Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7449
Gene name
Locationscaffold_72:15473..15930
Strand+
Gene length (bp)457
Transcript length (bp)288
Coding sequence length (bp)285
Protein length (aa) 95

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06522 B12D NADH-ubiquinone reductase complex 1 MLRQ subunit 1.9E-05 50 88

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.5

Transmembrane Domains

Domain # Start End Length
1 52 71 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7449
MRSTLALRMFRPTQRMMFRPSPRFRRPLPDEEQAGHTISQRLRKLKEIPAELIPLAAVVGLALFAAGYSIVRKFM
TDKNLRLWRSSRQPAGRDNH
Coding >Ophio5|7449
ATGCGCTCTACACTCGCCCTCAGAATGTTTCGACCGACGCAGCGGATGATGTTTCGTCCGTCGCCCCGGTTTAGG
CGACCACTTCCCGATGAGGAACAGGCCGGCCACACCATCTCTCAACGGCTGCGCAAGCTAAAGGAAATTCCGGCC
GAACTGATACCGCTCGCTGCCGTCGTTGGACTCGCCCTCTTCGCTGCTGGCTACTCAATCGTGAGAAAGTTTATG
ACAGACAAAAATCTTCGACTATGGAGGTCCAGTAGGCAACCCGCCGGCCGAGACAACCAC
Transcript >Ophio5|7449
ATGCGCTCTACACTCGCCCTCAGAATGTTTCGACCGACGCAGCGGATGATGTTTCGTCCGTCGCCCCGGTTTAGG
CGACCACTTCCCGATGAGGAACAGGCCGGCCACACCATCTCTCAACGGCTGCGCAAGCTAAAGGAAATTCCGGCC
GAACTGATACCGCTCGCTGCCGTCGTTGGACTCGCCCTCTTCGCTGCTGGCTACTCAATCGTGAGAAAGTTTATG
ACAGACAAAAATCTTCGACTATGGAGGTCCAGTAGGCAACCCGCCGGCCGAGACAACCACTGA
Gene >Ophio5|7449
ATGCGCTCTACACTCGCCCTCAGAATGTTTCGACCGACGCAGCGGATGATGTTTCGTCCGTCGCCCCGGTTTAGG
CGACCACTTCCCGTGAGTACGAGAGATGAGACGCTCGTCTGGGCTGGAGCTGACGCCATCGCGCCTTGGTAGGAT
GAGGAACAGGCCGGTACGTTGCACCGACGACAACCAAATCTTGGGACCCGACGCTGATACCGAAAAGGCCACACC
ATCTCTCAACGGCTGCGCAAGCTAAAGGAAATTCCGGCCGAACTGATACCGCTCGGTAACCATGTCCGACCAGCT
TCTGAGAGCAGTTACGTGGCGCTAACCCTGGCCAGCTGCCGTCGTTGGACTCGCCCTCTTCGCTGCTGGCTACTC
AATCGTGAGAAAGTTTATGACAGACAAAAATCTTCGACTATGGAGGTCCAGTAGGCAACCCGCCGGCCGAGACAA
CCACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail