© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7423 |
| Gene name | |
| Location | scaffold_714:2825..4393 |
| Strand | - |
| Gene length (bp) | 1568 |
| Transcript length (bp) | 1515 |
| Coding sequence length (bp) | 1512 |
| Protein length (aa) | 504 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04857 | CAF1 | CAF1 family ribonuclease | 4.4E-10 | 109 | 245 |
| PF04857 | CAF1 | CAF1 family ribonuclease | 1.0E-09 | 270 | 374 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3ZC01|CNOT7_BOVIN | CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1 | 99 | 398 | 6.0E-86 |
| sp|Q60809|CNOT7_MOUSE | CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1 | 99 | 398 | 6.0E-86 |
| sp|Q9UIV1|CNOT7_HUMAN | CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3 | 99 | 398 | 7.0E-86 |
| sp|Q5ZJV9|CNOT7_CHICK | CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1 | 99 | 398 | 7.0E-86 |
| sp|Q08BM8|CNOT7_DANRE | CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1 | 99 | 398 | 2.0E-85 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3ZC01|CNOT7_BOVIN | CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1 | 99 | 398 | 6.0E-86 |
| sp|Q60809|CNOT7_MOUSE | CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1 | 99 | 398 | 6.0E-86 |
| sp|Q9UIV1|CNOT7_HUMAN | CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3 | 99 | 398 | 7.0E-86 |
| sp|Q5ZJV9|CNOT7_CHICK | CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1 | 99 | 398 | 7.0E-86 |
| sp|Q08BM8|CNOT7_DANRE | CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1 | 99 | 398 | 2.0E-85 |
| sp|A4II96|CNOT7_XENTR | CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1 | 105 | 398 | 4.0E-85 |
| sp|Q3KQ85|CNOT7_XENLA | CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=1 SV=1 | 99 | 398 | 4.0E-84 |
| sp|Q9UFF9|CNOT8_HUMAN | CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1 | 101 | 398 | 1.0E-83 |
| sp|Q9D8X5|CNOT8_MOUSE | CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1 | 101 | 398 | 1.0E-83 |
| sp|Q9SAI2|CAF1F_ARATH | Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1 | 105 | 401 | 2.0E-81 |
| sp|Q9SKZ2|CAF1G_ARATH | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2 | 105 | 405 | 2.0E-78 |
| sp|O74856|CAF1_SCHPO | Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=caf1 PE=1 SV=2 | 106 | 398 | 2.0E-78 |
| sp|Q9LEU4|CAF1J_ARATH | Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1 | 106 | 401 | 5.0E-74 |
| sp|Q17345|CNOT7_CAEEL | CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1 | 105 | 398 | 5.0E-66 |
| sp|Q9S9P2|CAF1B_ARATH | Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=1 SV=1 | 105 | 408 | 1.0E-62 |
| sp|Q9FMS6|CAF1K_ARATH | Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1 | 106 | 399 | 2.0E-57 |
| sp|Q9LXM2|CAF1I_ARATH | Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1 | 107 | 399 | 4.0E-56 |
| sp|P39008|POP2_YEAST | Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POP2 PE=1 SV=2 | 95 | 397 | 6.0E-50 |
| sp|Q9SHJ0|CAF1A_ARATH | Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1 | 107 | 398 | 3.0E-31 |
| sp|O64773|CAF1E_ARATH | Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1 | 108 | 377 | 3.0E-26 |
| sp|Q9SFX6|CAF1C_ARATH | Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=3 SV=1 | 108 | 383 | 7.0E-24 |
| sp|Q9LXM4|CAF1H_ARATH | Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1 | 118 | 374 | 2.0E-21 |
| sp|Q9C6M9|CAF1D_ARATH | Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=3 SV=1 | 108 | 383 | 3.0E-21 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 59.58 | 32.27 | 86.88 |
| CcL | In ants, during behavior modification | 67.67 | 36.51 | 98.82 |
| CcD | In ants, recently dead | 59.65 | 32.51 | 86.79 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.623518 | no |
| SC16a | CcD | 0.996201 | no |
| CcL | CcD | 0.619976 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7423 MPPQIRGFGGGPGVGGPFHQPGFPSHGQPQGAPMGGNQYMGANAQMNPFAAAAGFADSGFGSQNARMGFAHGPAA GLPQPQHGGQAQHNVLMDHPIIKTQPNKGRIREVWKHNLYDEMAVLRDLVDRYPYIAMDTEFPGVVSRPMGGFRG KSDYHYQCLRTNVDMLKVIQIGLTLFNEDGETPPARPMADHAGLAGRRNANQGPFPYSWQFNFKFSLKEDMYNEK SIESLQQAGIDFGLLERDGIDPHEFASLLIPSGLVCFDNVRWISFHGGYDFGYLTKLLICSPLPNDEVDFDHKMK LYFPTTFDVKHLMKYAIKLHNSGLLTPSDPNSTEILQKFEHKSGLENIAETLKVKRIGSAHQAGSDSLLTGKVFF QMRDKIFNGDIPEEHVGKVWGLGIPDVSLVMGSMMGQSAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXX XXTTTTTTTPIPTTRPRKQTAARAPARPARPASASSARPRLRVTTRTVWVAWAP |
| Coding | >Ophio5|7423 ATGCCACCGCAGATCAGGGGCTTCGGCGGCGGGCCCGGCGTGGGTGGGCCATTTCATCAGCCTGGCTTTCCTTCC CACGGCCAGCCGCAGGGCGCGCCCATGGGAGGCAACCAGTACATGGGGGCCAACGCCCAGATGAACCCCTTTGCC GCTGCCGCTGGCTTCGCCGACTCGGGTTTCGGTAGTCAGAACGCGCGCATGGGATTCGCACACGGGCCCGCCGCC GGCTTGCCGCAGCCTCAGCATGGTGGCCAGGCTCAGCACAATGTCCTGATGGACCATCCCATCATCAAGACGCAG CCGAACAAGGGGAGGATACGGGAGGTGTGGAAGCATAATCTCTACGACGAGATGGCCGTTCTGAGGGATCTGGTA GACCGATATCCCTACATCGCCATGGACACAGAGTTTCCGGGCGTCGTCTCGAGGCCGATGGGTGGCTTTCGCGGA AAGAGTGACTATCACTACCAATGCTTGCGGACCAACGTCGACATGCTCAAGGTGATCCAAATCGGCCTGACGCTG TTCAACGAAGACGGAGAGACGCCGCCGGCGAGGCCCATGGCCGACCACGCCGGGCTCGCGGGCCGGAGGAACGCC AATCAGGGCCCATTCCCCTACTCGTGGCAGTTCAACTTCAAGTTCTCGCTCAAGGAGGACATGTACAACGAGAAG TCGATCGAGTCCCTCCAGCAGGCCGGCATCGACTTTGGCCTCCTCGAGCGCGACGGCATCGATCCGCACGAGTTC GCGTCTCTGCTGATCCCGTCTGGTTTGGTGTGCTTCGACAACGTCCGATGGATCTCCTTCCACGGCGGCTACGAC TTTGGCTACCTCACCAAACTGCTCATCTGCTCGCCCCTGCCCAATGATGAGGTCGACTTTGACCACAAGATGAAG CTCTACTTTCCGACGACTTTCGACGTTAAGCACCTGATGAAGTACGCCATCAAGCTGCACAACTCGGGCCTACTG ACGCCGAGCGATCCCAACAGCACCGAGATTCTGCAGAAATTCGAGCATAAATCGGGCCTCGAGAACATTGCCGAG ACGCTCAAGGTCAAGCGCATCGGGTCGGCGCATCAGGCCGGGTCGGACTCGCTCCTGACGGGCAAGGTGTTCTTC CAAATGCGCGACAAGATCTTCAACGGCGACATACCAGAGGAGCACGTAGGCAAAGTCTGGGGCCTGGGCATTCCC GACGTCAGCCTCGTCATGGGATCCATGATGGGCCAGTCTGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCA GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNAACAACAACAACAACCACAACACCAATACCAACAACTCGTCCTCGCAAGCAAACGGCGGCGCGGGCCCCA GCACGCCCAGCACGGCCAGCGTCGGCCTCGTCAGCACGCCCGCGGCTCAGGGTCACAACACGAACGGTCTGGGTA GCATGGGCCCCA |
| Transcript | >Ophio5|7423 ATGCCACCGCAGATCAGGGGCTTCGGCGGCGGGCCCGGCGTGGGTGGGCCATTTCATCAGCCTGGCTTTCCTTCC CACGGCCAGCCGCAGGGCGCGCCCATGGGAGGCAACCAGTACATGGGGGCCAACGCCCAGATGAACCCCTTTGCC GCTGCCGCTGGCTTCGCCGACTCGGGTTTCGGTAGTCAGAACGCGCGCATGGGATTCGCACACGGGCCCGCCGCC GGCTTGCCGCAGCCTCAGCATGGTGGCCAGGCTCAGCACAATGTCCTGATGGACCATCCCATCATCAAGACGCAG CCGAACAAGGGGAGGATACGGGAGGTGTGGAAGCATAATCTCTACGACGAGATGGCCGTTCTGAGGGATCTGGTA GACCGATATCCCTACATCGCCATGGACACAGAGTTTCCGGGCGTCGTCTCGAGGCCGATGGGTGGCTTTCGCGGA AAGAGTGACTATCACTACCAATGCTTGCGGACCAACGTCGACATGCTCAAGGTGATCCAAATCGGCCTGACGCTG TTCAACGAAGACGGAGAGACGCCGCCGGCGAGGCCCATGGCCGACCACGCCGGGCTCGCGGGCCGGAGGAACGCC AATCAGGGCCCATTCCCCTACTCGTGGCAGTTCAACTTCAAGTTCTCGCTCAAGGAGGACATGTACAACGAGAAG TCGATCGAGTCCCTCCAGCAGGCCGGCATCGACTTTGGCCTCCTCGAGCGCGACGGCATCGATCCGCACGAGTTC GCGTCTCTGCTGATCCCGTCTGGTTTGGTGTGCTTCGACAACGTCCGATGGATCTCCTTCCACGGCGGCTACGAC TTTGGCTACCTCACCAAACTGCTCATCTGCTCGCCCCTGCCCAATGATGAGGTCGACTTTGACCACAAGATGAAG CTCTACTTTCCGACGACTTTCGACGTTAAGCACCTGATGAAGTACGCCATCAAGCTGCACAACTCGGGCCTACTG ACGCCGAGCGATCCCAACAGCACCGAGATTCTGCAGAAATTCGAGCATAAATCGGGCCTCGAGAACATTGCCGAG ACGCTCAAGGTCAAGCGCATCGGGTCGGCGCATCAGGCCGGGTCGGACTCGCTCCTGACGGGCAAGGTGTTCTTC CAAATGCGCGACAAGATCTTCAACGGCGACATACCAGAGGAGCACGTAGGCAAAGTCTGGGGCCTGGGCATTCCC GACGTCAGCCTCGTCATGGGATCCATGATGGGCCAGTCTGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCA GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNAACAACAACAACAACCACAACACCAATACCAACAACTCGTCCTCGCAAGCAAACGGCGGCGCGGGCCCCA GCACGCCCAGCACGGCCAGCGTCGGCCTCGTCAGCACGCCCGCGGCTCAGGGTCACAACACGAACGGTCTGGGTA GCATGGGCCCCATGA |
| Gene | >Ophio5|7423 ATGCCACCGCAGATCAGGGGCTTCGGCGGCGGGCCCGGCGTGGGTGGGCCATTTCATCAGCCTGGCTTTCCTTCC CACGGCCAGCCGCAGGGCGCGCCCATGGGAGGCAACCAGTACATGGGGGCCAACGCCCAGATGAACCCCTTTGCC GCTGCCGCTGGCTTCGCCGACTCGGGTTTCGGTAGTCAGAACGCGCGCATGGGATTCGCACACGGGCCCGCCGCC GGCTTGCCGCAGCCTCAGCATGGTGGCCAGGCTCAGCACAATGTCCTGATGGACCATCCCATCATCAAGACGCAG CCGAACAAGGGGAGGATACGGGAGGTGTGGAAGCATAATCTCTACGACGAGATGGCCGTTCTGAGGGATCTGGTA GACCGATATCCCTACATCGCCATGGTAACGTCTCTTCCCCCGCTACTCACCCGGTTCGTCGCTCACATGGTCATC AGGACACAGAGTTTCCGGGCGTCGTCTCGAGGCCGATGGGTGGCTTTCGCGGAAAGAGTGACTATCACTACCAAT GCTTGCGGACCAACGTCGACATGCTCAAGGTGATCCAAATCGGCCTGACGCTGTTCAACGAAGACGGAGAGACGC CGCCGGCGAGGCCCATGGCCGACCACGCCGGGCTCGCGGGCCGGAGGAACGCCAATCAGGGCCCATTCCCCTACT CGTGGCAGTTCAACTTCAAGTTCTCGCTCAAGGAGGACATGTACAACGAGAAGTCGATCGAGTCCCTCCAGCAGG CCGGCATCGACTTTGGCCTCCTCGAGCGCGACGGCATCGATCCGCACGAGTTCGCGTCTCTGCTGATCCCGTCTG GTTTGGTGTGCTTCGACAACGTCCGATGGATCTCCTTCCACGGCGGCTACGACTTTGGCTACCTCACCAAACTGC TCATCTGCTCGCCCCTGCCCAATGATGAGGTCGACTTTGACCACAAGATGAAGCTCTACTTTCCGACGACTTTCG ACGTTAAGCACCTGATGAAGTACGCCATCAAGCTGCACAACTCGGGCCTACTGACGCCGAGCGATCCCAACAGCA CCGAGATTCTGCAGAAATTCGAGCATAAATCGGGCCTCGAGAACATTGCCGAGACGCTCAAGGTCAAGCGCATCG GGTCGGCGCATCAGGCCGGGTCGGACTCGCTCCTGACGGGCAAGGTGTTCTTCCAAATGCGCGACAAGATCTTCA ACGGCGACATACCAGAGGAGCACGTAGGCAAAGTCTGGGGCCTGGGCATTCCCGACGTCAGCCTCGTCATGGGAT CCATGATGGGCCAGTCTGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCAGCNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAACAACAACAACCA CAACACCAATACCAACAACTCGTCCTCGCAAGCAAACGGCGGCGCGGGCCCCAGCACGCCCAGCACGGCCAGCGT CGGCCTCGTCAGCACGCCCGCGGCTCAGGGTCACAACACGAACGGTCTGGGTAGCATGGGCCCCATGA |