Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7474
Gene name
Locationscaffold_723:90..534
Strand+
Gene length (bp)444
Transcript length (bp)444
Coding sequence length (bp)441
Protein length (aa) 147

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12697 Abhydrolase_6 Alpha/beta hydrolase family 1.7E-14 28 137
PF00561 Abhydrolase_1 alpha/beta hydrolase fold 7.7E-13 28 132
PF12146 Hydrolase_4 Serine aminopeptidase, S33 4.9E-11 27 126
PF00975 Thioesterase Thioesterase domain 5.3E-06 31 119

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q3SZ73|ABHDB_BOVIN Alpha/beta hydrolase domain-containing protein 11 OS=Bos taurus GN=ABHD11 PE=2 SV=1 10 114 2.0E-07
sp|P26174|BCHO_RHOCA Magnesium-chelatase 30 kDa subunit OS=Rhodobacter capsulatus GN=bchO PE=3 SV=1 16 133 4.0E-06

GO

GO Term Description Terminal node
GO:0009058 biosynthetic process Yes
GO:0008152 metabolic process No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.5

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7474
MPWLTLAHHEPVFYSWTQAEAPSSSLTLLFIHGLGSSNTFFFTVIPSLVLDGYSCVAVDTPGSALSAQRSSDCDV
ATLSDVASSVIAHLGLHPCRLVVVGHSMGGLVASEMALRLDVRAVALIGPVEPSEGLADRFAARVKLVQAGK
Coding >Ophio5|7474
ATGCCCTGGCTCACTCTCGCCCATCATGAGCCCGTCTTCTACAGCTGGACGCAAGCCGAGGCCCCCTCGTCCAGC
CTCACACTCCTCTTCATCCACGGCCTAGGCTCCTCCAACACCTTCTTCTTTACCGTCATCCCCTCTCTCGTCTTA
GACGGCTACTCATGTGTAGCCGTCGACACGCCCGGCAGCGCTCTCTCGGCACAACGAAGTAGCGACTGCGATGTA
GCCACCCTCAGTGACGTGGCCAGCAGCGTCATCGCCCATCTGGGTCTCCATCCGTGCCGGCTCGTCGTCGTCGGA
CATTCCATGGGCGGCCTCGTCGCTAGCGAGATGGCTCTACGCCTTGATGTCCGGGCCGTCGCTCTGATTGGACCG
GTCGAGCCGTCAGAAGGCCTGGCTGACCGGTTCGCCGCTCGTGTCAAGCTCGTTCAAGCTGGTAAG
Transcript >Ophio5|7474
ATGCCCTGGCTCACTCTCGCCCATCATGAGCCCGTCTTCTACAGCTGGACGCAAGCCGAGGCCCCCTCGTCCAGC
CTCACACTCCTCTTCATCCACGGCCTAGGCTCCTCCAACACCTTCTTCTTTACCGTCATCCCCTCTCTCGTCTTA
GACGGCTACTCATGTGTAGCCGTCGACACGCCCGGCAGCGCTCTCTCGGCACAACGAAGTAGCGACTGCGATGTA
GCCACCCTCAGTGACGTGGCCAGCAGCGTCATCGCCCATCTGGGTCTCCATCCGTGCCGGCTCGTCGTCGTCGGA
CATTCCATGGGCGGCCTCGTCGCTAGCGAGATGGCTCTACGCCTTGATGTCCGGGCCGTCGCTCTGATTGGACCG
GTCGAGCCGTCAGAAGGCCTGGCTGACCGGTTCGCCGCTCGTGTCAAGCTCGTTCAAGCTGGTAAGTAA
Gene >Ophio5|7474
ATGCCCTGGCTCACTCTCGCCCATCATGAGCCCGTCTTCTACAGCTGGACGCAAGCCGAGGCCCCCTCGTCCAGC
CTCACACTCCTCTTCATCCACGGCCTAGGCTCCTCCAACACCTTCTTCTTTACCGTCATCCCCTCTCTCGTCTTA
GACGGCTACTCATGTGTAGCCGTCGACACGCCCGGCAGCGCTCTCTCGGCACAACGAAGTAGCGACTGCGATGTA
GCCACCCTCAGTGACGTGGCCAGCAGCGTCATCGCCCATCTGGGTCTCCATCCGTGCCGGCTCGTCGTCGTCGGA
CATTCCATGGGCGGCCTCGTCGCTAGCGAGATGGCTCTACGCCTTGATGTCCGGGCCGTCGCTCTGATTGGACCG
GTCGAGCCGTCAGAAGGCCTGGCTGACCGGTTCGCCGCTCGTGTCAAGCTCGTTCAAGCTGGTAAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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