Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|7481
Gene name
Location	scaffold_727:1155..2983
Strand	-
Gene length (bp)	1828
Transcript length (bp)	1647
Coding sequence length (bp)	1644
Protein length (aa)	548

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF02136	NTF2	Nuclear transport factor 2 (NTF2) domain	7.7E-23	45	159
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	3.5E-05	418	479

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O94260\|G3BP_SCHPO	Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1	39	531	3.0E-46
sp\|P97379\|G3BP2_MOUSE	Ras GTPase-activating protein-binding protein 2 OS=Mus musculus GN=G3bp2 PE=1 SV=2	44	159	1.0E-21
sp\|Q5R9L3\|G3BP2_PONAB	Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii GN=G3BP2 PE=2 SV=1	44	159	2.0E-21
sp\|Q9UN86\|G3BP2_HUMAN	Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens GN=G3BP2 PE=1 SV=2	44	159	2.0E-21
sp\|Q13283\|G3BP1_HUMAN	Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1	44	492	2.0E-19

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O94260\|G3BP_SCHPO	Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1	39	531	3.0E-46
sp\|P97379\|G3BP2_MOUSE	Ras GTPase-activating protein-binding protein 2 OS=Mus musculus GN=G3bp2 PE=1 SV=2	44	159	1.0E-21
sp\|Q5R9L3\|G3BP2_PONAB	Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii GN=G3BP2 PE=2 SV=1	44	159	2.0E-21
sp\|Q9UN86\|G3BP2_HUMAN	Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens GN=G3BP2 PE=1 SV=2	44	159	2.0E-21
sp\|Q13283\|G3BP1_HUMAN	Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1	44	492	2.0E-19
sp\|Q5RB87\|G3BP1_PONAB	Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii GN=G3BP1 PE=2 SV=1	44	159	3.0E-19
sp\|Q32LC7\|G3BP1_BOVIN	Ras GTPase-activating protein-binding protein 1 OS=Bos taurus GN=G3BP PE=2 SV=1	44	159	4.0E-19
sp\|P97855\|G3BP1_MOUSE	Ras GTPase-activating protein-binding protein 1 OS=Mus musculus GN=G3bp1 PE=1 SV=1	44	159	8.0E-19
sp\|Q9C7F5\|NTF2_ARATH	Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1	37	158	7.0E-06

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GO

GO Term	Description	Terminal node
GO:0003723	RNA binding	Yes
GO:0003676	nucleic acid binding	No
GO:0097159	organic cyclic compound binding	No
GO:0005488	binding	No
GO:0003674	molecular_function	No
GO:1901363	heterocyclic compound binding	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 70	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|7481 MATNGNFAHQEQYKSADQYPVAATGADSTAAAASGNSNLSKDEVGWFFVEQYYTTLSKSPEKLHLFYGKRSQFVQ GLEAEVANVSVGRQVIQERIKQLDFQDCKVRVSNVDSQASFDNIVIQVIGETSNKGAEPKKFVQTFVLAQQPSGY FVLNDILRYIKDEHDDEPAEAPAEAPVKEVAAPAATAPAVSMETAAPAPEGELTDKEAVKDDSSSGLNASVVNKK LEEVVEADKAVNGGDVAVAAAEPGQASDTKAGVKSEAALAADPVTTAHELAVEDAEAPEKPQDPSPTPVPQPAPP VHTEPVVPAEPPAPPKPMTWASRAAAAAGPRPVVPLPKTATSPASTQSRTPVPGTAAPPATVATAAAAQQPSTPT APAAESMTKESSGWQTAGADSKRQNRPQSMSGNFSEKEGTMGYVKYVTDKVQDTDLRNVLTAHGELTYFDINRQK NCAFVEYKTVEGYQAAVSANPHVVNGENIVVEPRRPKATAYGGSNYGSGRGSLSGRGRGGYDGTRGGGQGNTRGN FPGQSRGRGGIPRGRGGPQASNA
Coding	>Ophio5\|7481 ATGGCGACGAACGGGAATTTCGCCCATCAGGAGCAGTACAAATCTGCCGACCAGTACCCGGTTGCCGCCACCGGT GCAGATAGCACCGCTGCCGCCGCCTCGGGGAACAGCAATCTCTCCAAAGATGAGGTCGGGTGGTTCTTCGTCGAG CAGTACTATACCACCCTCAGCAAGTCGCCCGAGAAACTTCACCTCTTCTACGGCAAGCGCTCGCAGTTCGTCCAG GGCCTAGAGGCCGAAGTCGCCAACGTCTCTGTCGGCCGCCAGGTTATCCAGGAGCGTATCAAGCAGCTCGACTTC CAGGATTGCAAAGTCCGGGTGTCCAACGTTGACTCGCAGGCTTCTTTCGACAACATTGTTATTCAAGTCATCGGC GAGACCTCCAACAAGGGTGCTGAGCCCAAGAAATTCGTCCAGACGTTTGTCCTGGCGCAGCAGCCTTCTGGCTAC TTTGTCCTCAACGACATCCTGCGATACATCAAGGATGAGCATGACGACGAGCCCGCCGAGGCTCCAGCTGAGGCT CCTGTCAAGGAGGTGGCGGCCCCCGCCGCTACCGCCCCCGCCGTCTCGATGGAGACTGCCGCTCCTGCGCCTGAA GGCGAGCTTACGGACAAGGAGGCCGTCAAGGACGACTCCTCCAGCGGCCTCAATGCCAGCGTCGTGAATAAGAAA CTCGAGGAGGTCGTTGAGGCTGACAAGGCTGTCAACGGGGGCGATGTCGCCGTCGCCGCCGCCGAGCCCGGCCAG GCTTCGGACACCAAGGCGGGCGTCAAGTCCGAGGCCGCCTTGGCTGCGGATCCGGTCACCACGGCCCACGAGCTT GCCGTGGAGGACGCCGAGGCGCCGGAGAAGCCCCAGGATCCGAGCCCGACGCCGGTGCCGCAGCCGGCCCCGCCG GTTCACACCGAGCCCGTCGTCCCCGCTGAACCCCCGGCGCCTCCCAAGCCCATGACATGGGCCAGCCGCGCGGCC GCCGCGGCCGGGCCCAGACCCGTTGTGCCTCTCCCCAAGACGGCCACATCGCCAGCGTCGACTCAAAGCCGGACA CCGGTCCCAGGTACGGCCGCCCCCCCAGCCACGGTAGCCACGGCAGCTGCGGCTCAGCAGCCGAGCACGCCCACG GCCCCGGCCGCCGAGAGCATGACCAAGGAGTCGTCTGGCTGGCAGACGGCTGGTGCCGATTCGAAGCGCCAGAAC CGACCGCAGTCCATGTCGGGCAATTTTTCCGAGAAGGAGGGCACGATGGGATACGTCAAATACGTGACGGACAAG GTTCAGGATACAGACCTCCGGAACGTCCTGACCGCTCACGGCGAGTTGACGTACTTTGACATTAACCGTCAGAAG AACTGCGCCTTCGTCGAGTACAAGACGGTCGAGGGCTACCAGGCCGCCGTGTCGGCCAATCCGCACGTGGTGAAT GGTGAGAACATTGTGGTGGAGCCCCGACGGCCCAAGGCGACTGCATATGGAGGCAGCAACTACGGGTCCGGGCGA GGCAGCCTGTCCGGACGAGGCCGAGGAGGGTACGACGGCACCCGCGGCGGGGGACAGGGCAATACTCGAGGCAAC TTTCCCGGTCAGAGTCGAGGACGCGGGGGCATTCCCCGTGGCCGCGGTGGGCCGCAGGCCAGCAATGCC
Transcript	>Ophio5\|7481 ATGGCGACGAACGGGAATTTCGCCCATCAGGAGCAGTACAAATCTGCCGACCAGTACCCGGTTGCCGCCACCGGT GCAGATAGCACCGCTGCCGCCGCCTCGGGGAACAGCAATCTCTCCAAAGATGAGGTCGGGTGGTTCTTCGTCGAG CAGTACTATACCACCCTCAGCAAGTCGCCCGAGAAACTTCACCTCTTCTACGGCAAGCGCTCGCAGTTCGTCCAG GGCCTAGAGGCCGAAGTCGCCAACGTCTCTGTCGGCCGCCAGGTTATCCAGGAGCGTATCAAGCAGCTCGACTTC CAGGATTGCAAAGTCCGGGTGTCCAACGTTGACTCGCAGGCTTCTTTCGACAACATTGTTATTCAAGTCATCGGC GAGACCTCCAACAAGGGTGCTGAGCCCAAGAAATTCGTCCAGACGTTTGTCCTGGCGCAGCAGCCTTCTGGCTAC TTTGTCCTCAACGACATCCTGCGATACATCAAGGATGAGCATGACGACGAGCCCGCCGAGGCTCCAGCTGAGGCT CCTGTCAAGGAGGTGGCGGCCCCCGCCGCTACCGCCCCCGCCGTCTCGATGGAGACTGCCGCTCCTGCGCCTGAA GGCGAGCTTACGGACAAGGAGGCCGTCAAGGACGACTCCTCCAGCGGCCTCAATGCCAGCGTCGTGAATAAGAAA CTCGAGGAGGTCGTTGAGGCTGACAAGGCTGTCAACGGGGGCGATGTCGCCGTCGCCGCCGCCGAGCCCGGCCAG GCTTCGGACACCAAGGCGGGCGTCAAGTCCGAGGCCGCCTTGGCTGCGGATCCGGTCACCACGGCCCACGAGCTT GCCGTGGAGGACGCCGAGGCGCCGGAGAAGCCCCAGGATCCGAGCCCGACGCCGGTGCCGCAGCCGGCCCCGCCG GTTCACACCGAGCCCGTCGTCCCCGCTGAACCCCCGGCGCCTCCCAAGCCCATGACATGGGCCAGCCGCGCGGCC GCCGCGGCCGGGCCCAGACCCGTTGTGCCTCTCCCCAAGACGGCCACATCGCCAGCGTCGACTCAAAGCCGGACA CCGGTCCCAGGTACGGCCGCCCCCCCAGCCACGGTAGCCACGGCAGCTGCGGCTCAGCAGCCGAGCACGCCCACG GCCCCGGCCGCCGAGAGCATGACCAAGGAGTCGTCTGGCTGGCAGACGGCTGGTGCCGATTCGAAGCGCCAGAAC CGACCGCAGTCCATGTCGGGCAATTTTTCCGAGAAGGAGGGCACGATGGGATACGTCAAATACGTGACGGACAAG GTTCAGGATACAGACCTCCGGAACGTCCTGACCGCTCACGGCGAGTTGACGTACTTTGACATTAACCGTCAGAAG AACTGCGCCTTCGTCGAGTACAAGACGGTCGAGGGCTACCAGGCCGCCGTGTCGGCCAATCCGCACGTGGTGAAT GGTGAGAACATTGTGGTGGAGCCCCGACGGCCCAAGGCGACTGCATATGGAGGCAGCAACTACGGGTCCGGGCGA GGCAGCCTGTCCGGACGAGGCCGAGGAGGGTACGACGGCACCCGCGGCGGGGGACAGGGCAATACTCGAGGCAAC TTTCCCGGTCAGAGTCGAGGACGCGGGGGCATTCCCCGTGGCCGCGGTGGGCCGCAGGCCAGCAATGCCTAG
Gene	>Ophio5\|7481 ATGGCGACGAACGGGAATTTCGCCCATCAGGAGCAGTACAAATCTGCCGACCAGTACCCGGTTGCCGCCACCGGT GCAGATAGCACCGCTGCCGCCGCCTCGGGGAACAGCAATCTCTCCAAAGATGAGGTCGGGTGGTTCTTCGTCGAG CAGTACTATACCACCCTCAGCAAGTCGCCCGAGAAACTTCACGTAGGTGCTCTCTGCTCGCACACCACAGGGCAA CTGCTGACTGGCAAATCAGCTCTTCTACGGCAAGCGCTCGCAGTTCGTCCAGGGCCTAGAGGCCGAAGTCGCCAA CGTCTCTGTCGGCCGCCAGGTTTGTCCTCGCTCTGCTCTACTCCTCCCATCTCCACTCTGCGCTGACACTGGCAT CGTCACCAGGTTATCCAGGAGCGTATCAAGCAGCTCGACTTCCAGGATTGCAAAGTCCGGGTGTCCAACGTTGAC TCGCAGGCTTCTTTCGACAACATTGTTATTCAAGTCATCGGCGAGACCTCCAACAAGGGTGCTGAGCCCAAGAAA TTCGTCCAGACGTTTGTCCTGGCGCAGCAGCCTTCTGGCTACTTTGTCCTCAACGACATCCTGCGATACATCAAG GATGAGCATGACGACGAGCCCGCCGAGGCTCCAGCTGAGGCTCCTGTCAAGGAGGTGGCGGCCCCCGCCGCTACC GCCCCCGCCGTCTCGATGGAGACTGCCGCTCCTGCGCCTGAAGGCGAGCTTACGGACAAGGAGGCCGTCAAGGAC GACTCCTCCAGCGGCCTCAATGCCAGCGTCGTGAATAAGAAACTCGAGGAGGTCGTTGAGGCTGACAAGGCTGTC AACGGGGGCGATGTCGCCGTCGCCGCCGCCGAGCCCGGCCAGGCTTCGGACACCAAGGCGGGCGTCAAGTCCGAG GCCGCCTTGGCTGCGGATCCGGTCACCACGGCCCACGAGCTTGCCGTGGAGGACGCCGAGGCGCCGGAGAAGCCC CAGGATCCGAGCCCGACGCCGGTGCCGCAGCCGGCCCCGCCGGTTCACACCGAGCCCGTCGTCCCCGCTGAACCC CCGGCGCCTCCCAAGCCCATGACATGGGCCAGCCGCGCGGCCGCCGCGGCCGGGCCCAGACCCGTTGTGCCTCTC CCCAAGACGGCCACATCGCCAGCGTCGACTCAAAGCCGGACACCGGTCCCAGGTACGGCCGCCCCCCCAGCCACG GTAGCCACGGCAGCTGCGGCTCAGCAGCCGAGCACGCCCACGGCCCCGGCCGCCGAGAGCATGACCAAGGAGTCG TCTGGCTGGCAGACGGCTGGTGCCGATTCGAAGCGCCAGAACCGACCGCAGTCCATGTCGGGCAATTTTTCCGAG AAGGAGGGCACGATGGGATACGTCAAATACGTGACGGACAAGGTTCAGGATACAGACCTCCGGAACGTCCTGACC GCTCACGGCGAGTTGACGTACTTTGACATTAACCGTCAGAAGGTATAGTGCCACCGCGCGGCACACGTGGCCCGT CCGTCTCCGCTGACCCCAAGTCGTTGCTCAGAACTGCGCCTTCGTCGAGTACAAGACGGTCGAGGGCTACCAGGC CGCCGTGTCGGCCAATCCGCACGTGGTGAATGGTGAGAACATTGTGGTGGAGCCCCGACGGCCCAAGGCGACTGC ATATGGAGGCAGCAACTACGGGTCCGGGCGAGGCAGCCTGTCCGGACGAGGCCGAGGAGGGTACGACGGCACCCG CGGCGGGGGACAGGGCAATACTCGAGGCAACTTTCCCGGTCAGAGTCGAGGACGCGGGGGCATTCCCCGTGGCCG CGGTGGGCCGCAGGCCAGCAATGCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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