGACGTCATCATACCCATCGGCCTTGGTCTTTCCGGGCGGCAATCTGGATGGGCAAGACGGCGCGGTAGCG GAGAGACACGAGGACGGGCCGGCGTATCGACATGCTGCCGTTCGGGAGTGCTTCGAGGAGACGGGCATCTTGCTG GCTGTAGGGCGAAACGGCGACCGGTTGGCGTTGTCGCAGGAGGAGACGGAGACGGCGAGGCGGCGAGTTCATGCC GGCGAGGTGCGATTCAGTGACTGGTTGGAGACGGTGGGAGCCGAAGTTGATACGGATGGCCTCATCCCCTTTACG CGTTGGATCACGCCGGCCTTTATGCCTCGGCGCTTCACGACGCAAATGTACCTCCATCTCCTCCCACTCGACGGC CCGACGCCCTCTCCCAGCAGCGACGGCGGCAAAGAGAACACGGCAGTTACATTCTGCAGTCCGACGACGATCCTC TCGCGCGTAGCGACCGGCCAAGCCATCGTCTTCCCTCCGCAGTACTATCTGCTACACCTACTGTCCGACCACGTC GAAGCAACGTCGCCAGCCGAGGGGCGCAAGAGGCTACTGACCGACTTACCGCACAACGACATGGTCATCTGCCCG CGGCCGATGGGCAAGAGACCCGACGGTCGCTTGATTCTAGCTCTGGATGATCCGGGCGTGTCGGAGTTGCGCGCC TCGGGTCGCAAGGGCGATACTCGACGTATCTTGCTCGTTGACTTTGCCGCCGCCGCCGCTGCTGGGCCGACGGGG TTGGAGGTGCGGCAGAGGCGGGGTGAAGGAGCGTTTTTGTGA
Gene	>Ophio5\|7539 ATGGCGGCGGAAGCGCGGGCCAGCGCTTCGGTGGTGGTGCTATCGCCGCAAAATGAAGTATTAATGGTACAGCGG ACTCGGACGTCATCATACCCATCGGCCTTGGTCTTTCCGGGCGGCAATCTGGATGGGCAAGACGGCGCGGTAGCG GAGAGACACGAGGACGGGCCGGCGTATCGACATGCTGCCGTTCGGGAGTGCTTCGAGGAGACGGGCATCTTGCTG GCTGTAGGGCGAAACGGCGACCGGTTGGCGTTGTCGCAGGAGGAGACGGAGACGGCGAGGCGGCGAGTTCATGCC GGCGAGGTGCGATTCAGTGACTGGTTGGAGACGGTGGGAGCCGAAGTTGATACGGATGGCCTCATCCCCTTTACG CGTTGGATCACGCCGGCCTTTATGCCTCGGCGCTTCACGACGCAAATGTACCTCCATCTCCTCCCACTCGACGGC CCGACGCCCTCTCCCAGCAGCGACGGCGGCAAAGAGAACACGGCAGTTACATTCTGCAGTCCGACGACGATCCTC TCGCGCGTAGCGACCGGCCAAGCCATCGTCTTCCCTCCGCAGTACTATCTGCTACACCTACTGTCCGACCACGTC GAAGCAACGTCGCCAGCCGAGGGGCGCAAGAGGCTACTGACCGACTTACCGCACAACGACATGGTCATCTGCCCG CGGCCGATGGGCAAGAGACCCGACGGTCGCTTGATTCTAGCTCTGGATGATCCGGGCGTGTCGGAGTTGCGCGCC TCGGGTCGCAAGGGCGATACTCGACGTATCTTGCTCGTTGACTTTGCCGCCGCCGCCGCTGCTGGGCCGACGGGG TTGGAGGTGCGGCAGAGGCGGGGTGAAGGAGCGTTTTTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail