Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7481
Gene name
Locationscaffold_727:1155..2983
Strand-
Gene length (bp)1828
Transcript length (bp)1647
Coding sequence length (bp)1644
Protein length (aa) 548

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02136 NTF2 Nuclear transport factor 2 (NTF2) domain 7.7E-23 45 159
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.5E-05 418 479

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1 39 531 3.0E-46
sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus GN=G3bp2 PE=1 SV=2 44 159 1.0E-21
sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii GN=G3BP2 PE=2 SV=1 44 159 2.0E-21
sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens GN=G3BP2 PE=1 SV=2 44 159 2.0E-21
sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1 44 492 2.0E-19
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1 39 531 3.0E-46
sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus GN=G3bp2 PE=1 SV=2 44 159 1.0E-21
sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii GN=G3BP2 PE=2 SV=1 44 159 2.0E-21
sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens GN=G3BP2 PE=1 SV=2 44 159 2.0E-21
sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1 44 492 2.0E-19
sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii GN=G3BP1 PE=2 SV=1 44 159 3.0E-19
sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus GN=G3BP PE=2 SV=1 44 159 4.0E-19
sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus GN=G3bp1 PE=1 SV=1 44 159 8.0E-19
sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1 37 158 7.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003676 nucleic acid binding No
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7481
MATNGNFAHQEQYKSADQYPVAATGADSTAAAASGNSNLSKDEVGWFFVEQYYTTLSKSPEKLHLFYGKRSQFVQ
GLEAEVANVSVGRQVIQERIKQLDFQDCKVRVSNVDSQASFDNIVIQVIGETSNKGAEPKKFVQTFVLAQQPSGY
FVLNDILRYIKDEHDDEPAEAPAEAPVKEVAAPAATAPAVSMETAAPAPEGELTDKEAVKDDSSSGLNASVVNKK
LEEVVEADKAVNGGDVAVAAAEPGQASDTKAGVKSEAALAADPVTTAHELAVEDAEAPEKPQDPSPTPVPQPAPP
VHTEPVVPAEPPAPPKPMTWASRAAAAAGPRPVVPLPKTATSPASTQSRTPVPGTAAPPATVATAAAAQQPSTPT
APAAESMTKESSGWQTAGADSKRQNRPQSMSGNFSEKEGTMGYVKYVTDKVQDTDLRNVLTAHGELTYFDINRQK
NCAFVEYKTVEGYQAAVSANPHVVNGENIVVEPRRPKATAYGGSNYGSGRGSLSGRGRGGYDGTRGGGQGNTRGN
FPGQSRGRGGIPRGRGGPQASNA
Coding >Ophio5|7481
ATGGCGACGAACGGGAATTTCGCCCATCAGGAGCAGTACAAATCTGCCGACCAGTACCCGGTTGCCGCCACCGGT
GCAGATAGCACCGCTGCCGCCGCCTCGGGGAACAGCAATCTCTCCAAAGATGAGGTCGGGTGGTTCTTCGTCGAG
CAGTACTATACCACCCTCAGCAAGTCGCCCGAGAAACTTCACCTCTTCTACGGCAAGCGCTCGCAGTTCGTCCAG
GGCCTAGAGGCCGAAGTCGCCAACGTCTCTGTCGGCCGCCAGGTTATCCAGGAGCGTATCAAGCAGCTCGACTTC
CAGGATTGCAAAGTCCGGGTGTCCAACGTTGACTCGCAGGCTTCTTTCGACAACATTGTTATTCAAGTCATCGGC
GAGACCTCCAACAAGGGTGCTGAGCCCAAGAAATTCGTCCAGACGTTTGTCCTGGCGCAGCAGCCTTCTGGCTAC
TTTGTCCTCAACGACATCCTGCGATACATCAAGGATGAGCATGACGACGAGCCCGCCGAGGCTCCAGCTGAGGCT
CCTGTCAAGGAGGTGGCGGCCCCCGCCGCTACCGCCCCCGCCGTCTCGATGGAGACTGCCGCTCCTGCGCCTGAA
GGCGAGCTTACGGACAAGGAGGCCGTCAAGGACGACTCCTCCAGCGGCCTCAATGCCAGCGTCGTGAATAAGAAA
CTCGAGGAGGTCGTTGAGGCTGACAAGGCTGTCAACGGGGGCGATGTCGCCGTCGCCGCCGCCGAGCCCGGCCAG
GCTTCGGACACCAAGGCGGGCGTCAAGTCCGAGGCCGCCTTGGCTGCGGATCCGGTCACCACGGCCCACGAGCTT
GCCGTGGAGGACGCCGAGGCGCCGGAGAAGCCCCAGGATCCGAGCCCGACGCCGGTGCCGCAGCCGGCCCCGCCG
GTTCACACCGAGCCCGTCGTCCCCGCTGAACCCCCGGCGCCTCCCAAGCCCATGACATGGGCCAGCCGCGCGGCC
GCCGCGGCCGGGCCCAGACCCGTTGTGCCTCTCCCCAAGACGGCCACATCGCCAGCGTCGACTCAAAGCCGGACA
CCGGTCCCAGGTACGGCCGCCCCCCCAGCCACGGTAGCCACGGCAGCTGCGGCTCAGCAGCCGAGCACGCCCACG
GCCCCGGCCGCCGAGAGCATGACCAAGGAGTCGTCTGGCTGGCAGACGGCTGGTGCCGATTCGAAGCGCCAGAAC
CGACCGCAGTCCATGTCGGGCAATTTTTCCGAGAAGGAGGGCACGATGGGATACGTCAAATACGTGACGGACAAG
GTTCAGGATACAGACCTCCGGAACGTCCTGACCGCTCACGGCGAGTTGACGTACTTTGACATTAACCGTCAGAAG
AACTGCGCCTTCGTCGAGTACAAGACGGTCGAGGGCTACCAGGCCGCCGTGTCGGCCAATCCGCACGTGGTGAAT
GGTGAGAACATTGTGGTGGAGCCCCGACGGCCCAAGGCGACTGCATATGGAGGCAGCAACTACGGGTCCGGGCGA
GGCAGCCTGTCCGGACGAGGCCGAGGAGGGTACGACGGCACCCGCGGCGGGGGACAGGGCAATACTCGAGGCAAC
TTTCCCGGTCAGAGTCGAGGACGCGGGGGCATTCCCCGTGGCCGCGGTGGGCCGCAGGCCAGCAATGCC
Transcript >Ophio5|7481
ATGGCGACGAACGGGAATTTCGCCCATCAGGAGCAGTACAAATCTGCCGACCAGTACCCGGTTGCCGCCACCGGT
GCAGATAGCACCGCTGCCGCCGCCTCGGGGAACAGCAATCTCTCCAAAGATGAGGTCGGGTGGTTCTTCGTCGAG
CAGTACTATACCACCCTCAGCAAGTCGCCCGAGAAACTTCACCTCTTCTACGGCAAGCGCTCGCAGTTCGTCCAG
GGCCTAGAGGCCGAAGTCGCCAACGTCTCTGTCGGCCGCCAGGTTATCCAGGAGCGTATCAAGCAGCTCGACTTC
CAGGATTGCAAAGTCCGGGTGTCCAACGTTGACTCGCAGGCTTCTTTCGACAACATTGTTATTCAAGTCATCGGC
GAGACCTCCAACAAGGGTGCTGAGCCCAAGAAATTCGTCCAGACGTTTGTCCTGGCGCAGCAGCCTTCTGGCTAC
TTTGTCCTCAACGACATCCTGCGATACATCAAGGATGAGCATGACGACGAGCCCGCCGAGGCTCCAGCTGAGGCT
CCTGTCAAGGAGGTGGCGGCCCCCGCCGCTACCGCCCCCGCCGTCTCGATGGAGACTGCCGCTCCTGCGCCTGAA
GGCGAGCTTACGGACAAGGAGGCCGTCAAGGACGACTCCTCCAGCGGCCTCAATGCCAGCGTCGTGAATAAGAAA
CTCGAGGAGGTCGTTGAGGCTGACAAGGCTGTCAACGGGGGCGATGTCGCCGTCGCCGCCGCCGAGCCCGGCCAG
GCTTCGGACACCAAGGCGGGCGTCAAGTCCGAGGCCGCCTTGGCTGCGGATCCGGTCACCACGGCCCACGAGCTT
GCCGTGGAGGACGCCGAGGCGCCGGAGAAGCCCCAGGATCCGAGCCCGACGCCGGTGCCGCAGCCGGCCCCGCCG
GTTCACACCGAGCCCGTCGTCCCCGCTGAACCCCCGGCGCCTCCCAAGCCCATGACATGGGCCAGCCGCGCGGCC
GCCGCGGCCGGGCCCAGACCCGTTGTGCCTCTCCCCAAGACGGCCACATCGCCAGCGTCGACTCAAAGCCGGACA
CCGGTCCCAGGTACGGCCGCCCCCCCAGCCACGGTAGCCACGGCAGCTGCGGCTCAGCAGCCGAGCACGCCCACG
GCCCCGGCCGCCGAGAGCATGACCAAGGAGTCGTCTGGCTGGCAGACGGCTGGTGCCGATTCGAAGCGCCAGAAC
CGACCGCAGTCCATGTCGGGCAATTTTTCCGAGAAGGAGGGCACGATGGGATACGTCAAATACGTGACGGACAAG
GTTCAGGATACAGACCTCCGGAACGTCCTGACCGCTCACGGCGAGTTGACGTACTTTGACATTAACCGTCAGAAG
AACTGCGCCTTCGTCGAGTACAAGACGGTCGAGGGCTACCAGGCCGCCGTGTCGGCCAATCCGCACGTGGTGAAT
GGTGAGAACATTGTGGTGGAGCCCCGACGGCCCAAGGCGACTGCATATGGAGGCAGCAACTACGGGTCCGGGCGA
GGCAGCCTGTCCGGACGAGGCCGAGGAGGGTACGACGGCACCCGCGGCGGGGGACAGGGCAATACTCGAGGCAAC
TTTCCCGGTCAGAGTCGAGGACGCGGGGGCATTCCCCGTGGCCGCGGTGGGCCGCAGGCCAGCAATGCCTAG
Gene >Ophio5|7481
ATGGCGACGAACGGGAATTTCGCCCATCAGGAGCAGTACAAATCTGCCGACCAGTACCCGGTTGCCGCCACCGGT
GCAGATAGCACCGCTGCCGCCGCCTCGGGGAACAGCAATCTCTCCAAAGATGAGGTCGGGTGGTTCTTCGTCGAG
CAGTACTATACCACCCTCAGCAAGTCGCCCGAGAAACTTCACGTAGGTGCTCTCTGCTCGCACACCACAGGGCAA
CTGCTGACTGGCAAATCAGCTCTTCTACGGCAAGCGCTCGCAGTTCGTCCAGGGCCTAGAGGCCGAAGTCGCCAA
CGTCTCTGTCGGCCGCCAGGTTTGTCCTCGCTCTGCTCTACTCCTCCCATCTCCACTCTGCGCTGACACTGGCAT
CGTCACCAGGTTATCCAGGAGCGTATCAAGCAGCTCGACTTCCAGGATTGCAAAGTCCGGGTGTCCAACGTTGAC
TCGCAGGCTTCTTTCGACAACATTGTTATTCAAGTCATCGGCGAGACCTCCAACAAGGGTGCTGAGCCCAAGAAA
TTCGTCCAGACGTTTGTCCTGGCGCAGCAGCCTTCTGGCTACTTTGTCCTCAACGACATCCTGCGATACATCAAG
GATGAGCATGACGACGAGCCCGCCGAGGCTCCAGCTGAGGCTCCTGTCAAGGAGGTGGCGGCCCCCGCCGCTACC
GCCCCCGCCGTCTCGATGGAGACTGCCGCTCCTGCGCCTGAAGGCGAGCTTACGGACAAGGAGGCCGTCAAGGAC
GACTCCTCCAGCGGCCTCAATGCCAGCGTCGTGAATAAGAAACTCGAGGAGGTCGTTGAGGCTGACAAGGCTGTC
AACGGGGGCGATGTCGCCGTCGCCGCCGCCGAGCCCGGCCAGGCTTCGGACACCAAGGCGGGCGTCAAGTCCGAG
GCCGCCTTGGCTGCGGATCCGGTCACCACGGCCCACGAGCTTGCCGTGGAGGACGCCGAGGCGCCGGAGAAGCCC
CAGGATCCGAGCCCGACGCCGGTGCCGCAGCCGGCCCCGCCGGTTCACACCGAGCCCGTCGTCCCCGCTGAACCC
CCGGCGCCTCCCAAGCCCATGACATGGGCCAGCCGCGCGGCCGCCGCGGCCGGGCCCAGACCCGTTGTGCCTCTC
CCCAAGACGGCCACATCGCCAGCGTCGACTCAAAGCCGGACACCGGTCCCAGGTACGGCCGCCCCCCCAGCCACG
GTAGCCACGGCAGCTGCGGCTCAGCAGCCGAGCACGCCCACGGCCCCGGCCGCCGAGAGCATGACCAAGGAGTCG
TCTGGCTGGCAGACGGCTGGTGCCGATTCGAAGCGCCAGAACCGACCGCAGTCCATGTCGGGCAATTTTTCCGAG
AAGGAGGGCACGATGGGATACGTCAAATACGTGACGGACAAGGTTCAGGATACAGACCTCCGGAACGTCCTGACC
GCTCACGGCGAGTTGACGTACTTTGACATTAACCGTCAGAAGGTATAGTGCCACCGCGCGGCACACGTGGCCCGT
CCGTCTCCGCTGACCCCAAGTCGTTGCTCAGAACTGCGCCTTCGTCGAGTACAAGACGGTCGAGGGCTACCAGGC
CGCCGTGTCGGCCAATCCGCACGTGGTGAATGGTGAGAACATTGTGGTGGAGCCCCGACGGCCCAAGGCGACTGC
ATATGGAGGCAGCAACTACGGGTCCGGGCGAGGCAGCCTGTCCGGACGAGGCCGAGGAGGGTACGACGGCACCCG
CGGCGGGGGACAGGGCAATACTCGAGGCAACTTTCCCGGTCAGAGTCGAGGACGCGGGGGCATTCCCCGTGGCCG
CGGTGGGCCGCAGGCCAGCAATGCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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