Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|7447
Gene name
Location	scaffold_72:13427..14276
Strand	+
Gene length (bp)	849
Transcript length (bp)	849
Coding sequence length (bp)	846
Protein length (aa)	282

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13019	Sde2_N_Ubi	Silencing defective 2 N-terminal ubiquitin domain	5.1E-67	7	166

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O14113\|SDE2_SCHPO	Telomere maintenance protein SDE2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sde2 PE=3 SV=1	53	163	6.0E-19
sp\|Q07G43\|SDE2_XENTR	Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1	66	205	5.0E-12
sp\|Q7T293\|SDE2_DANRE	Protein SDE2 homolog OS=Danio rerio GN=sde2 PE=2 SV=2	83	205	1.0E-11
sp\|Q6NRI5\|SDE2_XENLA	Protein SDE2 homolog OS=Xenopus laevis GN=sde2 PE=2 SV=1	62	205	5.0E-11
sp\|Q5BJN8\|SDE2_RAT	Protein SDE2 homolog OS=Rattus norvegicus GN=Sde2 PE=1 SV=2	43	158	1.0E-10

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O14113\|SDE2_SCHPO	Telomere maintenance protein SDE2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sde2 PE=3 SV=1	53	163	6.0E-19
sp\|Q07G43\|SDE2_XENTR	Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1	66	205	5.0E-12
sp\|Q7T293\|SDE2_DANRE	Protein SDE2 homolog OS=Danio rerio GN=sde2 PE=2 SV=2	83	205	1.0E-11
sp\|Q6NRI5\|SDE2_XENLA	Protein SDE2 homolog OS=Xenopus laevis GN=sde2 PE=2 SV=1	62	205	5.0E-11
sp\|Q5BJN8\|SDE2_RAT	Protein SDE2 homolog OS=Rattus norvegicus GN=Sde2 PE=1 SV=2	43	158	1.0E-10
sp\|Q5RET9\|SDE2_PONAB	Protein SDE2 homolog OS=Pongo abelii GN=SDE2 PE=2 SV=1	88	158	1.0E-10
sp\|Q6IQ49\|SDE2_HUMAN	Protein SDE2 homolog OS=Homo sapiens GN=SDE2 PE=1 SV=1	88	158	2.0E-10
sp\|Q8K1J5\|SDE2_MOUSE	Protein SDE2 homolog OS=Mus musculus GN=Sde2 PE=1 SV=1	43	158	6.0E-10

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 26	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|7447 MAPKNLNVLVSTFSGLSLPSTVVLPVPPTTTITQLRQSLDEKLPQSDIRLIITTLSNKQLPEQSEIPLSTFLSTA DDDFLSLRLGVPVCGGKGGFGSQLRAAGGRMSSRKNRNQEDHGSSRNLDGRRLRTVNEAKALAEYLAIKPDMEKE EKDKRRKRWEEVVEMSAKKEAEIRSGGTGRLDGKWVEEKEESNERTRHAVLAAMRDGKYTDNLLSTSSGSTPTEQ GNSQAGSDEGDKASSKESSPPSEPETTGKSKPRTFFGFEEDDEFMSSEDDMDSTVPQ
Coding	>Ophio5\|7447 ATGGCTCCCAAAAACCTCAACGTCCTGGTCTCGACTTTCTCTGGCCTGAGCCTGCCATCGACTGTTGTCTTACCA GTACCACCAACAACTACCATCACTCAACTCCGTCAGAGCCTCGATGAAAAACTACCTCAGAGCGACATCAGACTC ATCATCACCACCCTCTCCAACAAACAACTTCCGGAGCAGTCAGAAATCCCCCTGTCCACGTTTCTCTCTACAGCC GACGACGACTTCCTTTCTCTGCGCCTTGGTGTTCCAGTATGTGGTGGCAAGGGTGGATTCGGATCCCAGCTTCGA GCCGCCGGTGGTCGTATGTCATCTCGGAAGAACCGCAATCAAGAAGACCACGGCTCAAGCCGAAATCTGGACGGT CGCAGACTACGGACCGTAAATGAAGCCAAGGCCCTCGCTGAGTATCTCGCTATCAAACCAGATATGGAGAAGGAG GAAAAGGACAAGCGCCGGAAGCGATGGGAGGAAGTTGTTGAGATGTCTGCGAAGAAAGAGGCCGAGATTCGATCC GGCGGCACCGGTCGTCTCGACGGCAAATGGGTTGAGGAAAAGGAGGAGAGCAATGAGAGGACCCGGCATGCTGTG CTCGCCGCCATGAGGGACGGAAAATACACAGACAATCTTCTCAGCACATCCTCTGGCTCTACGCCTACGGAACAA GGTAATAGCCAAGCCGGCTCCGACGAGGGAGACAAGGCCAGTTCCAAGGAATCATCGCCTCCGTCCGAACCAGAG ACTACTGGAAAGAGCAAGCCGAGGACGTTTTTTGGGTTCGAGGAGGATGATGAATTCATGAGTTCCGAAGACGAC ATGGACTCGACAGTGCCACAA
Transcript	>Ophio5\|7447 ATGGCTCCCAAAAACCTCAACGTCCTGGTCTCGACTTTCTCTGGCCTGAGCCTGCCATCGACTGTTGTCTTACCA GTACCACCAACAACTACCATCACTCAACTCCGTCAGAGCCTCGATGAAAAACTACCTCAGAGCGACATCAGACTC ATCATCACCACCCTCTCCAACAAACAACTTCCGGAGCAGTCAGAAATCCCCCTGTCCACGTTTCTCTCTACAGCC GACGACGACTTCCTTTCTCTGCGCCTTGGTGTTCCAGTATGTGGTGGCAAGGGTGGATTCGGATCCCAGCTTCGA GCCGCCGGTGGTCGTATGTCATCTCGGAAGAACCGCAATCAAGAAGACCACGGCTCAAGCCGAAATCTGGACGGT CGCAGACTACGGACCGTAAATGAAGCCAAGGCCCTCGCTGAGTATCTCGCTATCAAACCAGATATGGAGAAGGAG GAAAAGGACAAGCGCCGGAAGCGATGGGAGGAAGTTGTTGAGATGTCTGCGAAGAAAGAGGCCGAGATTCGATCC GGCGGCACCGGTCGTCTCGACGGCAAATGGGTTGAGGAAAAGGAGGAGAGCAATGAGAGGACCCGGCATGCTGTG CTCGCCGCCATGAGGGACGGAAAATACACAGACAATCTTCTCAGCACATCCTCTGGCTCTACGCCTACGGAACAA GGTAATAGCCAAGCCGGCTCCGACGAGGGAGACAAGGCCAGTTCCAAGGAATCATCGCCTCCGTCCGAACCAGAG ACTACTGGAAAGAGCAAGCCGAGGACGTTTTTTGGGTTCGAGGAGGATGATGAATTCATGAGTTCCGAAGACGAC ATGGACTCGACAGTGCCACAATGA
Gene	>Ophio5\|7447 ATGGCTCCCAAAAACCTCAACGTCCTGGTCTCGACTTTCTCTGGCCTGAGCCTGCCATCGACTGTTGTCTTACCA GTACCACCAACAACTACCATCACTCAACTCCGTCAGAGCCTCGATGAAAAACTACCTCAGAGCGACATCAGACTC ATCATCACCACCCTCTCCAACAAACAACTTCCGGAGCAGTCAGAAATCCCCCTGTCCACGTTTCTCTCTACAGCC GACGACGACTTCCTTTCTCTGCGCCTTGGTGTTCCAGTATGTGGTGGCAAGGGTGGATTCGGATCCCAGCTTCGA GCCGCCGGTGGTCGTATGTCATCTCGGAAGAACCGCAATCAAGAAGACCACGGCTCAAGCCGAAATCTGGACGGT CGCAGACTACGGACCGTAAATGAAGCCAAGGCCCTCGCTGAGTATCTCGCTATCAAACCAGATATGGAGAAGGAG GAAAAGGACAAGCGCCGGAAGCGATGGGAGGAAGTTGTTGAGATGTCTGCGAAGAAAGAGGCCGAGATTCGATCC GGCGGCACCGGTCGTCTCGACGGCAAATGGGTTGAGGAAAAGGAGGAGAGCAATGAGAGGACCCGGCATGCTGTG CTCGCCGCCATGAGGGACGGAAAATACACAGACAATCTTCTCAGCACATCCTCTGGCTCTACGCCTACGGAACAA GGTAATAGCCAAGCCGGCTCCGACGAGGGAGACAAGGCCAGTTCCAAGGAATCATCGCCTCCGTCCGAACCAGAG ACTACTGGAAAGAGCAAGCCGAGGACGTTTTTTGGGTTCGAGGAGGATGATGAATTCATGAGTTCCGAAGACGAC ATGGACTCGACAGTGCCACAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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