Protein ID | Ophio5|7521 |
Gene name | |
Location | scaffold_735:3716..6405 |
Strand | - |
Gene length (bp) | 2689 |
Transcript length (bp) | 2454 |
Coding sequence length (bp) | 2451 |
Protein length (aa) | 817 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03707 | MHYT | Bacterial signalling protein N terminal repeat | 1.0E-05 | 2 | 52 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Lysosome/Vacuole | Transmembrane domain | 0.1786 | 0.0912 | 0.066 | 0.5627 | 0.0624 | 0.0548 | 0.3169 | 0.6508 | 0.4582 | 0.004 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 26 | 48 | 22 |
2 | 55 | 77 | 22 |
3 | 92 | 114 | 22 |
4 | 127 | 149 | 22 |
5 | 169 | 191 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 372 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|7521 MWSMQYIGNRSIHFLQGQPEFQLVYSTGLAVLALFIPIIVLFVAFVIITRHGKVCWVRITLAGFLSGATLVGMHY LADASINNYKPVYHAGNIVGAALIAVFTNIAALAFLFVFESAWTNAWWKRPLCALVLAAAISAENWCAAAGTGYR LRPPHRTGPLLSTKGSIIVVICLTVGGCVFTIFSGLYSYWIKKDYANKAQKVALAAAVFDDRGRIMVSQEGLLPS EVITDTFISTSNNDVFDTSNPVFHWMFWASRNWPRIAHVLGGMEAHVASLSTKRHHKLKLKLLGDDGEAVENYNA ILCELYCLAASSLSTRMKDDLEATGTLWDEIFTTGDISGQSSRTSGAYTGGSDLPMYRSSTSSIGKPQTNSTGEK SDERIDEGHGRGSLMFLVRHVSSRRDVEKLEAAGFRFAELHRVLGSIRTGMQIKTPDFAARLRIMSNFTEQDADL RAGVHVGLFAVRARVDFGGFDVLVQRKAKNLLPTVHLQKESLRPWQKEILKGIHGMTTPDIIQNLDVEHFESARE RHFTRQLLEAITSLRTWTDQPVFDEARLNTSVVQVPCSSIDKSATCSVLAFQLVLPIHQRISFRNFEAIPLQFFK IRQFFSQGFTGARHSSTGAIEKNGLHFPPSSPTLGSGGGGPTTFMEFVRPGRQFRKNQPHGVSHHALAQSLKRLS VVANGRNDAATPSAASNHASAQNGDMQPLTAAMAAPGQADNRHGASILVSQEVVVNYQQSSDAEDDDMEDLDKME KASIESHSGGMQSTAARQYRPNLPTPPEEESYSVTATGRDTEVSQDEASFVDELLQSCMEKYKPKKR |
Coding | >Ophio5|7521 ATGTGGTCCATGCAATACATCGGGAATAGGTCCATCCACTTCCTCCAGGGGCAGCCAGAATTCCAGCTCGTCTAC AGCACCGGTCTCGCTGTCCTTGCACTCTTCATCCCCATCATCGTCCTGTTTGTTGCTTTCGTCATCATCACCCGC CACGGGAAGGTCTGTTGGGTGCGCATCACCTTGGCGGGCTTTCTTTCGGGAGCCACGCTTGTTGGGATGCATTAC CTTGCCGACGCATCCATCAACAATTACAAGCCTGTGTACCACGCCGGCAACATTGTAGGTGCTGCCCTGATAGCA GTCTTTACCAATATCGCCGCGCTCGCCTTCCTCTTCGTCTTCGAGTCCGCCTGGACAAACGCCTGGTGGAAGAGG CCCCTTTGTGCCCTGGTTCTGGCAGCGGCAATCTCTGCCGAGAACTGGTGCGCGGCCGCTGGAACAGGATACAGG CTGCGTCCTCCGCACCGTACTGGACCCTTGTTGTCAACCAAGGGCTCCATCATTGTTGTCATCTGCTTGACGGTT GGCGGCTGCGTTTTCACCATCTTCAGCGGCCTCTACTCCTACTGGATTAAGAAGGATTACGCCAACAAGGCACAA AAGGTGGCTTTGGCAGCAGCCGTCTTTGATGATCGCGGAAGGATCATGGTCAGTCAGGAGGGCCTTCTTCCAAGC GAAGTCATTACCGATACCTTTATCTCGACTTCAAACAACGACGTCTTTGACACATCAAACCCCGTCTTCCACTGG ATGTTTTGGGCGTCGCGGAATTGGCCCAGAATTGCCCATGTATTGGGAGGCATGGAAGCACACGTAGCCAGTCTC TCGACTAAGCGCCACCACAAACTCAAGCTCAAGCTGCTCGGAGACGATGGAGAGGCCGTGGAGAATTACAACGCA ATTCTCTGTGAGCTTTACTGCCTCGCAGCTTCATCTCTTTCCACCAGGATGAAGGACGACCTCGAGGCCACGGGA ACTCTTTGGGACGAGATCTTCACCACAGGCGATATATCGGGTCAATCTAGTCGCACGTCTGGTGCCTACACCGGG GGTTCCGACTTGCCCATGTATCGCTCCTCGACCAGTTCCATCGGCAAGCCACAGACCAACAGCACCGGGGAGAAG AGCGATGAGAGGATCGACGAGGGACACGGACGAGGATCTCTCATGTTCCTTGTTCGTCATGTCAGCAGCCGGCGA GACGTCGAGAAGCTGGAAGCCGCAGGGTTTCGATTCGCCGAGCTGCATCGCGTTCTCGGTTCTATCCGGACCGGC ATGCAGATCAAGACGCCGGATTTCGCAGCCCGTCTGCGCATCATGTCCAATTTCACGGAACAAGATGCCGATCTC CGAGCCGGGGTTCACGTCGGGCTCTTTGCCGTCCGCGCCAGGGTCGACTTTGGCGGCTTCGATGTCCTCGTTCAG CGGAAAGCAAAGAACCTGCTTCCCACCGTTCATCTGCAGAAAGAATCGCTGAGGCCGTGGCAAAAGGAGATTCTC AAAGGGATCCACGGAATGACTACTCCCGATATCATACAGAACTTGGATGTTGAGCATTTTGAGTCGGCCAGAGAG CGTCATTTCACCAGACAGCTTCTCGAGGCCATCACATCGCTCCGGACATGGACCGACCAGCCCGTTTTCGACGAA GCCAGACTCAATACTAGCGTCGTCCAGGTGCCGTGCTCTTCCATCGACAAGTCGGCCACCTGCTCTGTGCTGGCA TTCCAGTTGGTTCTGCCGATCCACCAACGCATCTCTTTCCGGAATTTCGAAGCCATCCCACTGCAGTTCTTCAAG ATACGGCAGTTCTTCAGCCAGGGATTCACCGGGGCTCGTCACTCTTCCACGGGGGCCATCGAGAAGAATGGGCTG CACTTCCCCCCAAGTAGCCCGACTCTCGGCTCTGGAGGTGGAGGTCCCACGACCTTCATGGAGTTCGTCAGGCCA GGGCGTCAATTCAGGAAAAACCAACCTCACGGCGTGTCACACCATGCCTTGGCACAGAGCTTGAAGAGACTATCG GTCGTGGCTAATGGCCGTAACGACGCGGCGACGCCTAGTGCGGCAAGCAACCATGCTAGTGCCCAAAACGGAGAC ATGCAACCCCTGACCGCGGCTATGGCGGCCCCAGGGCAAGCAGACAATCGCCATGGCGCCAGCATTCTCGTCTCG CAAGAGGTTGTGGTGAATTACCAACAGTCATCTGATGCAGAGGACGACGACATGGAAGACTTGGACAAGATGGAG AAGGCTTCCATCGAGTCACACAGCGGCGGCATGCAATCGACGGCGGCCCGCCAGTACCGGCCCAACTTGCCAACT CCGCCAGAGGAAGAGTCGTACAGCGTGACGGCTACCGGGCGTGATACCGAGGTGTCACAAGATGAGGCGAGCTTC GTCGACGAGCTGCTGCAGAGCTGCATGGAGAAGTACAAGCCCAAGAAGAGG |
Transcript | >Ophio5|7521 ATGTGGTCCATGCAATACATCGGGAATAGGTCCATCCACTTCCTCCAGGGGCAGCCAGAATTCCAGCTCGTCTAC AGCACCGGTCTCGCTGTCCTTGCACTCTTCATCCCCATCATCGTCCTGTTTGTTGCTTTCGTCATCATCACCCGC CACGGGAAGGTCTGTTGGGTGCGCATCACCTTGGCGGGCTTTCTTTCGGGAGCCACGCTTGTTGGGATGCATTAC CTTGCCGACGCATCCATCAACAATTACAAGCCTGTGTACCACGCCGGCAACATTGTAGGTGCTGCCCTGATAGCA GTCTTTACCAATATCGCCGCGCTCGCCTTCCTCTTCGTCTTCGAGTCCGCCTGGACAAACGCCTGGTGGAAGAGG CCCCTTTGTGCCCTGGTTCTGGCAGCGGCAATCTCTGCCGAGAACTGGTGCGCGGCCGCTGGAACAGGATACAGG CTGCGTCCTCCGCACCGTACTGGACCCTTGTTGTCAACCAAGGGCTCCATCATTGTTGTCATCTGCTTGACGGTT GGCGGCTGCGTTTTCACCATCTTCAGCGGCCTCTACTCCTACTGGATTAAGAAGGATTACGCCAACAAGGCACAA AAGGTGGCTTTGGCAGCAGCCGTCTTTGATGATCGCGGAAGGATCATGGTCAGTCAGGAGGGCCTTCTTCCAAGC GAAGTCATTACCGATACCTTTATCTCGACTTCAAACAACGACGTCTTTGACACATCAAACCCCGTCTTCCACTGG ATGTTTTGGGCGTCGCGGAATTGGCCCAGAATTGCCCATGTATTGGGAGGCATGGAAGCACACGTAGCCAGTCTC TCGACTAAGCGCCACCACAAACTCAAGCTCAAGCTGCTCGGAGACGATGGAGAGGCCGTGGAGAATTACAACGCA ATTCTCTGTGAGCTTTACTGCCTCGCAGCTTCATCTCTTTCCACCAGGATGAAGGACGACCTCGAGGCCACGGGA ACTCTTTGGGACGAGATCTTCACCACAGGCGATATATCGGGTCAATCTAGTCGCACGTCTGGTGCCTACACCGGG GGTTCCGACTTGCCCATGTATCGCTCCTCGACCAGTTCCATCGGCAAGCCACAGACCAACAGCACCGGGGAGAAG AGCGATGAGAGGATCGACGAGGGACACGGACGAGGATCTCTCATGTTCCTTGTTCGTCATGTCAGCAGCCGGCGA GACGTCGAGAAGCTGGAAGCCGCAGGGTTTCGATTCGCCGAGCTGCATCGCGTTCTCGGTTCTATCCGGACCGGC ATGCAGATCAAGACGCCGGATTTCGCAGCCCGTCTGCGCATCATGTCCAATTTCACGGAACAAGATGCCGATCTC CGAGCCGGGGTTCACGTCGGGCTCTTTGCCGTCCGCGCCAGGGTCGACTTTGGCGGCTTCGATGTCCTCGTTCAG CGGAAAGCAAAGAACCTGCTTCCCACCGTTCATCTGCAGAAAGAATCGCTGAGGCCGTGGCAAAAGGAGATTCTC AAAGGGATCCACGGAATGACTACTCCCGATATCATACAGAACTTGGATGTTGAGCATTTTGAGTCGGCCAGAGAG CGTCATTTCACCAGACAGCTTCTCGAGGCCATCACATCGCTCCGGACATGGACCGACCAGCCCGTTTTCGACGAA GCCAGACTCAATACTAGCGTCGTCCAGGTGCCGTGCTCTTCCATCGACAAGTCGGCCACCTGCTCTGTGCTGGCA TTCCAGTTGGTTCTGCCGATCCACCAACGCATCTCTTTCCGGAATTTCGAAGCCATCCCACTGCAGTTCTTCAAG ATACGGCAGTTCTTCAGCCAGGGATTCACCGGGGCTCGTCACTCTTCCACGGGGGCCATCGAGAAGAATGGGCTG CACTTCCCCCCAAGTAGCCCGACTCTCGGCTCTGGAGGTGGAGGTCCCACGACCTTCATGGAGTTCGTCAGGCCA GGGCGTCAATTCAGGAAAAACCAACCTCACGGCGTGTCACACCATGCCTTGGCACAGAGCTTGAAGAGACTATCG GTCGTGGCTAATGGCCGTAACGACGCGGCGACGCCTAGTGCGGCAAGCAACCATGCTAGTGCCCAAAACGGAGAC ATGCAACCCCTGACCGCGGCTATGGCGGCCCCAGGGCAAGCAGACAATCGCCATGGCGCCAGCATTCTCGTCTCG CAAGAGGTTGTGGTGAATTACCAACAGTCATCTGATGCAGAGGACGACGACATGGAAGACTTGGACAAGATGGAG AAGGCTTCCATCGAGTCACACAGCGGCGGCATGCAATCGACGGCGGCCCGCCAGTACCGGCCCAACTTGCCAACT CCGCCAGAGGAAGAGTCGTACAGCGTGACGGCTACCGGGCGTGATACCGAGGTGTCACAAGATGAGGCGAGCTTC GTCGACGAGCTGCTGCAGAGCTGCATGGAGAAGTACAAGCCCAAGAAGAGGTAA |
Gene | >Ophio5|7521 ATGTGGTCCATGGTGGGTGCTGGCATTCCACCTTTAATGTCTCGACGATGGCTAACAAGCCTTAGCAATACATCG GGAATAGGTCCATCCACTTCCTCCAGGGGCAGCCAGAATTCCAGCTCGTCTACAGCACCGGTCTCGCTGTCCTTG CACTCTTCATCCCCATCATCGTCCTGTTTGTTGCTTTCGTCATCATCACCCGCCACGGGAAGGTCTGTTGGGTGC GCATCACCTTGGCGGGCTTTCTTTCGGGAGCCACGCTTGTTGGGATGCATTACCTTGCCGACGCATCCATCAACA ATTACAAGCCTGTGTACCACGCCGGCAACATTGTAGGTGCTGCCCTGATAGCAGTCTTTACCAATATCGCCGCGC TCGCCTTCCTCTTCGTCTTCGAGTCCGCCTGGACAAACGCCTGGTGGAAGAGGCCCCTTTGTGCCCTGGTTCTGG CAGCGGCAATCTCTGCCGAGAACTGGTGCGCGGCCGCTGGAACAGGATACAGGCTGCGTCCTCCGCACCGTACTG GACCCTTGTTGTCAACCAAGGGCTCCATCATTGTTGTCATCTGCTTGGTTAGTCAACTTGACACCGCTTCGGGTC ATCCTATTCTAAGATGGAACAGACGGTTGGCGGCTGCGTTTTCACCATCTTCAGCGGCCTCTACTCCTACTGGAT TAAGAAGGATTACGCCAACAAGGCACAAAAGGTGGCTTTGGCAGCAGCCGTCTTTGATGATCGCGGAAGGATCAT GGTCAGTCAGGAGGGCCTTCTTCCAAGCGAAGTCATTACCGATACCTTTATCTCGACTGTGGGTTTCCGGTGGCC TTTTCTATCCCTTTATACCATACAATACGACACAGCTGACACATATGACCAGTCAAACAACGACGTCTTTGACAC ATCAAACCCCGTCTTCCACTGGATGTTTTGGGCGTCGCGGAATTGGCCCAGAATTGCCCATGTATTGGGAGGCAT GGAAGCACACGTAGCCAGTCTCTCGACTAAGCGCCACCACAAACTCAAGCTCAAGCTGCTCGGAGACGATGGAGA GGCCGTGGAGAATTACAACGCAATTCTCTGTGAGCTTTACTGCCTCGCAGCTTCATCTCTTTCCACCAGGATGAA GGACGACCTCGAGGCCACGGGAACTCTTTGGGACGAGATCTTCACCACAGGCGATATATCGGGTCAATCTAGTCG CACGTCTGGTGCCTACACCGGGGGTTCCGACTTGCCCATGTATCGCTCCTCGACCAGTTCCATCGGCAAGCCACA GACCAACAGCACCGGGGAGAAGAGCGATGAGAGGATCGACGAGGGACACGGACGAGGATCTCTCATGTTCCTTGT TCGTCATGTCAGCAGCCGGCGAGACGTCGAGAAGCTGGAAGCCGCAGGGTTTCGATTCGCCGAGCTGCATCGCGT TCTCGGTTCTATCCGGACCGGCATGCAGATCAAGACGCCGGATTTCGCAGCCCGTCTGCGCATCATGTCCAATTT CACGGAACAAGATGCCGATCTCCGAGCCGGGGTTCACGTCGGGCTCTTTGCCGTCCGCGCCAGGGTCGACTTTGG CGGCTTCGATGTCCTCGTTCAGCGGAAAGCAAAGAACCTGCTTCCCACCGTTCATCTGCAGAAAGAATCGCTGAG GCCGTGGCAAAAGGAGATTCTCAAAGGGATCCACGGAATGACTACTCCCGATATCATACAGAACTTGGATGTTGA GCATTTTGAGTCGGCCAGAGAGCGTCATTTCACCAGACAGCTTCTCGAGGCCATCACATCGCTCCGGACATGGAC CGACCAGCCCGTTTTCGACGAAGCCAGACTCAATACTAGCGTCGTCCAGGTGCCGTGCTCTTCCATCGACAAGTC GGCCACCTGCTCTGTGCTGGCATTCCAGTTGGTTCTGCCGATCCACCAACGCATCTCTTTCCGGAATTTCGAAGC CATCCCACTGCAGTTCTTCAAGATACGGCAGTTCTTCAGCCAGGGATTCACCGGGGCTCGTCACTCTTCCACGGG GGCCATCGAGAAGAATGGGCTGCACTTCCCCCCAAGTAGCCCGACTCTCGGCTCTGGAGGTGGAGGTCCCACGAC CTTCATGGAGTTCGTCAGGCCAGGGCGTCAATTCAGGAAAAACCAACCTCACGGCGTGTCACACCATGCCTTGGC ACAGAGCTTGAAGAGACTATCGGTCGTGGCTAATGGCCGTAACGACGCGGCGACGCCTAGTGCGGCAAGCAACCA TGCTAGTGCCCAAAACGGAGACATGCAACCCCTGACCGCGGCTATGGCGGCCCCAGGGCAAGCAGACAATCGCCA TGGCGCCAGCATTCTCGTCTCGCAAGAGGTTGTGGTGAATTACCAACAGGTGCGTTCATGCTGCCGCAGCATCGC CTTGGGTTCAAGTGCAGAGTCTAATGTTTCGTTACAGTCATCTGATGCAGAGGACGACGACATGGAAGACTTGGA CAAGATGGAGAAGGCTTCCATCGAGTCACACAGCGGCGGCATGCAATCGACGGCGGCCCGCCAGTACCGGCCCAA CTTGCCAACTCCGCCAGAGGAAGAGTCGTACAGCGTGACGGCTACCGGGCGTGATACCGAGGTGTCACAAGATGA GGCGAGCTTCGTCGACGAGCTGCTGCAGAGCTGCATGGAGAAGTACAAGCCCAAGAAGAGGTAA |